Bug 104685 - biology/biojava: upgrade to 1.5-beta and unbreak.
Summary: biology/biojava: upgrade to 1.5-beta and unbreak.
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: Normal Affects Only Me
Assignee: Thierry Thomas
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2006-10-22 21:10 UTC by Thierry Thomas
Modified: 2006-11-21 22:40 UTC (History)
1 user (show)

See Also:

Attachments
biojava.diff (27.29 KB, patch)
2006-10-22 21:10 UTC, Thierry Thomas 		no flags Details | Diff
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Description Thierry Thomas 2006-10-22 21:10:16 UTC 
	biology/biojava is marked BROKEN and DEPRECATED.

	The attached patch upgrades it to the latest version and fixes
	the build problem.

	Since I'm there, I have added a regression-tests target and fixed plist
	for WITHOUT_SAMPLES.

Fix: Please apply the following patch:
How-To-Repeat: 	See logs on pointyhat. E.g.
	http://pointyhat.freebsd.org/errorlogs/i386-errorlogs/e.5.2006092519/biojava-1.30.log
Comment 1 Edwin Groothuis freebsd_committer freebsd_triage 2006-10-22 21:10:25 UTC 
State Changed
From-To: open->feedback

Awaiting maintainers feedback
Comment 2 Thierry Thomas freebsd_committer freebsd_triage 2006-10-22 21:14:17 UTC 
Responsible Changed
From-To: freebsd-ports-bugs->thierry


My PR.
Comment 3 Pav Lucistnik freebsd_committer freebsd_triage 2006-11-21 22:02:15 UTC 
State Changed
From-To: feedback->open

Maintainer timeout (1 month)
Comment 4 dfilter service freebsd_committer freebsd_triage 2006-11-21 22:35:35 UTC 
thierry     2006-11-21 22:35:28 UTC

  FreeBSD ports repository

  Modified files:
    biology/biojava      Makefile distinfo pkg-plist 
  Added files:
    biology/biojava/files patch-build.xml 
  Log:
  - Upgrade to the latest beta and unbreak;
  
  - Add a regression-test target;
  
  - Fix plist for WITHOUT_SAMPLES.
  
  PR:             ports/104685
  Approved by:    maintainer's time-out (1 month)
  
  Revision  Changes    Path
  1.9       +44 -15    ports/biology/biojava/Makefile
  1.5       +6 -3      ports/biology/biojava/distinfo
  1.1       +11 -0     ports/biology/biojava/files/patch-build.xml (new)
  1.7       +213 -212  ports/biology/biojava/pkg-plist
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Comment 5 Thierry Thomas freebsd_committer freebsd_triage 2006-11-21 22:35:50 UTC 
State Changed
From-To: open->closed


Committed after maintainer's time-out (1 month).