Fix: Patch attached with submission follows:
lippe 2008-06-21 00:01:57 UTC FreeBSD ports repository Modified files: biology Makefile Added files: biology/ssaha Makefile distinfo pkg-descr pkg-plist biology/ssaha/files patch-GlobalDefinitions.cpp patch-GlobalDefinitions.h patch-HashTable.cpp patch-HashTableGeneric.cpp patch-HashTablePacked.cpp patch-HashTablePacked.h patch-HashTableTranslated.cpp patch-MatchAligner.cpp patch-MatchAligner.h patch-MatchStore.h patch-MatchStoreGapped.h patch-MatchStoreUngapped.h patch-QueryManager.cpp patch-QueryManager.h patch-README patch-SSAHAMain.cpp patch-SSAHAMain.h patch-SequenceEncoder.cpp patch-SequenceReader.cpp patch-SequenceReader.h patch-SequenceReaderFasta.cpp patch-SequenceReaderFasta.h patch-SequenceReaderFilter.h patch-SequenceReaderLocal.cpp patch-SequenceReaderMulti.cpp patch-SequenceReaderMulti.h patch-SequenceReaderString.h patch-makefile patch-testHashTableNoOverlap.cpp patch-testQueryManager.cpp patch-testSequenceReaderFasta.cpp Log: SSAHA is a software tool for very fast matching and alignment of DNA sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit) Revision Changes Path 1.102 +1 -0 ports/biology/Makefile 1.1 +33 -0 ports/biology/ssaha/Makefile (new) 1.1 +3 -0 ports/biology/ssaha/distinfo (new) 1.1 +11 -0 ports/biology/ssaha/files/patch-GlobalDefinitions.cpp (new) 1.1 +82 -0 ports/biology/ssaha/files/patch-GlobalDefinitions.h (new) 1.1 +20 -0 ports/biology/ssaha/files/patch-HashTable.cpp (new) 1.1 +48 -0 ports/biology/ssaha/files/patch-HashTableGeneric.cpp (new) 1.1 +29 -0 ports/biology/ssaha/files/patch-HashTablePacked.cpp (new) 1.1 +16 -0 ports/biology/ssaha/files/patch-HashTablePacked.h (new) 1.1 +77 -0 ports/biology/ssaha/files/patch-HashTableTranslated.cpp (new) 1.1 +94 -0 ports/biology/ssaha/files/patch-MatchAligner.cpp (new) 1.1 +33 -0 ports/biology/ssaha/files/patch-MatchAligner.h (new) 1.1 +54 -0 ports/biology/ssaha/files/patch-MatchStore.h (new) 1.1 +25 -0 ports/biology/ssaha/files/patch-MatchStoreGapped.h (new) 1.1 +13 -0 ports/biology/ssaha/files/patch-MatchStoreUngapped.h (new) 1.1 +54 -0 ports/biology/ssaha/files/patch-QueryManager.cpp (new) 1.1 +19 -0 ports/biology/ssaha/files/patch-QueryManager.h (new) 1.1 +13 -0 ports/biology/ssaha/files/patch-README (new) 1.1 +48 -0 ports/biology/ssaha/files/patch-SSAHAMain.cpp (new) 1.1 +19 -0 ports/biology/ssaha/files/patch-SSAHAMain.h (new) 1.1 +75 -0 ports/biology/ssaha/files/patch-SequenceEncoder.cpp (new) 1.1 +20 -0 ports/biology/ssaha/files/patch-SequenceReader.cpp (new) 1.1 +11 -0 ports/biology/ssaha/files/patch-SequenceReader.h (new) 1.1 +32 -0 ports/biology/ssaha/files/patch-SequenceReaderFasta.cpp (new) 1.1 +11 -0 ports/biology/ssaha/files/patch-SequenceReaderFasta.h (new) 1.1 +20 -0 ports/biology/ssaha/files/patch-SequenceReaderFilter.h (new) 1.1 +28 -0 ports/biology/ssaha/files/patch-SequenceReaderLocal.cpp (new) 1.1 +30 -0 ports/biology/ssaha/files/patch-SequenceReaderMulti.cpp (new) 1.1 +13 -0 ports/biology/ssaha/files/patch-SequenceReaderMulti.h (new) 1.1 +26 -0 ports/biology/ssaha/files/patch-SequenceReaderString.h (new) 1.1 +15 -0 ports/biology/ssaha/files/patch-makefile (new) 1.1 +178 -0 ports/biology/ssaha/files/patch-testHashTableNoOverlap.cpp (new) 1.1 +20 -0 ports/biology/ssaha/files/patch-testQueryManager.cpp (new) 1.1 +171 -0 ports/biology/ssaha/files/patch-testSequenceReaderFasta.cpp (new) 1.1 +11 -0 ports/biology/ssaha/pkg-descr (new) 1.1 +9 -0 ports/biology/ssaha/pkg-plist (new) _______________________________________________ cvs-all@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/cvs-all To unsubscribe, send any mail to "cvs-all-unsubscribe@freebsd.org"
State Changed From-To: open->closed Committed. Thanks!