Bug 208044 - [NEW PORT] biology/trimmomatic: Flexible read trimming tool for Illumina NGS data
Summary: [NEW PORT] biology/trimmomatic: Flexible read trimming tool for Illumina NGS ...
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Wen Heping
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-03-15 21:14 UTC by Jason W. Bacon
Modified: 2016-03-17 14:36 UTC (History)
1 user (show)

See Also:

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2016-03-15 21:14 UTC, Jason W. Bacon 		no flags Details
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Description Jason W. Bacon freebsd_committer freebsd_triage 2016-03-15 21:14:23 UTC 
Created attachment 168257 [details]
Shar archive

Trimmomatic performs a variety of useful trimming tasks for illumina
NGS paired-end and single ended data.

WWW: http://www.usadellab.org/cms/?page=trimmomatic

2nd last dependency for Trinity pipeline.

portlint: OK (looks fine.)
testport: OK (poudriere: {10.1,9.3}-RELEASE {amd64,i386})
Comment 1 commit-hook freebsd_committer freebsd_triage 2016-03-17 08:21:31 UTC 
A commit references this bug:

Author: wen
Date: Thu Mar 17 08:21:15 UTC 2016
New revision: 411261
URL: https://svnweb.freebsd.org/changeset/ports/411261

Log:
  Trimmomatic performs a variety of useful trimming tasks for illumina
  NGS paired-end and single ended data.

  WWW: http://www.usadellab.org/cms/?page=trimmomatic

  PR:		208044
  Submitted by:	bacon4000@gmail.com

Changes:
  head/biology/Makefile
  head/biology/trimmomatic/
  head/biology/trimmomatic/Makefile
  head/biology/trimmomatic/distinfo
  head/biology/trimmomatic/pkg-descr
  head/biology/trimmomatic/pkg-plist
Comment 2 Jason W. Bacon freebsd_committer freebsd_triage 2016-03-17 14:36:50 UTC 
Thanks for the quick action!