Bug 209611 - biology/diamond: Upgrade to 0.8.5
Summary: biology/diamond: Upgrade to 0.8.5
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Matthew Seaman
URL:
Keywords: patch, patch-ready
Depends on:
Blocks:
 
Reported: 2016-05-18 15:08 UTC by Joseph Mingrone
Modified: 2016-06-09 01:41 UTC (History)
3 users (show)

See Also:
mat: maintainer-feedback+

Attachments
patch to upgrade biology/diamond to version 0.8.1 (2.79 KB, patch)
2016-05-18 15:08 UTC, Joseph Mingrone 		no flags Details | Diff
correct svn patch to upgrade biology/diamond to 0.8.1 (2.76 KB, patch)
2016-05-18 18:26 UTC, Joseph Mingrone 		no flags Details | Diff
svn patch for newer version 0.8.2 (2.76 KB, patch)
2016-05-24 14:48 UTC, Joseph Mingrone 		jrm: maintainer-approval+
Details | Diff
svn diff for new version 0.8.3 (2.76 KB, patch)
2016-05-29 16:28 UTC, Joseph Mingrone 		jrm: maintainer-approval+
Details | Diff
svn patch to upgrade to 0.8.4 (2.76 KB, patch)
2016-06-01 14:38 UTC, Joseph Mingrone 		jrm: maintainer-approval+
Details | Diff
svn patch to upgrade to 0.8.5 (2.76 KB, patch)
2016-06-03 10:41 UTC, Joseph Mingrone 		jrm: maintainer-approval+
Details | Diff
Show Obsolete (5) View All Add an attachment (proposed patch, testcase, etc.)

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Description Joseph Mingrone freebsd_committer freebsd_triage 2016-05-18 15:08:26 UTC 
Created attachment 170449 [details]
patch to upgrade biology/diamond to version 0.8.1

portlint: OK
testport: OK (poudriere: 9.3-RELEASE-p39, amd64) [1]
testport: OK (poudriere: 10.3-RELEASE,    amd64) [2]

[1]
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-05-18_12h02m44s/logs/diamond-0.8.1.log

[2]
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-05-18_12h05m13s/logs/diamond-0.8.1.log
Comment 1 Bartek Rutkowski freebsd_committer freebsd_triage 2016-05-18 17:52:37 UTC 
The patch fails to apply cleanly, can you update your ports and send new patch?
Comment 2 Joseph Mingrone freebsd_committer freebsd_triage 2016-05-18 18:26:15 UTC 
Created attachment 170454 [details]
correct svn patch to upgrade biology/diamond to 0.8.1

Oop.  I must have attached the wrong patch last time.  Sorry about that.
Comment 3 Joseph Mingrone freebsd_committer freebsd_triage 2016-05-24 14:48:47 UTC 
Created attachment 170602 [details]
svn patch for newer version 0.8.2

Another new version (0.8.2) has come out.

portlint: OK
testport: OK (poudriere: 9.3-RELEASE-p39, amd64) [1]
testport: OK (poudriere: 10.3-RELEASE,    amd64) [2]

[1]
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-05-24_11h44m45s/logs/diamond-0.8.2.log

[2]
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-05-24_11h44m21s/logs/diamond-0.8.2.log
Comment 4 Joseph Mingrone freebsd_committer freebsd_triage 2016-05-29 16:28:08 UTC 
Created attachment 170801 [details]
svn diff for new version 0.8.3

Version 0.8.3 has been released.

portlint: OK
testport: OK (poudriere: 9.3-RELEASE-p39, amd64) [1]
testport: OK (poudriere: 10.3-RELEASE,    amd64) [2]

[1]
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-05-29_13h15m13s/logs/diamond-0.8.3.log

[2]
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-05-29_13h15m40s/logs/diamond-0.8.3.log
Comment 5 Joseph Mingrone freebsd_committer freebsd_triage 2016-06-01 14:38:29 UTC 
Created attachment 170918 [details]
svn patch to upgrade to 0.8.4

Another new version.
Comment 6 Mathieu Arnold freebsd_committer freebsd_triage 2016-06-01 14:57:44 UTC 
Ask the maintainer about it
Comment 7 Joseph Mingrone freebsd_committer freebsd_triage 2016-06-03 10:37:40 UTC 
portlint: OK
testport: OK (poudriere: 9.3-RELEASE-p39, amd64) [1]
testport: OK (poudriere: 10.3-RELEASE,    amd64) [2]

[1]
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-06-03_07h32m17s/logs/diamond-0.8.5.log

[2]
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-06-03_07h33m22s/logs/diamond-0.8.5.log
Comment 8 Joseph Mingrone freebsd_committer freebsd_triage 2016-06-03 10:41:54 UTC 
Created attachment 170974 [details]
svn patch to upgrade to 0.8.5

Upstream is busy with another new version, 0.8.5.

portlint: OK
testport: OK (poudriere: 9.3-RELEASE-p39, amd64) [1]
testport: OK (poudriere: 10.3-RELEASE,    amd64) [2]

[1]
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-06-03_07h32m17s/logs/diamond-0.8.5.log

[2]
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-06-03_07h33m22s/logs/diamond-0.8.5.log
Comment 9 commit-hook freebsd_committer freebsd_triage 2016-06-09 01:40:57 UTC 
A commit references this bug:

Author: matthew
Date: Thu Jun  9 01:39:59 UTC 2016
New revision: 416575
URL: https://svnweb.freebsd.org/changeset/ports/416575

Log:
  Update to 0.8.5

  PR:		209611
  Submitted by:	jrm@ftfl.ca (maintainer)

Changes:
  head/biology/diamond/Makefile
  head/biology/diamond/distinfo
  head/biology/diamond/files/patch-CMakeLists.txt
Comment 10 Matthew Seaman freebsd_committer freebsd_triage 2016-06-09 01:41:25 UTC 
Committed, thanks!