NJplot is a tree drawing program able to draw any phylogenetic tree expressed in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP package). NJplot is especially convenient for rooting the unrooted trees obtained from parsimony, distance or maximum likelihood tree-building methods. WWW: http://pbil.univ-lyon1.fr/software/njplot.html Although there are no explicit licensing statements fot NJplot, the submitter has confirmed by e-mail to the author that it can be redistributed in source and in binary forms without restrictions. The package contains 4 programs: njplot, newicktops, newicktotxt, unrooted. If -DWITHOUT_X11 is specified, 2 non-interactive programs (newickto{ps,txt}) will be built. Fix: Patch attached with submission follows:
State Changed From-To: open->closed New port added, thanks! I have switched to the versioned distfile in archive/ subdir.
pav 2008-05-14 14:07:01 UTC FreeBSD ports repository Modified files: biology Makefile Added files: biology/njplot Makefile distinfo pkg-descr biology/njplot/files patch-makefile Log: NJplot is a tree drawing program able to draw any phylogenetic tree expressed in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP package). NJplot is especially convenient for rooting the unrooted trees obtained from parsimony, distance or maximum likelihood tree-building methods. The package contains the following programs: njplot - draw phylogenetic trees and interactively modify them newicktops - non-interactive version rendering into a PostScript file newicktotxt - non-interactive version rendering into a text file unrooted - draw unrooted circular trees If you use NJplot in a published work, please cite the following reference: Perriere, G. and Gouy, M. (1996) WWW-Query: An on-line retrieval system for biological sequence banks. Biochimie, 78, 364-369. WWW: http://pbil.univ-lyon1.fr/software/njplot.html PR: ports/118438 Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> Revision Changes Path 1.97 +1 -0 ports/biology/Makefile 1.1 +55 -0 ports/biology/njplot/Makefile (new) 1.1 +3 -0 ports/biology/njplot/distinfo (new) 1.1 +69 -0 ports/biology/njplot/files/patch-makefile (new) 1.1 +17 -0 ports/biology/njplot/pkg-descr (new) _______________________________________________ cvs-all@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/cvs-all To unsubscribe, send any mail to "cvs-all-unsubscribe@freebsd.org"