Bug 203158 - [new port] biology/bwa: First of many genomics ports on the way
Summary: [new port] biology/bwa: First of many genomics ports on the way
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Ruslan Makhmatkhanov
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-09-16 18:17 UTC by Jason W. Bacon
Modified: 2015-09-25 18:48 UTC (History)
1 user (show)

See Also:

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2015-09-16 18:17 UTC, Jason W. Bacon 		no flags Details
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Description Jason W. Bacon freebsd_committer freebsd_triage 2015-09-16 18:17:41 UTC 
Created attachment 161120 [details]
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BWA is a program for aligning sequencing reads against a large reference
genome (e.g. human genome). It has two major components, one for read shorter
than 150bp and the other for longer reads.
Comment 1 commit-hook freebsd_committer freebsd_triage 2015-09-25 18:39:47 UTC 
A commit references this bug:

Author: rm
Date: Fri Sep 25 18:39:39 UTC 2015
New revision: 397851
URL: https://svnweb.freebsd.org/changeset/ports/397851

Log:
  BWA is a program for aligning sequencing reads against a large reference
  genome (e.g. human genome). It has two major components, one for read shorter
  than 150bp and the other for longer reads.

  WWW: http://sourceforge.net/projects/bio-bwa/

  PR:		203158
  Submitted by:	Jason Bacon <jwbacon@tds.net>

Changes:
  head/biology/Makefile
  head/biology/bwa/
  head/biology/bwa/Makefile
  head/biology/bwa/distinfo
  head/biology/bwa/files/
  head/biology/bwa/files/patch-Makefile
  head/biology/bwa/files/patch-bwt_lite.c
  head/biology/bwa/files/patch-bwtgap.c
  head/biology/bwa/files/patch-bwtgap.h
  head/biology/bwa/pkg-descr
Comment 2 Ruslan Makhmatkhanov freebsd_committer freebsd_triage 2015-09-25 18:48:57 UTC 
Committed, thank you!