Hello, It seems that java/jdk1(5|6) forget to add some paths to the shared library search paths (?), so when you build the port and try to import lucene it says that a shared object is not found : jcigar@bccm-it ~ % python Python 2.5.2 (r252:60911, Sep 9 2008, 09:50:48) [GCC 4.2.1 20070719 [FreeBSD]] on freebsd7 Type "help", "copyright", "credits" or "license" for more information. Fix: To fix the problem I created a file /usr/local/libdata/ldconfig/jdk1.5.0 with the following: jcigar@bccm-it ~ % cat /usr/local/libdata/ldconfig/jdk1.5.0 /usr/local/jdk1.5.0/jre/lib/i386 /usr/local/jdk1.5.0/jre/lib/i386/server /usr/local/jdk1.5.0/jre/lib/i386/client then sudo /etc/rc.d/ldconfig restart How-To-Repeat: Build the port and >>> import lucene
Responsible Changed From-To: freebsd-ports-bugs->clsung Over to maintainer (via the GNATS Auto Assign Tool)
I'm having the exact same problem with this port. Did the maintainer not have this issue? Anyway, fix follows. diablo-jdk1.5.0 didn't work for me, by the way, resulting is a strange segfault when I tried to use it to build PyLucene. --- jcc/setup.py.orig 2008-10-30 12:59:16.000000000 -0400 +++ jcc/setup.py 2008-10-30 13:27:06.000000000 -0400 @@ -95,6 +95,8 @@ '/usr/jdk/instances/jdk1.6.0/include/solaris'], 'win32': ['o:/Java/jdk1.6.0_02/include', 'o:/Java/jdk1.6.0_02/include/win32'], + 'freebsd7': ['/usr/local/diablo-jdk1.6.0/include', + '/usr/local/diablo-jdk1.6.0/include/freebsd'], } CFLAGS = { @@ -103,6 +105,7 @@ 'sunos5': ['-features=iddollar', '-erroff=badargtypel2w,wbadinitl,wvarhidemem'], 'win32': [], + 'freebsd7': ['-fno-strict-aliasing'], } # added to CFLAGS when JCC invoked with --debug @@ -111,6 +114,7 @@ 'linux2': ['-O0', '-g', '-DDEBUG'], 'sunos5': ['-DDEBUG'], 'win32': ['/Od', '/DDEBUG'], + 'freebsd7': ['-O0', '-g', '-DDEBUG'], } LFLAGS = { @@ -127,7 +131,10 @@ 'sunos5': ['-L/usr/jdk/instances/jdk1.6.0/jre/lib/i386', '-ljava', '-L/usr/jdk/instances/jdk1.6.0/jre/lib/i386/client', '-ljvm', '-R/usr/jdk/instances/jdk1.6.0/jre/lib/i386:/usr/jdk/instances/jre/lib/i386/client'], - 'win32': ['/LIBPATH:o:/Java/jdk1.6.0_02/lib', 'jvm.lib'] + 'win32': ['/LIBPATH:o:/Java/jdk1.6.0_02/lib', 'jvm.lib'], + 'freebsd7': ['-L/usr/local/diablo-jdk1.6.0/jre/lib/i386', '-ljava', '-lverify', + '-L/usr/local/diablo-jdk1.6.0/jre/lib/i386/client', '-ljvm', + '-Wl,-rpath=/usr/local/diablo-jdk1.6.0/jre/lib/i386:/usr/local/diablo-jdk1.6.0/jre/lib/i386/client'], } if sys.platform == 'linux2': @@ -138,6 +145,7 @@ 'linux2': ['javac'], 'sunos5': ['javac'], 'win32': ['javac.exe'], + 'freebsd7': ['javac'] }
On Thu, 2008-10-30 at 13:34 -0400, Geoffrey Mainland wrote: > I'm having the exact same problem with this port. Did the maintainer not > have this issue? > > Anyway, fix follows. diablo-jdk1.5.0 didn't work for me, by the way, > resulting is a strange segfault when I tried to use it to build > PyLucene. > Interesting, on my computer I'm able to built it with jdk1.5, but it's totally unusable, a simple: import lucene foo = lucene.StandardAnalyzer() results in a segfault. I tried on a Debian box and it segfaults too, so it's not impossible that PyLucene is totally incompatible with jdk < 1.6 .. > --- jcc/setup.py.orig 2008-10-30 12:59:16.000000000 -0400 > +++ jcc/setup.py 2008-10-30 13:27:06.000000000 -0400 > @@ -95,6 +95,8 @@ > '/usr/jdk/instances/jdk1.6.0/include/solaris'], > 'win32': ['o:/Java/jdk1.6.0_02/include', > 'o:/Java/jdk1.6.0_02/include/win32'], > + 'freebsd7': ['/usr/local/diablo-jdk1.6.0/include', > + '/usr/local/diablo-jdk1.6.0/include/freebsd'], > } > > CFLAGS = { > @@ -103,6 +105,7 @@ > 'sunos5': ['-features=iddollar', > '-erroff=badargtypel2w,wbadinitl,wvarhidemem'], > 'win32': [], > + 'freebsd7': ['-fno-strict-aliasing'], > } > > # added to CFLAGS when JCC invoked with --debug > @@ -111,6 +114,7 @@ > 'linux2': ['-O0', '-g', '-DDEBUG'], > 'sunos5': ['-DDEBUG'], > 'win32': ['/Od', '/DDEBUG'], > + 'freebsd7': ['-O0', '-g', '-DDEBUG'], > } > > LFLAGS = { > @@ -127,7 +131,10 @@ > 'sunos5': ['-L/usr/jdk/instances/jdk1.6.0/jre/lib/i386', '-ljava', > '-L/usr/jdk/instances/jdk1.6.0/jre/lib/i386/client', '-ljvm', > '-R/usr/jdk/instances/jdk1.6.0/jre/lib/i386:/usr/jdk/instances/jre/lib/i386/client'], > - 'win32': ['/LIBPATH:o:/Java/jdk1.6.0_02/lib', 'jvm.lib'] > + 'win32': ['/LIBPATH:o:/Java/jdk1.6.0_02/lib', 'jvm.lib'], > + 'freebsd7': ['-L/usr/local/diablo-jdk1.6.0/jre/lib/i386', '-ljava', '-lverify', > + '-L/usr/local/diablo-jdk1.6.0/jre/lib/i386/client', '-ljvm', > + '-Wl,-rpath=/usr/local/diablo-jdk1.6.0/jre/lib/i386:/usr/local/diablo-jdk1.6.0/jre/lib/i386/client'], > } > > if sys.platform == 'linux2': > @@ -138,6 +145,7 @@ > 'linux2': ['javac'], > 'sunos5': ['javac'], > 'win32': ['javac.exe'], > + 'freebsd7': ['javac'] > } > >
clsung 2008-11-03 09:01:29 UTC FreeBSD ports repository Modified files: devel/py-jcc Makefile Log: - solve the problem by updating the py-jcc's Makefile - bump PORTREVISION (devel/py-jcc) PR: ports/128311 Reviewed by: clsung Revision Changes Path 1.5 +3 -2 ports/devel/py-jcc/Makefile _______________________________________________ cvs-all@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/cvs-all To unsubscribe, send any mail to "cvs-all-unsubscribe@freebsd.org"
Hi Julien, hi Geoffrey, there hasn't been an update on this issue for a while. I'm trying to find out what the state of this is. Can you still reproduce the problem on an up-to-date system? Regards, Stefan
Hi Stefan, I made a "fresh" build right now (7.0-RELEASE), the following are installed : - py25-PyLucene-2.4.0 - py25-jcc-2.1 - jdk-1.5.0.14p8_5,1 - python25-2.5.2_3 The "Shared object "libjava.so" not found" is fixed, but I've still a segmentation fault on my system : jcigar@bccm-it ~ % python Python 2.5.2 (r252:60911, Sep 9 2008, 09:50:48) [GCC 4.2.1 20070719 [FreeBSD]] on freebsd7 Type "help", "copyright", "credits" or "license" for more information. >>> import lucene >>> foo = lucene.StandardAnalyzer() zsh: segmentation fault (core dumped) python jcigar@bccm-it ~ % Best regards and thanks for support, Julien On Thu, 2009-01-08 at 11:59 +0100, Stefan Walter wrote: > Hi Julien, hi Geoffrey, > > there hasn't been an update on this issue for a while. I'm trying to find > out what the state of this is. Can you still reproduce the problem on an > up-to-date system? > > Regards, > Stefan -- Julien Cigar Belgian Biodiversity Platform http://www.biodiversity.be Université Libre de Bruxelles (ULB) Campus de la Plaine CP 257 Bâtiment NO, Bureau 4 N4 115C (Niveau 4) Boulevard du Triomphe, entrée ULB 2 B-1050 Bruxelles Mail: jcigar@ulb.ac.be @biobel: http://biobel.biodiversity.be/person/show/471 Tel : 02 650 57 52
Hi Julien, Julien Cigar, 08.01.09, 12:22h CET: > Hi Stefan, > > I made a "fresh" build right now (7.0-RELEASE), the following are > installed : > - py25-PyLucene-2.4.0 > - py25-jcc-2.1 > - jdk-1.5.0.14p8_5,1 > - python25-2.5.2_3 > > The "Shared object "libjava.so" not found" is fixed, but I've still a > segmentation fault on my system : Thanks for your feedback! Since you reported that it also segfaults on a Linux system, I would suspect it's not a problem with the FreeBSD port and would suggest to set JAVA_VERSION to 1.6+ in the port's Makefile. (Can you verify that that works for you? I would commit it, then.) Regards, Stefan
Hi Stefan, Unfortunately it segfaults on 1.6 too .. : jcigar@scar:/home/jcigar % java -version java version "1.6.0_07" Diablo Java(TM) SE Runtime Environment (build 1.6.0_07-b02) Diablo Java HotSpot(TM) Server VM (build 10.0-b23, mixed mode) jcigar@scar:/home/jcigar % python Python 2.5.2 (r252:60911, Jan 8 2009, 13:55:19) [GCC 4.2.1 20070719 [FreeBSD]] on freebsd7 Type "help", "copyright", "credits" or "license" for more information. >>> import lucene >>> foo=lucene.StandardAnalyzer() zsh: segmentation fault (core dumped) python jcigar@scar:/home/jcigar % (it's on another machine so there are few chances that it's an hardware issue ...) I wonder if I'm the only one to have this "segmentation fault" problem .. ? Best regards, Julien On Thu, 2009-01-08 at 13:34 +0100, Stefan Walter wrote: > Hi Julien, > > Julien Cigar, 08.01.09, 12:22h CET: > > > Hi Stefan, > > > > I made a "fresh" build right now (7.0-RELEASE), the following are > > installed : > > - py25-PyLucene-2.4.0 > > - py25-jcc-2.1 > > - jdk-1.5.0.14p8_5,1 > > - python25-2.5.2_3 > > > > The "Shared object "libjava.so" not found" is fixed, but I've still a > > segmentation fault on my system : > > Thanks for your feedback! Since you reported that it also segfaults on a > Linux system, I would suspect it's not a problem with the FreeBSD port and > would suggest to set JAVA_VERSION to 1.6+ in the port's Makefile. (Can you > verify that that works for you? I would commit it, then.) > > Regards, > Stefan -- Julien Cigar Belgian Biodiversity Platform http://www.biodiversity.be Université Libre de Bruxelles (ULB) Campus de la Plaine CP 257 Bâtiment NO, Bureau 4 N4 115C (Niveau 4) Boulevard du Triomphe, entrée ULB 2 B-1050 Bruxelles Mail: jcigar@ulb.ac.be @biobel: http://biobel.biodiversity.be/person/show/471 Tel : 02 650 57 52
I made a backtrace at http://pastebin.com/f1dcfa6f8 On Thu, 2009-01-08 at 13:34 +0100, Stefan Walter wrote: > Hi Julien, > > Julien Cigar, 08.01.09, 12:22h CET: > > > Hi Stefan, > > > > I made a "fresh" build right now (7.0-RELEASE), the following are > > installed : > > - py25-PyLucene-2.4.0 > > - py25-jcc-2.1 > > - jdk-1.5.0.14p8_5,1 > > - python25-2.5.2_3 > > > > The "Shared object "libjava.so" not found" is fixed, but I've still a > > segmentation fault on my system : > > Thanks for your feedback! Since you reported that it also segfaults on a > Linux system, I would suspect it's not a problem with the FreeBSD port and > would suggest to set JAVA_VERSION to 1.6+ in the port's Makefile. (Can you > verify that that works for you? I would commit it, then.) > > Regards, > Stefan -- Julien Cigar Belgian Biodiversity Platform http://www.biodiversity.be Université Libre de Bruxelles (ULB) Campus de la Plaine CP 257 Bâtiment NO, Bureau 4 N4 115C (Niveau 4) Boulevard du Triomphe, entrée ULB 2 B-1050 Bruxelles Mail: jcigar@ulb.ac.be @biobel: http://biobel.biodiversity.be/person/show/471 Tel : 02 650 57 52
mmh forgot it, it's totally useless. On Thu, 2009-01-08 at 14:24 +0100, Julien Cigar wrote: > I made a backtrace at http://pastebin.com/f1dcfa6f8 > > On Thu, 2009-01-08 at 13:34 +0100, Stefan Walter wrote: > > Hi Julien, > > > > Julien Cigar, 08.01.09, 12:22h CET: > > > > > Hi Stefan, > > > > > > I made a "fresh" build right now (7.0-RELEASE), the following are > > > installed : > > > - py25-PyLucene-2.4.0 > > > - py25-jcc-2.1 > > > - jdk-1.5.0.14p8_5,1 > > > - python25-2.5.2_3 > > > > > > The "Shared object "libjava.so" not found" is fixed, but I've still a > > > segmentation fault on my system : > > > > Thanks for your feedback! Since you reported that it also segfaults on a > > Linux system, I would suspect it's not a problem with the FreeBSD port and > > would suggest to set JAVA_VERSION to 1.6+ in the port's Makefile. (Can you > > verify that that works for you? I would commit it, then.) > > > > Regards, > > Stefan -- Julien Cigar Belgian Biodiversity Platform http://www.biodiversity.be Université Libre de Bruxelles (ULB) Campus de la Plaine CP 257 Bâtiment NO, Bureau 4 N4 115C (Niveau 4) Boulevard du Triomphe, entrée ULB 2 B-1050 Bruxelles Mail: jcigar@ulb.ac.be @biobel: http://biobel.biodiversity.be/person/show/471 Tel : 02 650 57 52
I do not use py-lucene myself, but searching a bit for "pylucene" and "segmentation fault" turned up, for instance, the thread at [1]. Does the procedure for initialization described there fix the problem for you? Regards, Stefan [1]: http://www.mail-archive.com/pylucene-dev@osafoundation.org/msg01507.html
Hi Stefan, OK, it works with the lucene.initVM(lucene.CLASSPATH) trick .. thanks ! Best regards, Julien On Thu, 2009-01-08 at 15:38 +0100, Stefan Walter wrote: > I do not use py-lucene myself, but searching a bit for "pylucene" and > "segmentation fault" turned up, for instance, the thread at [1]. Does the > procedure for initialization described there fix the problem for you? > > Regards, > Stefan > > [1]: http://www.mail-archive.com/pylucene-dev@osafoundation.org/msg01507.html -- Julien Cigar Belgian Biodiversity Platform http://www.biodiversity.be Université Libre de Bruxelles (ULB) Campus de la Plaine CP 257 Bâtiment NO, Bureau 4 N4 115C (Niveau 4) Boulevard du Triomphe, entrée ULB 2 B-1050 Bruxelles Mail: jcigar@ulb.ac.be @biobel: http://biobel.biodiversity.be/person/show/471 Tel : 02 650 57 52
State Changed From-To: open->closed Problem resolved.