Bug 35753 - New Port: biology/act
Summary: New Port: biology/act
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: Normal Affects Only Me
Assignee: freebsd-ports-bugs (Nobody)
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2002-03-11 00:30 UTC by Camson
Modified: 2003-01-16 14:23 UTC (History)
0 users

See Also:


Attachments
file.shar (46.13 KB, text/plain)
2002-03-11 00:30 UTC, Camson
no flags Details

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Description Camson 2002-03-11 00:30:01 UTC
ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based on
Artemis. In common with Artemis, ACT is written in Java and runs on UNIX,
GNU/Linux, Macintosh and MS Windows systems. It can read complete EMBL
and GENBANK entries or sequence in FASTA or raw format. Extra sequence
features can be in EMBL, GENBANK or GFF format. ACT is distributed under the
same license as Artemis. 

The sequence comparison displayed by ACT is usually the result of a blastn or
tblastx search that has been processed by MSPcrunch. MSPcrunch must be run
with the -d flag for the output to be usable by ACT. 

WWW:  http://www.sanger.ac.uk/Software/Act/manual
Comment 1 Camson 2002-04-17 00:26:51 UTC
diff -ruN act.orig/Makefile act/Makefile
--- act.orig/Makefile   Wed Apr 17 09:23:47 2002
+++ act/Makefile        Wed Apr 17 09:22:50 2002
@@ -7,8 +7,9 @@

 PORTNAME=      act
 PORTVERSION=   1.0
+PORTREVISION=  0
 CATEGORIES=    biology
-MASTER_SITES=  http://www.sanger.ac.uk/Software/Act/v1/
+MASTER_SITES=  http://www.sanger.ac.uk/Software/ACT/v1/
 DISTNAME=      act_compiled_v1

 MAINTAINER=    chuynh@biolateral.com.au
diff -ruN act.orig/pkg-descr act/pkg-descr
--- act.orig/pkg-descr  Wed Apr 17 09:23:47 2002
+++ act/pkg-descr       Wed Apr 17 09:24:29 2002
@@ -9,4 +9,4 @@
 tblastx search that has been processed by MSPcrunch. MSPcrunch must be
run
 with the -d flag for the output to be usable by ACT.

-WWW:  http://www.sanger.ac.uk/Software/Act/manual
+WWW:  http://www.sanger.ac.uk/Software/ACT/manual


--
Camson Huynh - Senior Systems Administrator   BioLateral Pty Ltd
Email:  chuynh@biolateral.com.au              Level 5, 92 Parramatta Rd,
Phone:  +61 2 9036 3002                       Camperdown NSW 2050 Australia
Mobile: +61 413 919 233                       http://www.biolateral.com.au/
Comment 2 Edwin Groothuis freebsd_committer freebsd_triage 2003-01-16 14:23:01 UTC
State Changed
From-To: open->closed

Commited, thanks! 
(sorry for the delay)