Bug 122452 - New port: biology/mapm3
Summary: New port: biology/mapm3
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: Normal Affects Only Me
Assignee: Rong-En Fan
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2008-04-04 20:10 UTC by Tassilo Philipp
Modified: 2008-04-06 05:50 UTC (History)
0 users

See Also:


Attachments
file.shar (45.02 KB, text/plain)
2008-04-04 20:10 UTC, Tassilo Philipp
no flags Details

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Description Tassilo Philipp 2008-04-04 20:10:02 UTC

Fix: Patch attached with submission follows:
Comment 1 Rong-En Fan freebsd_committer freebsd_triage 2008-04-05 17:29:08 UTC
Responsible Changed
From-To: freebsd-ports-bugs->rafan

I'll take it.
Comment 2 dfilter service freebsd_committer freebsd_triage 2008-04-06 05:49:10 UTC
rafan       2008-04-06 04:49:06 UTC

  FreeBSD ports repository

  Modified files:
    biology              Makefile 
  Added files:
    biology/mapm3        Makefile distinfo pkg-descr pkg-plist 
    biology/mapm3/files  patch-Makefile patch-lib-iolib.c 
                         patch-lib-iolib.h patch-lib-makehelp.c 
                         patch-lib-shell.c patch-lib-syscode.c 
                         patch-lib-system.h patch-mapm-chroms.c 
                         patch-mapm-database.c patch-mapm-info.c 
                         patch-mapm-map_info.h patch-mapm-mapm.h 
                         patch-mapm-maps.c patch-mapm-npt_cmds.c 
                         patch-mapm-print.c patch-mapm-reader.c 
                         patch-mapm-state.c patch-mapm-sys_cmds.c 
                         patch-mapm-two_cmds.c patch-quant-qcmds.c 
                         patch-quant-qraw.c patch-sun-xmapmaker 
                         patch-sun-xqtl 
  Log:
  MAPMAKER/EXP is a linkage analysis package designed to help construct primary
  linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
  performs full multipoint linkage analysis (simultaneous estimation of all
  recombination fractions from the primary data) for dominant, recessive, and co-
  dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only
  successor to the original MAPMAKER program.
  
  MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
  genes controlling polygenic quantitative traits in F2 intercrosses and BC1
  backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
  can be found in the technical report (included with MAPMAKER/QTL).
  
  WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
  
  PR:             ports/122452
  Submitted by:   Tassilo Philipp <tphilipp at potion-studios.com>
  
  Revision  Changes    Path
  1.95      +1 -0      ports/biology/Makefile
  1.1       +26 -0     ports/biology/mapm3/Makefile (new)
  1.1       +3 -0      ports/biology/mapm3/distinfo (new)
  1.1       +54 -0     ports/biology/mapm3/files/patch-Makefile (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-lib-iolib.c (new)
  1.1       +78 -0     ports/biology/mapm3/files/patch-lib-iolib.h (new)
  1.1       +81 -0     ports/biology/mapm3/files/patch-lib-makehelp.c (new)
  1.1       +81 -0     ports/biology/mapm3/files/patch-lib-shell.c (new)
  1.1       +43 -0     ports/biology/mapm3/files/patch-lib-syscode.c (new)
  1.1       +71 -0     ports/biology/mapm3/files/patch-lib-system.h (new)
  1.1       +29 -0     ports/biology/mapm3/files/patch-mapm-chroms.c (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-database.c (new)
  1.1       +41 -0     ports/biology/mapm3/files/patch-mapm-info.c (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-map_info.h (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-mapm.h (new)
  1.1       +72 -0     ports/biology/mapm3/files/patch-mapm-maps.c (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-npt_cmds.c (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-print.c (new)
  1.1       +191 -0    ports/biology/mapm3/files/patch-mapm-reader.c (new)
  1.1       +18 -0     ports/biology/mapm3/files/patch-mapm-state.c (new)
  1.1       +47 -0     ports/biology/mapm3/files/patch-mapm-sys_cmds.c (new)
  1.1       +16 -0     ports/biology/mapm3/files/patch-mapm-two_cmds.c (new)
  1.1       +93 -0     ports/biology/mapm3/files/patch-quant-qcmds.c (new)
  1.1       +53 -0     ports/biology/mapm3/files/patch-quant-qraw.c (new)
  1.1       +9 -0      ports/biology/mapm3/files/patch-sun-xmapmaker (new)
  1.1       +9 -0      ports/biology/mapm3/files/patch-sun-xqtl (new)
  1.1       +13 -0     ports/biology/mapm3/pkg-descr (new)
  1.1       +6 -0      ports/biology/mapm3/pkg-plist (new)
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Comment 3 Rong-En Fan freebsd_committer freebsd_triage 2008-04-06 05:49:48 UTC
State Changed
From-To: open->closed

New port added. Thanks!