Bug 117713 - Update port: biology/clustalw to 2.0
Summary: Update port: biology/clustalw to 2.0
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: Normal Affects Only Me
Assignee: freebsd-ports-bugs (Nobody)
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2007-10-31 10:40 UTC by Motomichi Matsuzaki
Modified: 2007-12-15 18:50 UTC (History)
0 users

See Also:

Attachments
file.diff (19.73 KB, patch)
2007-10-31 10:40 UTC, Motomichi Matsuzaki 		no flags Details | Diff
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Description Motomichi Matsuzaki 2007-10-31 10:40:00 UTC 
This version has been completely rewritten in C++.
Also minor improvements were introduced:

* New option for calculating guide trees with UPGMA method
  allowing faster alignment on large datasets, however less accurate.

* "Remove first" iteration method for refining alignments.

Fix: Patch attached with submission follows:
Comment 1 Thomas Abthorpe freebsd_committer freebsd_triage 2007-11-28 17:30:19 UTC 
Responsible Changed
From-To: freebsd-ports-bugs->tabthorpe

I'll take it.
Comment 2 Thomas Abthorpe freebsd_committer freebsd_triage 2007-12-05 06:25:32 UTC 
Responsible Changed
From-To: tabthorpe->freebsd-ports-bugs@FreeBSD.org

Back to the pool
Comment 3 Pav Lucistnik freebsd_committer freebsd_triage 2007-12-15 18:42:23 UTC 
State Changed
From-To: open->closed

Committed, thanks!
Comment 4 dfilter service freebsd_committer freebsd_triage 2007-12-15 18:47:05 UTC 
pav         2007-12-15 18:47:00 UTC

  FreeBSD ports repository

  Modified files:
    biology/clustalw     Makefile distinfo pkg-descr pkg-plist 
  Added files:
    biology/clustalw/files patch-Makefile 
                           patch-general_ClustalWResources.cpp 
                           patch-general_Utility.cpp 
  Removed files:
    biology/clustalw/files patch-aa patch-ab patch-ac patch-ae 
                           patch-af patch-ah patch-ai patch-aj 
  Log:
  - Update to 2.0
  
  PR:             ports/117713
  Submitted by:   Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  
  Revision  Changes    Path
  1.9       +5 -5      ports/biology/clustalw/Makefile
  1.5       +3 -3      ports/biology/clustalw/distinfo
  1.1       +13 -0     ports/biology/clustalw/files/patch-Makefile (new)
  1.4       +0 -11     ports/biology/clustalw/files/patch-aa (dead)
  1.3       +0 -24     ports/biology/clustalw/files/patch-ab (dead)
  1.5       +0 -137    ports/biology/clustalw/files/patch-ac (dead)
  1.3       +0 -138    ports/biology/clustalw/files/patch-ae (dead)
  1.3       +0 -11     ports/biology/clustalw/files/patch-af (dead)
  1.3       +0 -11     ports/biology/clustalw/files/patch-ah (dead)
  1.3       +0 -11     ports/biology/clustalw/files/patch-ai (dead)
  1.3       +0 -43     ports/biology/clustalw/files/patch-aj (dead)
  1.1       +11 -0     ports/biology/clustalw/files/patch-general_ClustalWResources.cpp (new)
  1.1       +20 -0     ports/biology/clustalw/files/patch-general_Utility.cpp (new)
  1.3       +7 -12     ports/biology/clustalw/pkg-descr
  1.2       +1 -0      ports/biology/clustalw/pkg-plist
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