- Update to version 2.0.4
Responsible Changed From-To: freebsd-ports-bugs->jadawin I'll take it.
State Changed From-To: open->feedback Ask for submitter fix.
Version 2.0.5 has been released. diff -urN /usr/ports/biology/clustalw/Makefile biology/clustalw/Makefile --- /usr/ports/biology/clustalw/Makefile 2008-02-27 15:19:00.000000000 +0900 +++ biology/clustalw/Makefile 2008-03-18 19:10:29.000000000 +0900 @@ -6,18 +6,21 @@ # PORTNAME= clustalw -PORTVERSION= 2.0.3 -PORTREVISION= 1 +PORTVERSION= 2.0.5 CATEGORIES= biology -MASTER_SITES= ftp://ftp.ebi.ac.uk/pub/software/clustalw2/ +MASTER_SITES= http://www.clustal.org/download/%SUBDIR%/ \ + ftp://ftp.ebi.ac.uk/pub/software/clustalw2/ +MASTER_SITE_SUBDIR= ${PORTVERSION} DISTNAME= ${PORTNAME}-${PORTVERSION}-src MAINTAINER= ports@FreeBSD.org -COMMENT= CLUSTAL W Multiple Sequence Alignment Program +COMMENT= A multiple alignment program for DNA or proteins -GNU_CONFIGURE= yes WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} +USE_GNOME= gnometarget +GNU_CONFIGURE= yes + PLIST_FILES= bin/clustalw bin/clustalw2 post-install: diff -urN /usr/ports/biology/clustalw/distinfo biology/clustalw/distinfo --- /usr/ports/biology/clustalw/distinfo 2008-02-26 13:36:32.000000000 +0900 +++ biology/clustalw/distinfo 2008-03-18 18:45:16.000000000 +0900 @@ -1,3 +1,3 @@ -MD5 (clustalw-2.0.3-src.tar.gz) = 77e7cf7fcea6084da22d2b19c52356c2 -SHA256 (clustalw-2.0.3-src.tar.gz) = 01a0dc2a3dc8d342367f5f7117749195a1c0d217c105d0a43e02565979cc459a -SIZE (clustalw-2.0.3-src.tar.gz) = 287805 +MD5 (clustalw-2.0.5-src.tar.gz) = f18a332a61f9cd90fc7c88e122ef7487 +SHA256 (clustalw-2.0.5-src.tar.gz) = 6a21bb7d389cc145c4175ae99f227eda356415731952bb2e58b6c951a205046a +SIZE (clustalw-2.0.5-src.tar.gz) = 289291 diff -urN /usr/ports/biology/clustalw/pkg-descr biology/clustalw/pkg-descr --- /usr/ports/biology/clustalw/pkg-descr 2007-12-16 14:55:00.000000000 +0900 +++ biology/clustalw/pkg-descr 2008-03-18 19:07:00.000000000 +0900 @@ -1,19 +1,8 @@ - CLUSTAL W Multiple Sequence Alignment Program +ClustalW2 is a general purpose multiple sequence alignment program for +DNA or proteins. It produces biologically meaningful multiple sequence +alignments of divergent sequences. It calculates the best match for the +selected sequences, and lines them up so that the identities, +similarities and differences can be seen. Evolutionary relationships +can be seen via viewing Cladograms or Phylograms. -Clustal W is a multiple alignment program for DNA or proteins. -Clustal W was written by Des Higgins (des@chah.ucc.ie), Julie Thompson -(julie@IGBMC.u-strasbg.fr), and Toby Gibson (Gibson@EMBL-Heidelberg.DE). -Version 2.0 has been completely rewritten in C++. - -Original Paper: - Thompson, J.D., D. G. Higgins and T. J. Gibson. 1994. CLUSTAL W: -improving the sensitivity of progressive multiple sequence alignment -through sequence weighting, positions-specific gap penalties and -weight matrix choice. Nucleic Acids Research 22: 4673-4680. - -Tips: - Higgins, D. G., J. D. Thompson, and T. J. Gibson. 1996. Using -CLUSTAL for multiple sequence alignments. Methods in Enzymology 266: -383-402. - -WWW: http://bips.u-strasbg.fr/fr/Documentation/ClustalX/ +WWW: http://www.clustal.org/
jadawin 2008-03-19 13:31:52 UTC FreeBSD ports repository Modified files: biology/clustalw distinfo pkg-descr Log: - Update to version 2.0.5 - Add RESTRICTED due to a non-commercial use licence. PR: ports/121794 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Approved by: thierry and tabthorpe (mentors) Revision Changes Path 1.7 +3 -3 ports/biology/clustalw/distinfo 1.4 +7 -18 ports/biology/clustalw/pkg-descr _______________________________________________ cvs-all@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/cvs-all To unsubscribe, send any mail to "cvs-all-unsubscribe@freebsd.org"
State Changed From-To: feedback->closed Committed, with minor changes. Thanks!
jadawin 2008-03-19 14:01:13 UTC FreeBSD ports repository Modified files: biology/clustalw Makefile Log: - Update to 2.0.5 - Add RESTRICTED due to non-commercial use licence. PR: ports/121794 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Approved by: thierry and tabthorpe (mentors) Revision Changes Path 1.12 +10 -5 ports/biology/clustalw/Makefile _______________________________________________ cvs-all@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/cvs-all To unsubscribe, send any mail to "cvs-all-unsubscribe@freebsd.org"