Created attachment 229241 [details] patch This version builds fine on powerpc64le, probably also on arm*. -msse2 is not necessary on i386. MAKE_JOBS_UNSAFE is probably not necessary, builds fine with -j32.
Fetch fails: => Attempting to fetch https://codeload.github.com/ekg/intervaltree/tar.gz/b90527f?dummy=/ekg-intervaltree-b90527f_GH0.tar.gz fetch: 72540: No such file or directory fetch: https://codeload.github.com/ekg/intervaltree/tar.gz/b90527f?dummy=/ekg-intervaltree-b90527f_GH0.tar.gz: size unknown fetch: https://codeload.github.com/ekg/intervaltree/tar.gz/b90527f?dummy=/ekg-intervaltree-b90527f_GH0.tar.gz: size of remote file is not known ekg-intervaltree-b90527f_GH0.tar.gz 70 kB 950 kBps 00s => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/ekg-intervaltree-b90527f_GH0.tar.gz fetch: 72540: No such file or directory fetch: http://distcache.FreeBSD.org/ports-distfiles/ekg-intervaltree-b90527f_GH0.tar.gz: Not Found => Couldn't fetch it - please try to retrieve this => port manually into /usr/ports/distfiles/ and try again. *** Error code 1 Stop. make: stopped in /usr/ports/wip/freebayes
Created attachment 229245 [details] v2 Corrected GH_TUPLES and patches from files were mostly removed.
Created attachment 229250 [details] v3 -msse2 is not necessary anymore for i386.
Created attachment 229251 [details] v4 Sorry, I sent a patch for vcflib instead.
A commit in branch main references this bug: URL: https://cgit.FreeBSD.org/ports/commit/?id=dc64b13129b889531be2dae60218484f9444cf92 commit dc64b13129b889531be2dae60218484f9444cf92 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-11-03 20:49:05 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-11-03 20:49:05 +0000 biology/freebayes: Update to 1.3.5 Fixes build on powerpc64 and aarch64, possibly others. Changes: https://github.com/freebayes/freebayes/tags PR: 259627 Reported by: pkubaj biology/freebayes/Makefile | 53 +++++++++--------- biology/freebayes/distinfo | 60 ++++++++++----------- biology/freebayes/files/patch-Makefile (gone) | 20 ------- .../files/patch-SeqLib_bwa_Makefile (gone) | 14 ----- .../files/patch-SeqLib_bwa_bwt__lite.c (gone) | 10 ---- .../files/patch-SeqLib_bwa_bwtgap.h (gone) | 10 ---- .../files/patch-SeqLib_bwa_kthread.c (gone) | 10 ---- .../freebayes/files/patch-SeqLib_bwa_rle.h (gone) | 11 ---- .../files/patch-SeqLib_fermi-lite_Makefile (gone) | 12 ----- .../files/patch-SeqLib_fermi-lite_rle.h (gone) | 11 ---- .../files/patch-SeqLib_htslib_Makefile (gone) | 38 ------------- biology/freebayes/files/patch-src_Makefile (gone) | 62 ---------------------- .../freebayes/files/patch-vcflib_Makefile (gone) | 13 ----- 13 files changed, 53 insertions(+), 271 deletions(-)
Thanks!