Created attachment 231576 [details] Patch for v1.79 PLEASE DO NOT USE This update fixes the man page, which previously had the wrong unit (at one point it incorrectly said concentrations should be specified in nanomoles instead of millimoles). Thanks to Zhifu Wang in Beijing for catching this.
Maintainer informed via mail
Please "hold fire" with this one: it turns out there is ANOTHER units-related correction in the man page that needs doing. I'll put out a "version 1.8" soon with that
Created attachment 231622 [details] Patch for v1.8
Comment on attachment 231622 [details] Patch for v1.8 OK, please use this patch for 1.8 now, thanks
^Triage: If there is a changelog or release notes URL available for this version, please add it to the URL field. Q/A: Patch did not apply cleanly. The context fails because the version in the repo has PORTREVISION but in the patch there is no such line and it is not removed either. Also the patch contains CR/LF characters at the end. Would you have a look at it? Thanks!
Sorry my diff was against the 2021Q4 branch (which is what I had in my /usr/ports), I didn't realise the main branch had changed since then. (I thought "auto-update-system" was keeping my /usr/ports current, but seems not.) I'll do another patch. Currently there is no dedicated Changelog file, I've just been mentioning the changes in a section of the documentation. But I could split them off into a Changelog if that makes more sense.
Created attachment 231641 [details] Patch for v1.81 Please use this patch instead, thanks
Are you the maintainer ssb22@cam.ac.uk?
===> Building for pooler-1.81_1 make[1]: "/wrkdirs/usr/ports/biology/pooler/work/PrimerPooler-1.81/pooler/Makefile" line 35: Need an operator make[1]: "/wrkdirs/usr/ports/biology/pooler/work/PrimerPooler-1.81/pooler/Makefile" line 43: Need an operator make[1]: Fatal errors encountered -- cannot continue make[1]: stopped in /wrkdirs/usr/ports/biology/pooler/work/PrimerPooler-1.81/pooler ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Also PORTREVISION should be removed since we are bumping DISTVERSION. ^Triage: Please confirm this change passes QA (portlint, poudriere at least) For details and instructions, see: https://docs.freebsd.org/en/books/porters-handbook/#testing
(In reply to Silas S. Brown from comment #6) auto-update-system won't switch your ports from quarterly to current. It will install updates to quarterly and switch to a new quarter based on the time stamp of, e.g., http://pkg.freebsd.org/FreeBSD:13:amd64/quarterly/meta.txt. If you want to switch to current, run auto-pkg-latest.
Created attachment 231665 [details] Patch for v1.82 ok, THIS patch should work, sorry about that!
Created attachment 231666 [details] Patch for v1.82 - with distinfo
A commit in branch main references this bug: URL: https://cgit.FreeBSD.org/ports/commit/?id=8d34513c3f7ac851134d8452109c28497f0442cb commit 8d34513c3f7ac851134d8452109c28497f0442cb Author: Fernando Apesteguía <fernape@FreeBSD.org> AuthorDate: 2022-02-10 12:53:06 +0000 Commit: Fernando Apesteguía <fernape@FreeBSD.org> CommitDate: 2022-02-10 14:23:48 +0000 biology/pooler: update to 1.82 ChangeLog: http://ssb22.user.srcf.net/pooler/#changes PR: 261741 Reported by: silas-freebsd@flatline.org.uk biology/pooler/Makefile | 7 +++---- biology/pooler/distinfo | 6 +++--- 2 files changed, 6 insertions(+), 7 deletions(-)
Committed, Thanks!