Bug 284923 - biology/py-crossmap: update 0.5.4 => 0.7.3
Summary: biology/py-crossmap: update 0.5.4 => 0.7.3
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Jason W. Bacon
URL: https://pypi.org/project/CrossMap/#hi...
Keywords:
Depends on:
Blocks:
 
Reported: 2025-02-20 13:32 UTC by Älven
Modified: 2025-03-04 16:22 UTC (History)
1 user (show)

See Also:
bugzilla: maintainer-feedback? (jwb)

Attachments
[PATCH] biology/py-crossmap: update 0.5.4 => 0.7.3 (149.99 KB, patch)
2025-02-20 13:32 UTC, Älven 		alster: maintainer-approval? (jwb)
 Details | Diff
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Description Älven 2025-02-20 13:32:03 UTC 
Created attachment 257691 [details]
[PATCH] biology/py-crossmap: update 0.5.4 => 0.7.3
Comment 1 Jason W. Bacon freebsd_committer freebsd_triage 2025-02-21 13:34:38 UTC 
Build failing due to dependencies on both cython versions.
Comment 2 commit-hook freebsd_committer freebsd_triage 2025-03-04 13:16:14 UTC 
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=886844b5ecf827d919cf53ba0875b0ebd6e2a29a

commit 886844b5ecf827d919cf53ba0875b0ebd6e2a29a
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2025-03-04 13:12:42 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2025-03-04 13:12:42 +0000

    biology/py-crossmap: Update to 0.7.3

    Several fixes and enhancements since 0.5.4
    Changes: https://github.com/liguowang/CrossMap/releases

    PR:             284923
    Reported by:    alster@vinterdalen.se

 biology/py-crossmap/Makefile                       |    8 +-
 biology/py-crossmap/distinfo                       |    6 +-
 biology/py-crossmap/files/patch-2to3 (gone)        | 2955 --------------------
 .../files/patch-lib_cmmodule_twoList.py (gone)     |   18 -
 biology/py-crossmap/files/patch-setup.py (gone)    |   10 -
 5 files changed, 6 insertions(+), 2991 deletions(-)
Comment 3 Jason W. Bacon freebsd_committer freebsd_triage 2025-03-04 16:22:26 UTC 
Failure to build from source is not a regression.  Same problem was occurring with the prior version.  Poudriere builds work fine.  Further work is needed to resolve conflict between cython versions.