Bio::NEXUS package provides an object-oriented, Perl-based applications programming interface (API) to the NEXUS file format of Maddison, et al., 1997 (Syst. Biol. 46:590-621). NEXUS is a powerful and extensible format designed for use in evolutionary analysis, including the analysis of molecular sequence data as well as classical morphological and life-history data. NEXUS is the input or output format for software such as PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and so on. This package also contains the demonstration applications nexplot.pl (plot character data with a tree) and nextool.pl (allowing programmatic editing, e.g., selecting particular clades or subsets of data). WWW: http://search.cpan.org/dist/Bio-NEXUS/ Fix: Patch attached with submission follows:
Sorry, I mistake the email to wenheping@gmail.comw, it should be wenheping@gmail.com
Responsible Changed From-To: freebsd-ports-bugs->miwi I'll take it.
State Changed From-To: open->closed New port added, with minor changes. Thanks!
miwi 2009-08-22 20:39:51 UTC FreeBSD ports repository Modified files: biology Makefile Added files: biology/p5-Bio-NEXUS Makefile distinfo pkg-descr pkg-plist Log: Bio::NEXUS package provides an object-oriented, Perl-based applications programming interface (API) to the NEXUS file format of Maddison, et al., 1997 (Syst. Biol. 46:590-621). NEXUS is a powerful and extensible format designed for use in evolutionary analysis, including the analysis of molecular sequence data as well as classical morphological and life-history data. NEXUS is the input or output format for software such as PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and so on. This package also contains the demonstration applications nexplot.pl (plot character data with a tree) and nextool.pl (allowing programmatic editing, e.g., selecting particular clades or subsets of data). WWW: http://search.cpan.org/dist/Bio-NEXUS/ PR: ports/137983 Submitted by: Wen Heping <wenheping at gmail.com> Revision Changes Path 1.112 +1 -0 ports/biology/Makefile 1.1 +38 -0 ports/biology/p5-Bio-NEXUS/Makefile (new) 1.1 +3 -0 ports/biology/p5-Bio-NEXUS/distinfo (new) 1.1 +14 -0 ports/biology/p5-Bio-NEXUS/pkg-descr (new) 1.1 +35 -0 ports/biology/p5-Bio-NEXUS/pkg-plist (new) _______________________________________________ cvs-all@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/cvs-all To unsubscribe, send any mail to "cvs-all-unsubscribe@freebsd.org"