Bug 198292 - [maintainer] biology/samtools: update to 1.2
Summary: [maintainer] biology/samtools: update to 1.2
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Bartek Rutkowski
URL:
Keywords: patch-ready
Depends on:
Blocks:
 
Reported: 2015-03-04 21:04 UTC by cartwright
Modified: 2015-03-06 12:55 UTC (History)
1 user (show)

See Also:


Attachments
patch to update biology/samtools to 1.2 (1010 bytes, patch)
2015-03-04 21:04 UTC, cartwright
no flags Details | Diff
Poudriere Log for 9.3 (28.67 KB, text/x-log)
2015-03-05 17:39 UTC, cartwright
no flags Details
Poudriere Log for 10.1 (29.99 KB, text/x-log)
2015-03-05 17:39 UTC, cartwright
no flags Details

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Description cartwright 2015-03-04 21:04:30 UTC
Created attachment 153798 [details]
patch to update biology/samtools to 1.2

Update biology/samtools to 1.2.

Requres biology/htslib 1.2.1 patch posted at

https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=198291

Tested in Poudriere on 10.1 and 9.3.
Comment 1 John Marino freebsd_committer freebsd_triage 2015-03-05 14:03:55 UTC
same question as other PR, can you upload the poudriere log?
It should include stage-qa checks too.
Comment 2 cartwright 2015-03-05 17:39:09 UTC
Created attachment 153846 [details]
Poudriere Log for 9.3
Comment 3 cartwright 2015-03-05 17:39:30 UTC
Created attachment 153847 [details]
Poudriere Log for 10.1
Comment 4 cartwright 2015-03-05 17:39:46 UTC
Logs are now attached.
Comment 5 John Marino freebsd_committer freebsd_triage 2015-03-05 17:42:28 UTC
Okay thanks.
Speaking for myself, one poudriere log is enough.  two is gravy!

I'll promote the PR now.
Comment 6 commit-hook freebsd_committer freebsd_triage 2015-03-06 12:54:43 UTC
A commit references this bug:

Author: robak
Date: Fri Mar  6 12:53:59 UTC 2015
New revision: 380597
URL: https://svnweb.freebsd.org/changeset/ports/380597

Log:
  biology/samtools: update 1.1 -> 1.2

  PR:		198292
  Submitted by:	Reed Cartwright <cartwright@asu.edu>

Changes:
  head/biology/samtools/Makefile
  head/biology/samtools/distinfo
Comment 7 Bartek Rutkowski freebsd_committer freebsd_triage 2015-03-06 12:55:17 UTC
Committed, thanks for your work!