Bug 195591 - [NEW PORT] biology/htslib
Summary: [NEW PORT] biology/htslib
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Pawel Pekala
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2014-12-02 23:51 UTC by cartwright
Modified: 2014-12-14 22:40 UTC (History)
1 user (show)

See Also:

Attachments
Patch to add biology/htslib as a new port. (6.04 KB, patch)
2014-12-02 23:51 UTC, cartwright 		no flags Details | Diff
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Description cartwright 2014-12-02 23:51:14 UTC 
Created attachment 150112 [details]
Patch to add biology/htslib as a new port.

htslib is a C library for high-throughput sequencing data formats.  I have created a port for it and am willing to maintain it.
Comment 1 commit-hook freebsd_committer freebsd_triage 2014-12-14 22:35:35 UTC 
A commit references this bug:

Author: pawel
Date: Sun Dec 14 22:35:10 UTC 2014
New revision: 374729
URL: https://svnweb.freebsd.org/changeset/ports/374729

Log:
  HTSlib is an implementation of a unified C library for accessing common file
  formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
  data. It is the core library used by samtools and bcftools.

  WWW: http://www.htslib.org/

  PR:		195591
  Submitted by:	Reed A. Cartwright <cartwright@asu.edu>

Changes:
  head/biology/Makefile
  head/biology/htslib/
  head/biology/htslib/Makefile
  head/biology/htslib/distinfo
  head/biology/htslib/files/
  head/biology/htslib/files/patch-Makefile
  head/biology/htslib/pkg-descr
  head/biology/htslib/pkg-plist
Comment 2 commit-hook freebsd_committer freebsd_triage 2014-12-14 22:40:37 UTC 
A commit references this bug:

Author: pawel
Date: Sun Dec 14 22:39:45 UTC 2014
New revision: 46094
URL: https://svnweb.freebsd.org/changeset/doc/46094

Log:
  For biology/htslib

  PR:		195591

Changes:
  head/en_US.ISO8859-1/articles/contributors/contrib.additional.xml