Bug 142513 - [update port] science/vmd -- upgrade from 1.8.3 to 1.8.7
Summary: [update port] science/vmd -- upgrade from 1.8.3 to 1.8.7
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: Normal Affects Only Me
Assignee: Wesley Shields
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2010-01-09 05:30 UTC by Ben Kaduk
Modified: 2010-02-22 14:30 UTC (History)
0 users

See Also:


Attachments
file.diff (92.41 KB, patch)
2010-01-09 05:30 UTC, Ben Kaduk
no flags Details | Diff
vmd-errors.txt (448 bytes, TEXT/PLAIN; charset=US-ASCII)
2010-01-09 05:42 UTC, Ben Kaduk
no flags Details

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Description Ben Kaduk 2010-01-09 05:30:01 UTC
Upgrade from VMD 1.8.3 to 1.8.7.  I'm not entirely sure what new features this provides, since I was not able to install 1.8.3 (The tachyon 0.97 that the port wanted was no longer available on the upstream site).  As such, I also can't tell if there are any regressions in the new packaging.
I guess I will assert maintainership and take one for ports@ ...
I changed the master site for the stride tarball to one hosted on the www.ks.uiuc.edu site that is upstream for vmd.
A couple of tweaks to the Makefile to make portlint less unhappy, but there are still several spurious warnings issued.
Upstream has updated from Tcl/Tk 8.4 to 8.5, so we'll follow that.

I have only tested on an amd64 system, as I don't have a 32-bit install with graphics handy.

In addition to the patch, I'll also attach a copy of the diagnostic errors that are printed on startup (some modules can't be found); as mentioned above, I don't know if this is a regression from the 1.8.3 port.

Fix: Patch attached with submission follows:
Comment 1 Ben Kaduk 2010-01-09 05:42:39 UTC
And here's the promised log.
--kaduk
Comment 2 Philip M. Gollucci freebsd_committer freebsd_triage 2010-01-10 00:30:59 UTC
Responsible Changed
From-To: freebsd-ports-bugs->pgollucci

I'll take it.
Comment 3 Philip M. Gollucci freebsd_committer freebsd_triage 2010-02-13 05:14:51 UTC
Responsible Changed
From-To: pgollucci->freebsd-ports-bugs

requested by linimon
Comment 4 Philip M. Gollucci freebsd_committer freebsd_triage 2010-02-13 06:41:19 UTC
State Changed
From-To: open->feedback

Ask for maintainer fix. 

ls -l /pr/distfiles/vmd-1.8.* /pr/distfiles/tachyon-0.98.7.tar.gz /pr/distfiles/Stride_src.tar.Z 
-rw-r--r--  1 root  wheel  -   98K Feb 13 00:52:53 2010 /pr/distfiles/Stride_src.tar.Z
-rw-r--r--  1 root  wheel  -  3.1M Feb 13 00:54:55 2010 /pr/distfiles/tachyon-0.98.7.tar.gz
-rw-rw-r--  1 root  wheel  -  8.2M Feb 13 00:40:14 2010 /pr/distfiles/vmd-1.8.3.src.tar.gz
-rw-r--r--  1 root  wheel  -   23M Feb 13 00:45:35 2010 /pr/distfiles/vmd-1.8.7.src.tar.gz

http://tb.p6m7g8.net//errors/9-CURRENT-amd64/vmd-1.8.7.log

Also, an updated patch that applies

http://people.freebsd.org/~pgollucci/FreeBSD/diffs/science_vmd-1.8.7.diff
Comment 5 Ben Kaduk 2010-02-13 20:23:18 UTC
On Sat, 13 Feb 2010, pgollucci@freebsd.org wrote:

> Synopsis: [update port] science/vmd -- upgrade from 1.8.3 to 1.8.7
>
> State-Changed-From-To: open->feedback
> State-Changed-By: pgollucci
> State-Changed-When: Sat Feb 13 06:41:19 UTC 2010
> State-Changed-Why:
> Ask for maintainer fix.
>
> http://www.freebsd.org/cgi/query-pr.cgi?pr=142513
>

The comment includes a link to a log at
http://tb.p6m7g8.net//errors/9-CURRENT-amd64/vmd-1.8.7.log
but tb.p6m7g8.net seems to be off the net at the moment.

-Ben Kaduk
Comment 6 Philip M. Gollucci freebsd_committer freebsd_triage 2010-02-14 18:09:22 UTC
On 2/13/2010 3:23 PM, Benjamin Kaduk wrote:
> On Sat, 13 Feb 2010, pgollucci@freebsd.org wrote:
> 
>> Synopsis: [update port] science/vmd -- upgrade from 1.8.3 to 1.8.7
>>
>> State-Changed-From-To: open->feedback
>> State-Changed-By: pgollucci
>> State-Changed-When: Sat Feb 13 06:41:19 UTC 2010
>> State-Changed-Why:
>> Ask for maintainer fix.
>>
>> http://www.freebsd.org/cgi/query-pr.cgi?pr=142513
>>
> 
> The comment includes a link to a log at
> http://tb.p6m7g8.net//errors/9-CURRENT-amd64/vmd-1.8.7.log
> but tb.p6m7g8.net seems to be off the net at the moment.
> 
> -Ben Kaduk

Mumble, I wanted to use it today too.  Its my $work, I won't be there
again until Monday.
Comment 7 Ben Kaduk 2010-02-17 06:48:26 UTC
On Sun, 14 Feb 2010, Philip M. Gollucci wrote:

> On 2/13/2010 3:23 PM, Benjamin Kaduk wrote:
>>
>> The comment includes a link to a log at
>> http://tb.p6m7g8.net//errors/9-CURRENT-amd64/vmd-1.8.7.log
>> but tb.p6m7g8.net seems to be off the net at the moment.
>>
>> -Ben Kaduk
>
> Mumble, I wanted to use it today too.  Its my $work, I won't be there
> again until Monday.


(I couldn't get Philip on IRC for a couple days, so resorting to mail.)

So, the error on your tinderbox is just that it couldn't fetch the 
distfile.  Are you sure you put it in the right place?

-Ben Kaduk
Comment 8 Mark Linimon freebsd_committer freebsd_triage 2010-02-20 22:43:13 UTC
State Changed
From-To: feedback->open

Feedback received. 


Comment 9 Mark Linimon freebsd_committer freebsd_triage 2010-02-20 22:43:13 UTC
Responsible Changed
From-To: freebsd-ports-bugs->wxs

wxs expressed an interest.
Comment 10 dfilter service freebsd_committer freebsd_triage 2010-02-22 14:23:00 UTC
wxs         2010-02-22 14:22:45 UTC

  FreeBSD ports repository

  Modified files:
    science/vmd          Makefile distinfo pkg-plist 
    science/vmd/files    patch-AtomParser.C patch-Make-arch 
                         patch-Makefile patch-OpenGLExtensions.C 
                         patch-configure 
                         patch-lib_tachyon_unix_Make-arch 
                         patch-stride.h patch-utilities.C 
  Removed files:
    science/vmd/files    patch-vmd 
  Log:
  - Update to 1.8.7
  - Pass maintainer to submitter
  
  PR:             ports/142513
  Submitted by:   Ben Kaduk <kaduk@mit.edu>
  Feature safe:   yes
  
  Revision  Changes     Path
  1.17      +27 -21     ports/science/vmd/Makefile
  1.4       +9 -6       ports/science/vmd/distinfo
  1.3       +3 -3       ports/science/vmd/files/patch-AtomParser.C
  1.3       +17 -14     ports/science/vmd/files/patch-Make-arch
  1.5       +7 -8       ports/science/vmd/files/patch-Makefile
  1.2       +3 -3       ports/science/vmd/files/patch-OpenGLExtensions.C
  1.6       +69 -34     ports/science/vmd/files/patch-configure
  1.2       +3 -3       ports/science/vmd/files/patch-lib_tachyon_unix_Make-arch
  1.2       +1 -1       ports/science/vmd/files/patch-stride.h
  1.2       +3 -3       ports/science/vmd/files/patch-utilities.C
  1.2       +0 -11      ports/science/vmd/files/patch-vmd (dead)
  1.5       +1057 -344  ports/science/vmd/pkg-plist
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Comment 11 Wesley Shields freebsd_committer freebsd_triage 2010-02-22 14:23:01 UTC
State Changed
From-To: open->closed

Committed, with minor changes. Thanks!