Bug 258316 - biology/emboss: Add support script to set path
Summary: biology/emboss: Add support script to set path
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Wen Heping
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-09-06 12:49 UTC by Jason W. Bacon
Modified: 2021-09-06 15:17 UTC (History)
0 users

See Also:
bugzilla: maintainer-feedback? (wen)

Attachments
Shell script (693 bytes, application/x-shellscript)
2021-09-06 12:49 UTC, Jason W. Bacon 		no flags Details
View All Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.
Description Jason W. Bacon freebsd_committer freebsd_triage 2021-09-06 12:49:13 UTC 
Created attachment 227709 [details]
Shell script

Would you consider adding the attached script to the installation for the users' convenience?
Comment 1 Wen Heping freebsd_committer freebsd_triage 2021-09-06 12:51:12 UTC 
Approved.  Would you commit it ?
Thanks !

wen
Comment 2 commit-hook freebsd_committer freebsd_triage 2021-09-06 14:25:03 UTC 
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=fa2e0b8c66d459b05b1a6624cd482950f9ea3376

commit fa2e0b8c66d459b05b1a6624cd482950f9ea3376
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2021-09-06 14:21:44 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2021-09-06 14:21:44 +0000

    biology/emboss: Add emboss-shell: Run subshell with proper PATH

    Also silence portlint and stage-qa warnings

    PR:             258316
    Approved by:    wen

 biology/emboss/Makefile                            | 10 +++++----
 biology/emboss/distinfo                            |  1 +
 biology/emboss/files/emboss-shell.in (new +x)      | 26 ++++++++++++++++++++++
 biology/emboss/files/patch-Makefile.in             | 16 ++++++-------
 biology/emboss/files/patch-emboss-Makefile.in      |  6 ++---
 ...mplate => patch-emboss_emboss.default.template} |  4 ++--
 biology/emboss/pkg-plist                           |  1 +
 7 files changed, 47 insertions(+), 17 deletions(-)
Comment 3 Jason W. Bacon freebsd_committer freebsd_triage 2021-09-06 14:25:55 UTC 
Done, thanks for the quick response!
Comment 4 commit-hook freebsd_committer freebsd_triage 2021-09-06 15:17:14 UTC 
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=e47c577da6ce40e629041a92a327d9648ef72bd0

commit e47c577da6ce40e629041a92a327d9648ef72bd0
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2021-09-06 15:13:03 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2021-09-06 15:13:03 +0000

    biology/emboss: Put emboss-shell in default PATH

    PREFIX is overridden by default in the port Makefile, so PREFIX/bin
    is not normally in PATH.  The purpose of emboss-shell is to prepend
    PREFIX/bin to PATH to give access to emboss tools.

    Also fix tcsh detection.

    PR:             258316

 biology/emboss/Makefile              | 3 ++-
 biology/emboss/distinfo              | 2 +-
 biology/emboss/files/emboss-shell.in | 2 +-
 biology/emboss/pkg-plist             | 2 +-
 4 files changed, 5 insertions(+), 4 deletions(-)