Bug 169924 - Maintainer update: science/minc
Summary: Maintainer update: science/minc
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: Normal Affects Only Me
Assignee: Niclas Zeising
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2012-07-17 01:00 UTC by Jason W. Bacon
Modified: 2012-07-20 17:40 UTC (History)
0 users

See Also:


Attachments
file.diff (1.69 KB, patch)
2012-07-17 01:00 UTC, Jason W. Bacon
no flags Details | Diff
ports.science.minc.diff (3.52 KB, patch)
2012-07-20 16:37 UTC, Niclas Zeising
no flags Details | Diff

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Description Jason W. Bacon freebsd_committer freebsd_triage 2012-07-17 01:00:24 UTC
Routine upgrade, add conflicts.

Fix: Diff attached.

Patch attached with submission follows:
Comment 1 Niclas Zeising freebsd_committer freebsd_triage 2012-07-18 21:52:31 UTC
Responsible Changed
From-To: freebsd-ports-bugs->zeising

I'll take it.
Comment 2 Niclas Zeising freebsd_committer freebsd_triage 2012-07-20 16:37:23 UTC
Hi!
http://people.freebsd.org/~kwm/patch-conversion__minctoecat__machine_indep.c 
is a patch to fix build of minc with clang, is it ok to include it?
I also changed the WWW line in pkg-descr and pkg-message to point to 
http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC since the previous 
link was dead.  Attached patch with your update and these changes are 
attached, so you can check it and let me know if you approve.
-- 
Niclas Zeising
Comment 3 Jason W. Bacon freebsd_committer freebsd_triage 2012-07-20 16:59:23 UTC
Yes, it's fine.

Thanks,

     -J

On 07/20/12 10:37, Niclas Zeising wrote:
> Hi!
> http://people.freebsd.org/~kwm/patch-conversion__minctoecat__machine_indep.c 
> is a patch to fix build of minc with clang, is it ok to include it?
> I also changed the WWW line in pkg-descr and pkg-message to point to 
> http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC since the previous 
> link was dead.  Attached patch with your update and these changes are 
> attached, so you can check it and let me know if you approve.


-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jason W. Bacon
jwbacon@tds.net
http://personalpages.tds.net/~jwbacon
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Comment 4 dfilter service freebsd_committer freebsd_triage 2012-07-20 17:32:22 UTC
Author: zeising
Date: Fri Jul 20 16:32:07 2012
New Revision: 301233
URL: http://svn.freebsd.org/changeset/ports/301233

Log:
  Update to version 1.5.1 [1]
  Fix build with clang [2]
  Change WWW in pkg-descr and pkg-message to point to current web side [3]
  
  PR:		ports/169924 [1]
  Submitted by:	Jason Bacon <jwbacon@tds.net> (maintainer) [1], kwm [2], [3]
  Approved by:	maintainer, kwm (mentor)

Added:
  head/science/minc/files/
  head/science/minc/files/patch-conversion__minctoecat__machine_indep.c   (contents, props changed)
Modified:
  head/science/minc/Makefile
  head/science/minc/distinfo
  head/science/minc/pkg-descr
  head/science/minc/pkg-message

Modified: head/science/minc/Makefile
==============================================================================
--- head/science/minc/Makefile	Fri Jul 20 15:21:06 2012	(r301232)
+++ head/science/minc/Makefile	Fri Jul 20 16:32:07 2012	(r301233)
@@ -16,11 +16,9 @@
 # Of course, the netcdf port must be installed first.
 
 PORTNAME=	minc
-PORTVERSION=	1.4
-PORTREVISION=	2
+PORTVERSION=	1.5.1
 CATEGORIES=	science biology
-MASTER_SITES=	http://www.bic.mni.mcgill.ca/software/distribution/packages/ \
-		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
+MASTER_SITES=	http://www.nitrc.org/frs/downloadlink.php/400/
 
 MAINTAINER=	jwbacon@tds.net
 COMMENT=	Medical Imaging NetCDF
@@ -34,7 +32,9 @@ CPPFLAGS+=	-I${LOCALBASE}/include
 LDFLAGS+=	-L${LOCALBASE}/lib
 CONFIGURE_ARGS=	--enable-static=yes --enable-shared=yes
 
-CONFLICTS=	minc-2*
+CONFLICTS=	minc-2* zh-tk-[0-9]*
+
+WRKSRC=		${WRKDIR}/${PORTNAME}-1.5
 
 MAN1=	dcm2mnc.1 \
 	ecattominc.1 \
@@ -49,6 +49,7 @@ MAN1=	dcm2mnc.1 \
 	mincexpand.1 \
 	mincextract.1 \
 	mincheader.1 \
+	minchistory.1 \
 	mincinfo.1 \
 	minclookup.1 \
 	mincmakescalar.1 \
@@ -73,6 +74,8 @@ MAN1=	dcm2mnc.1 \
 
 MAN3=	ParseArgv.3
 
+FETCH_ARGS+=	-F
+
 post-install:
 	@${CAT} ${PKGMESSAGE}
 

Modified: head/science/minc/distinfo
==============================================================================
--- head/science/minc/distinfo	Fri Jul 20 15:21:06 2012	(r301232)
+++ head/science/minc/distinfo	Fri Jul 20 16:32:07 2012	(r301233)
@@ -1,2 +1,2 @@
-SHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f
-SIZE (minc-1.4.tar.gz) = 1213768
+SHA256 (minc-1.5.1.tar.gz) = 3ca7045c6eaa32daea184af3f78e30969bb0a0dddce2a1b292ba1624d23a61c9
+SIZE (minc-1.5.1.tar.gz) = 1356462

Added: head/science/minc/files/patch-conversion__minctoecat__machine_indep.c
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/minc/files/patch-conversion__minctoecat__machine_indep.c	Fri Jul 20 16:32:07 2012	(r301233)
@@ -0,0 +1,11 @@
+--- conversion/minctoecat/machine_indep.c.orig	2012-07-20 17:16:13.000000000 +0200
++++ conversion/minctoecat/machine_indep.c	2012-07-20 17:17:48.000000000 +0200
+@@ -84,7 +84,7 @@
+ 	bufr[1] =  ret >>16;
+ }
+ #else  /* BIG ENDIAN : sun hp sgi*/
+-ftovaxf(orig,number)
++void ftovaxf(orig,number)
+   unsigned short number[2];
+   float orig;
+ {

Modified: head/science/minc/pkg-descr
==============================================================================
--- head/science/minc/pkg-descr	Fri Jul 20 15:21:06 2012	(r301232)
+++ head/science/minc/pkg-descr	Fri Jul 20 16:32:07 2012	(r301233)
@@ -4,7 +4,7 @@ Neelin at the McConnell Brain Imaging Ce
 Institute. Many others have contributed to the design and implementation 
 MINC over the years.
 
-WWW: http://www.bic.mni.mcgill.ca/software/minc/
+WWW: http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
 
 Port maintainer: Jason W. Bacon
 		 jwbacon@tds.net

Modified: head/science/minc/pkg-message
==============================================================================
--- head/science/minc/pkg-message	Fri Jul 20 15:21:06 2012	(r301232)
+++ head/science/minc/pkg-message	Fri Jul 20 16:32:07 2012	(r301233)
@@ -4,5 +4,5 @@ port maintainer: jwbacon@tds.net
 
 For MINC usage, please visit the MINC WEB site at
 
-http://www.bic.mni.mcgill.ca/software/minc/
+http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
 =============================================================================
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Comment 5 Niclas Zeising freebsd_committer freebsd_triage 2012-07-20 17:35:32 UTC
State Changed
From-To: open->closed

Committed. Thanks!