Bug 237848 - biology/tRNAscan-SE: fix build with GCC-based architecturs
Summary: biology/tRNAscan-SE: fix build with GCC-based architecturs
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Piotr Kubaj
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-05-12 10:28 UTC by Piotr Kubaj
Modified: 2019-05-30 07:39 UTC (History)
2 users (show)

See Also:
mzaki: maintainer-feedback+

Attachments
patch (299 bytes, patch)
2019-05-12 10:28 UTC, Piotr Kubaj 		pkubaj: maintainer-approval? (mzaki)
 Details | Diff
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Description Piotr Kubaj freebsd_committer freebsd_triage 2019-05-12 10:28:10 UTC 
Created attachment 204336 [details]
patch

Recently, after testing, I committed a change to use new compiler on GCC architectures.

It turns out this was not needed, there's an issue with threaded compilation which manifests in:
--- bin/EukHighConfidenceFilter ---
sh: cannot create bin/EukHighConfidenceFilter: No such file or directory
--- bin/fasta2gsi ---
sh: cannot create bin/fasta2gsi: No such file or directory
--- bin/sstofa ---
sh: cannot create bin/sstofa: No such file or directory

Remove USES=compiler:c11 and add MAKE_JOBS_UNSAFE=yes to fix it.
Comment 1 commit-hook freebsd_committer freebsd_triage 2019-05-30 07:39:16 UTC 
A commit references this bug:

Author: pkubaj
Date: Thu May 30 07:39:07 UTC 2019
New revision: 503045
URL: https://svnweb.freebsd.org/changeset/ports/503045

Log:
  biology/tRNAscan-SE: fix build with GCC-based architecturs

  Add MAKE_JOBS_UNSAFE=yes to fix build.

  Remove USES=compiler:c11, it's not necessary.

  PR:		237848
  Approved by:	mzaki@niid.go.jp (maintainer), linimon (mentor)
  Differential Revision:	https://reviews.freebsd.org/D20439

Changes:
  head/biology/tRNAscan-SE/Makefile