Attachment 143291 Details for Bug 190508 – Patch for emboss

[patch] Patch for emboss

emboss.patch (text/plain), 102.86 KB, created by Muhammad Moinur Rahman on 2014-06-02 13:42:05 UTC

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Filename:

MIME Type:

Creator: Muhammad Moinur Rahman

Created: 2014-06-02 13:42:05 UTC

Size: 102.86 KB

patch

obsolete

>diff -ruN /usr/ports//biology/emboss/Makefile ./Makefile
>--- /usr/ports//biology/emboss/Makefile	2014-05-05 15:45:36.000000000 +0600
>+++ ./Makefile	2014-06-02 16:03:43.720251652 +0600
>@@ -2,17 +2,17 @@
> # $FreeBSD: head/biology/emboss/Makefile 352986 2014-05-05 09:45:36Z bapt $
> 
> PORTNAME=	emboss
>-PORTVERSION=	6.2.0
>-RELEASE=	${PORTNAME:tu}-${PORTVERSION}
>-PORTREVISION=	3
>+PORTVERSION=	6.6.0
> CATEGORIES=	biology
> MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/
>-DISTNAME=	${RELEASE}
>+DISTNAME=	${PORTNAME:tu}-${PORTVERSION}
> DIST_SUBDIR=	${PORTNAME}
> 
> MAINTAINER=	wen@FreeBSD.org
> COMMENT=	A collection of open source tools for genetic sequence analysis
> 
>+LICENSE=	GPLv2
>+
> BUILD_DEPENDS=	clustalw:${PORTSDIR}/biology/clustalw \
> 		primer3:${PORTSDIR}/biology/primer3
> LIB_DEPENDS=	libgd.so:${PORTSDIR}/graphics/gd \
>@@ -22,37 +22,37 @@
> 
> PREFIX?=	${LOCALBASE}/emboss
> NO_MTREE=	yes
>-USES=		gmake
>+USES=		gmake libtool iconv
> USE_SUBMAKE=	yes
> GNU_CONFIGURE=	yes
>-USE_AUTOTOOLS=	libtool
> USE_LDCONFIG=	yes
> SUB_FILES=	pkg-message
> SUB_LIST=	PREFIX=${PREFIX} DATADIR=${DATADIR}
>+LDFLAGS+=	-L${LOCALBASE}/lib
>+CONFIGURE_ARGS+=${ICONV_CONFIGURE_ARG}
> 
> DOCSDIR=	${PREFIX}/share/${PORTNAME:tu}/doc
> DATADIR=	${PREFIX}/share/${PORTNAME:tu}
> 
>-CONFIGURE_ARGS+= --with-docroot=${DOCSDIR}
>-
>-.if !defined(WITHOUT_X11)
>-USE_XORG=	x11
>-USES+=		motif
>-LIB_DEPENDS+=	libgd.so:${PORTSDIR}/graphics/gd \
>+OPTIONS_DEFINE=	DOCS X11
>+OPTIONS_DEFAULT=	X11
>+DOCS_CONFIGURE_ON=	--with-docroot=${DOCSDIR}
>+X11_USE=	XORG=x11
>+X11_USES=	motif
>+X11_LIB_DEPENDS=	libgd.so:${PORTSDIR}/graphics/gd \
> 		libpng15.so:${PORTSDIR}/graphics/png
>-.else
>-CONFIGURE_ARGS+= --without-x
>-.endif
>+X11_CONFIGURE_OFF=	--without-x
> 
>-DOC_DIRS=	doc/manuals doc/tutorials doc/programs/text doc/programs/html
> CONFIG_FILE=	${WRKSRC}/emboss/emboss.default.template
> 
>-NO_STAGE=	yes
>+post-patch:
>+	@${REINPLACE_CMD} -e 's/-liconv/${ICONV_LIB}/' ${WRKSRC}/configure
>+
> pre-install:
>-	@ ${REINPLACE_CMD} -e 's#%%DATADIR%%#${DATADIR}#' ${CONFIG_FILE}
>+	@ ${REINPLACE_CMD} -e 's#%%DATADIR%%#${PREFIX}/share/${PORTNAME:tu}#' ${CONFIG_FILE}
> 
> post-install:
>-	${CHOWN} ${SHAREOWN}:${SHAREGRP} ${DATADIR}/emboss.default.template
>-	@ ${CAT} ${PKGMESSAGE}
>+	${INSTALL_DATA} ${CONFIG_FILE} ${STAGEDIR}${DATADIR}
>+	${CHOWN} ${SHAREOWN}:${SHAREGRP} ${STAGEDIR}${DATADIR}/emboss.default.template
> 
> .include <bsd.port.mk>
>diff -ruN /usr/ports//biology/emboss/distinfo ./distinfo
>--- /usr/ports//biology/emboss/distinfo	2014-01-22 21:30:13.000000000 +0600
>+++ ./distinfo	2014-05-29 01:01:01.039802470 +0600
>@@ -1,2 +1,2 @@
>-SHA256 (emboss/EMBOSS-6.2.0.tar.gz) = 4726371c0bcf3e232a5ee6b334e74b8c284dcbdcb176a475e77699515f8d122b
>-SIZE (emboss/EMBOSS-6.2.0.tar.gz) = 23430911
>+SHA256 (emboss/EMBOSS-6.6.0.tar.gz) = 7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e
>+SIZE (emboss/EMBOSS-6.6.0.tar.gz) = 117962028
>diff -ruN /usr/ports//biology/emboss/files/patch-Makefile.in ./files/patch-Makefile.in
>--- /usr/ports//biology/emboss/files/patch-Makefile.in	1970-01-01 06:00:00.000000000 +0600
>+++ ./files/patch-Makefile.in	2014-05-29 03:28:56.213190447 +0600
>@@ -0,0 +1,30 @@
>+--- Makefile.in.orig	2014-05-29 03:27:28.070199330 +0600
>++++ Makefile.in	2014-05-29 03:28:00.167196553 +0600
>+@@ -756,7 +756,7 @@
>+ 
>+ install-exec-am:
>+ 	@$(NORMAL_INSTALL)
>+-	$(MAKE) $(AM_MAKEFLAGS) install-exec-hook
>++	$(MAKE) $(AM_MAKEFLAGS)
>+ install-html: install-html-recursive
>+ 
>+ install-html-am:
>+@@ -810,7 +810,7 @@
>+ 	distclean-libtool distclean-tags distcleancheck distdir \
>+ 	distuninstallcheck dvi dvi-am html html-am info info-am \
>+ 	install install-am install-data install-data-am install-dvi \
>+-	install-dvi-am install-exec install-exec-am install-exec-hook \
>++	install-dvi-am install-exec install-exec-am \
>+ 	install-html install-html-am install-info install-info-am \
>+ 	install-man install-pdf install-pdf-am install-ps \
>+ 	install-ps-am install-strip installcheck installcheck-am \
>+@@ -832,9 +832,6 @@
>+ 	tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; )
>+ 	tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf )
>+ 
>+-install-exec-hook:
>+-	$(bindir)/embossupdate
>+-
>+ # Tell versions [3.59,3.63) of GNU make to not export all variables.
>+ # Otherwise a system limit (for SysV at least) may be exceeded.
>+ .NOEXPORT:
>diff -ruN /usr/ports//biology/emboss/files/patch-emboss-Makefile.in ./files/patch-emboss-Makefile.in
>--- /usr/ports//biology/emboss/files/patch-emboss-Makefile.in	1970-01-01 06:00:00.000000000 +0600
>+++ ./files/patch-emboss-Makefile.in	2014-05-29 14:43:32.463402014 +0600
>@@ -0,0 +1,10 @@
>+--- emboss/Makefile.in.orig	2014-05-29 14:42:20.540406535 +0600
>++++ emboss/Makefile.in	2014-05-29 14:42:42.364404204 +0600
>+@@ -3216,7 +3216,6 @@
>+ 	$(am__append_3) ../ajax/pcre/libepcre.la \
>+ 	../plplot/libeplplot.la $(XLIB)
>+ dist_pkgdata_DATA = \
>+-emboss.default.template \
>+ emboss.standard \
>+ server.biomart \
>+ server.dasregistry \
>diff -ruN /usr/ports//biology/emboss/pkg-plist ./pkg-plist
>--- /usr/ports//biology/emboss/pkg-plist	2014-01-22 21:16:56.000000000 +0600
>+++ ./pkg-plist	2014-05-30 15:44:31.902194786 +0600
>@@ -1,6 +1,8 @@
> bin/aaindexextract
> bin/abiview
> bin/acdc
>+bin/acdgalaxy
>+bin/acdlog
> bin/acdpretty
> bin/acdtable
> bin/acdtrace
>@@ -8,11 +10,16 @@
> bin/aligncopy
> bin/aligncopypair
> bin/antigenic
>+bin/assemblyget
> bin/backtranambig
> bin/backtranseq
> bin/banana
> bin/biosed
> bin/btwisted
>+bin/cachedas
>+bin/cachedbfetch
>+bin/cacheebeyesearch
>+bin/cacheensembl
> bin/cai
> bin/chaos
> bin/charge
>@@ -35,28 +42,50 @@
> bin/dbifasta
> bin/dbiflat
> bin/dbigcg
>+bin/dbtell
>+bin/dbxcompress
>+bin/dbxedam
> bin/dbxfasta
> bin/dbxflat
> bin/dbxgcg
>+bin/dbxobo
>+bin/dbxreport
>+bin/dbxresource
>+bin/dbxstat
>+bin/dbxtax
>+bin/dbxuncompress
> bin/degapseq
> bin/density
> bin/descseq
> bin/diffseq
>-bin/digest
> bin/distmat
> bin/dotmatcher
> bin/dotpath
> bin/dottup
> bin/dreg
>+bin/drfinddata
>+bin/drfindformat
>+bin/drfindid
>+bin/drfindresource
>+bin/drget
>+bin/drtext
>+bin/edamdef
>+bin/edamhasinput
>+bin/edamhasoutput
>+bin/edamisformat
>+bin/edamisid
>+bin/edamname
> bin/edialign
> bin/einverted
> bin/embossdata
>+bin/embossupdate
> bin/embossversion
> bin/emma
> bin/emowse
> bin/entret
> bin/epestfind
> bin/eprimer3
>+bin/eprimer32
> bin/equicktandem
> bin/est2genome
> bin/etandem
>@@ -64,7 +93,9 @@
> bin/extractfeat
> bin/extractseq
> bin/featcopy
>+bin/featmerge
> bin/featreport
>+bin/feattext
> bin/findkm
> bin/freak
> bin/fuzznuc
>@@ -73,10 +104,13 @@
> bin/garnier
> bin/geecee
> bin/getorf
>+bin/godef
>+bin/goname
> bin/helixturnhelix
> bin/hmoment
> bin/iep
> bin/infoalign
>+bin/infoassembly
> bin/infobase
> bin/inforesidue
> bin/infoseq
>@@ -113,11 +147,22 @@
> bin/nthseqset
> bin/octanol
> bin/oddcomp
>+bin/ontocount
>+bin/ontoget
>+bin/ontogetcommon
>+bin/ontogetdown
>+bin/ontogetobsolete
>+bin/ontogetroot
>+bin/ontogetsibs
>+bin/ontogetup
>+bin/ontoisobsolete
>+bin/ontotext
> bin/palindrome
> bin/pasteseq
> bin/patmatdb
> bin/patmatmotifs
> bin/pepcoil
>+bin/pepdigest
> bin/pepinfo
> bin/pepnet
> bin/pepstats
>@@ -141,21 +186,27 @@
> bin/rebaseextract
> bin/recoder
> bin/redata
>+bin/refseqget
> bin/remap
> bin/restover
> bin/restrict
> bin/revseq
>-bin/runJemboss.csh
>+bin/runJemboss.sh
> bin/seealso
>+bin/seqcount
> bin/seqmatchall
> bin/seqret
> bin/seqretsetall
> bin/seqretsplit
>+bin/seqxref
>+bin/seqxrefget
>+bin/servertell
> bin/showalign
> bin/showdb
> bin/showfeat
> bin/showorf
> bin/showpep
>+bin/showserver
> bin/showseq
> bin/shuffleseq
> bin/sigcleave
>@@ -171,7 +222,13 @@
> bin/stssearch
> bin/supermatcher
> bin/syco
>+bin/taxget
>+bin/taxgetdown
>+bin/taxgetrank
>+bin/taxgetspecies
>+bin/taxgetup
> bin/tcode
>+bin/textget
> bin/textsearch
> bin/tfextract
> bin/tfm
>@@ -184,6 +241,8 @@
> bin/trimspace
> bin/twofeat
> bin/union
>+bin/urlget
>+bin/variationget
> bin/vectorstrip
> bin/water
> bin/whichdb
>@@ -191,18 +250,34 @@
> bin/wordcount
> bin/wordfinder
> bin/wordmatch
>+bin/wossdata
>+bin/wossinput
> bin/wossname
>+bin/wossoperation
>+bin/wossoutput
>+bin/wossparam
>+bin/wosstopic
>+bin/xmlget
>+bin/xmltext
> bin/yank
> include/ajacd.h
> include/ajalign.h
> include/ajarch.h
> include/ajarr.h
>+include/ajassem.h
>+include/ajassemdata.h
>+include/ajassemdb.h
>+include/ajassemread.h
>+include/ajassemwrite.h
> include/ajassert.h
> include/ajax.h
>+include/ajbamindex.h
> include/ajbase.h
> include/ajcall.h
>+include/ajcigar.h
> include/ajcod.h
> include/ajdan.h
>+include/ajdas.h
> include/ajdefine.h
> include/ajdmx.h
> include/ajdom.h
>@@ -210,48 +285,113 @@
> include/ajexcept.h
> include/ajfeat.h
> include/ajfeatdata.h
>+include/ajfeatdb.h
>+include/ajfeatread.h
>+include/ajfeatwrite.h
> include/ajfile.h
> include/ajfiledata.h
> include/ajfileio.h
> include/ajfmt.h
>+include/ajftp.h
> include/ajgraph.h
> include/ajgraphstruct.h
> include/ajhist.h
>+include/ajhttp.h
> include/ajindex.h
> include/ajjava.h
>+include/ajlib.h
> include/ajlist.h
>+include/ajmart.h
> include/ajmath.h
> include/ajmatrices.h
> include/ajmem.h
> include/ajmess.h
> include/ajnam.h
> include/ajnexus.h
>+include/ajobo.h
>+include/ajobodata.h
>+include/ajobodb.h
>+include/ajoboread.h
>+include/ajobowrite.h
> include/ajpat.h
> include/ajpdb.h
> include/ajpdbio.h
> include/ajphylo.h
>+include/ajquery.h
>+include/ajquerydata.h
> include/ajrange.h
>+include/ajrefseq.h
>+include/ajrefseqdata.h
>+include/ajrefseqdb.h
>+include/ajrefseqread.h
>+include/ajrefseqwrite.h
> include/ajreg.h
> include/ajreport.h
>+include/ajresource.h
>+include/ajresourcedata.h
>+include/ajresourcedb.h
>+include/ajresourceread.h
>+include/ajresourcewrite.h
> include/ajseq.h
> include/ajseqabi.h
>+include/ajseqbam.h
> include/ajseqdata.h
> include/ajseqdb.h
> include/ajseqread.h
> include/ajseqtype.h
> include/ajseqwrite.h
>+include/ajsoap.h
> include/ajsort.h
> include/ajsql.h
> include/ajstr.h
> include/ajsys.h
> include/ajtable.h
>+include/ajtagval.h
>+include/ajtax.h
>+include/ajtaxdata.h
>+include/ajtaxdb.h
>+include/ajtaxread.h
>+include/ajtaxwrite.h
>+include/ajtext.h
>+include/ajtextdata.h
>+include/ajtextdb.h
>+include/ajtextread.h
>+include/ajtextwrite.h
> include/ajtime.h
> include/ajtranslate.h
> include/ajtree.h
>+include/ajurl.h
>+include/ajurldata.h
>+include/ajurldb.h
>+include/ajurlread.h
>+include/ajurlwrite.h
> include/ajutil.h
>+include/ajvar.h
>+include/ajvarbcf.h
>+include/ajvardata.h
>+include/ajvardb.h
>+include/ajvarread.h
>+include/ajvarwrite.h
> include/ajvector.h
>-include/crc32.h
>-include/deflate.h
>+include/ajxml.h
>+include/ajxmldata.h
>+include/ajxmldb.h
>+include/ajxmlread.h
>+include/ajxmlwrite.h
>+include/eexpat/ascii.h
>+include/eexpat/asciitab.h
>+include/eexpat/expat.h
>+include/eexpat/expat_config.h
>+include/eexpat/expat_external.h
>+include/eexpat/expatemboss.h
>+include/eexpat/iasciitab.h
>+include/eexpat/internal.h
>+include/eexpat/latin1tab.h
>+include/eexpat/nametab.h
>+include/eexpat/utf8tab.h
>+include/eexpat/xmlrole.h
>+include/eexpat/xmltok.h
>+include/eexpat/xmltok_impl.h
> include/embaln.h
> include/embcom.h
> include/embcons.h
>@@ -278,6 +418,7 @@
> include/embshow.h
> include/embsig.h
> include/embword.h
>+include/ensalign.h
> include/ensanalysis.h
> include/ensassemblyexception.h
> include/ensassembly.h
>@@ -297,10 +438,18 @@
> include/ensexternaldatabase.h
> include/ensfeature.h
> include/ensgene.h
>+include/ensgvallele.h
>+include/ensgvattribute.h
>+include/ensgvbaseadaptor.h
>+include/ensgvdatabaseadaptor.h
> include/ensgvdata.h
>+include/ensgvgenotype.h
> include/ensgvindividual.h
> include/ensgvpopulation.h
> include/ensgvsample.h
>+include/ensgvsource.h
>+include/ensgvsynonym.h
>+include/ensgvvariation.h
> include/ensintron.h
> include/enskaryotype.h
> include/ensmapper.h
>@@ -308,24 +457,39 @@
> include/ensmetacoordinate.h
> include/ensmetainformation.h
> include/ensmiscellaneous.h
>+include/ensontology.h
>+include/ensoperon.h
> include/ensprediction.h
> include/ensprojectionsegment.h
>+include/ensprotein.h
> include/ensqcalignment.h
>+include/ensqcdasfeature.h
> include/ensqcdatabase.h
> include/ensqc.h
> include/ensqcsequence.h
>+include/ensqcsubmission.h
>+include/ensqcvariation.h
> include/ensregistry.h
> include/ensrepeat.h
> include/ensseqregion.h
> include/enssequence.h
> include/enssequenceedit.h
>+include/enssimple.h
> include/ensslice.h
>+include/enssoftware.h
> include/ensstorable.h
> include/enstable.h
> include/enstranslation.h
> include/enstranscript.h
> include/ensutility.h
> include/ensvariation.h
>+include/epcre/pcre.h
>+include/epcre/pcre_config.h
>+include/epcre/pcre_internal.h
>+include/epcre/pcre_printint.src
>+include/epcre/pcreemboss.h
>+include/epcre/pcreposix.h
>+include/epcre/ucp.h
> include/eplplot/disptab.h
> include/eplplot/drivers.h
> include/eplplot/metadefs.h
>@@ -344,85 +508,78 @@
> include/eplplot/plunicode-type1.h
> include/eplplot/plxwd.h
> include/eplplot/ps.h
>-include/expat.h
>-include/expat_external.h
>-include/expatemboss.h
>-include/inffast.h
>-include/inffixed.h
>-include/inflate.h
>-include/inftrees.h
>-include/pcre.h
>-include/pcre_config.h
>-include/pcreemboss.h
>-include/pcre_internal.h
>-include/pcre_printint.src
>-include/pcreposix.h
>-include/trees.h
>-include/ucp.h
>-include/zconf.h
>-include/zlibemboss.h
>-include/zlib.h
>-include/zutil.h
>-lib/libacd.so.6
>-lib/libacd.so
>-lib/libacd.la
>+include/ezlib/crc32.h
>+include/ezlib/deflate.h
>+include/ezlib/gzguts.h
>+include/ezlib/inffast.h
>+include/ezlib/inffixed.h
>+include/ezlib/inflate.h
>+include/ezlib/inftrees.h
>+include/ezlib/trees.h
>+include/ezlib/zconf.h
>+include/ezlib/zlib.h
>+include/ezlib/zlibemboss.h
>+include/ezlib/zutil.h
> lib/libacd.a
>+lib/libacd.so
>+lib/libacd.so.6
>+lib/libacd.so.6.0.5
> lib/libajax.a
>-lib/libajax.la
> lib/libajax.so
> lib/libajax.so.6
>+lib/libajax.so.6.0.5
> lib/libajaxdb.a
>-lib/libajaxdb.la
> lib/libajaxdb.so
> lib/libajaxdb.so.6
>+lib/libajaxdb.so.6.0.5
> lib/libajaxg.a
>-lib/libajaxg.la
> lib/libajaxg.so
> lib/libajaxg.so.6
>+lib/libajaxg.so.6.0.5
> lib/libeexpat.a
>-lib/libeexpat.la
> lib/libeexpat.so
>-lib/libeexpat.so.2
>+lib/libeexpat.so.1
>+lib/libeexpat.so.1.1.0
> lib/libensembl.a
>-lib/libensembl.la
> lib/libensembl.so
> lib/libensembl.so.6
>+lib/libensembl.so.6.0.5
> lib/libepcre.a
>-lib/libepcre.la
> lib/libepcre.so
> lib/libepcre.so.7
>+lib/libepcre.so.7.0.9
> lib/libeplplot.a
>-lib/libeplplot.la
> lib/libeplplot.so
>-lib/libeplplot.so.5
>+lib/libeplplot.so.3
>+lib/libeplplot.so.3.2.7
> lib/libezlib.a
>-lib/libezlib.la
> lib/libezlib.so
>-lib/libezlib.so.2
>+lib/libezlib.so.1
>+lib/libezlib.so.1.1.0
> lib/libnucleus.a
>-lib/libnucleus.la
> lib/libnucleus.so
> lib/libnucleus.so.6
>+lib/libnucleus.so.6.0.5
> %%DATADIR%%/acd/aaindexextract.acd
> %%DATADIR%%/acd/abiview.acd
> %%DATADIR%%/acd/acdc.acd
>-%%DATADIR%%/acd/acdlog.acd
> %%DATADIR%%/acd/acdpretty.acd
>-%%DATADIR%%/acd/acdrelations.acd
> %%DATADIR%%/acd/acdtable.acd
> %%DATADIR%%/acd/acdtrace.acd
> %%DATADIR%%/acd/acdvalid.acd
>-%%DATADIR%%/acd/ajbad.acd
>-%%DATADIR%%/acd/ajfeatest.acd
>-%%DATADIR%%/acd/ajtest.acd
> %%DATADIR%%/acd/aligncopy.acd
> %%DATADIR%%/acd/aligncopypair.acd
> %%DATADIR%%/acd/antigenic.acd
>+%%DATADIR%%/acd/assemblyget.acd
> %%DATADIR%%/acd/backtranambig.acd
> %%DATADIR%%/acd/backtranseq.acd
> %%DATADIR%%/acd/banana.acd
> %%DATADIR%%/acd/biosed.acd
> %%DATADIR%%/acd/btwisted.acd
>+%%DATADIR%%/acd/cachedas.acd
>+%%DATADIR%%/acd/cachedbfetch.acd
>+%%DATADIR%%/acd/cacheebeyesearch.acd
>+%%DATADIR%%/acd/cacheensembl.acd
> %%DATADIR%%/acd/cai.acd
> %%DATADIR%%/acd/chaos.acd
> %%DATADIR%%/acd/charge.acd
>@@ -433,11 +590,9 @@
> %%DATADIR%%/acd/codcopy.acd
> %%DATADIR%%/acd/coderet.acd
> %%DATADIR%%/acd/codes.english
>-%%DATADIR%%/acd/complex.acd
> %%DATADIR%%/acd/compseq.acd
> %%DATADIR%%/acd/cons.acd
> %%DATADIR%%/acd/consambig.acd
>-%%DATADIR%%/acd/corbatest.acd
> %%DATADIR%%/acd/cpgplot.acd
> %%DATADIR%%/acd/cpgreport.acd
> %%DATADIR%%/acd/cusp.acd
>@@ -448,11 +603,18 @@
> %%DATADIR%%/acd/dbifasta.acd
> %%DATADIR%%/acd/dbiflat.acd
> %%DATADIR%%/acd/dbigcg.acd
>+%%DATADIR%%/acd/dbtell.acd
>+%%DATADIR%%/acd/dbxcompress.acd
>+%%DATADIR%%/acd/dbxedam.acd
> %%DATADIR%%/acd/dbxfasta.acd
> %%DATADIR%%/acd/dbxflat.acd
> %%DATADIR%%/acd/dbxgcg.acd
>+%%DATADIR%%/acd/dbxobo.acd
> %%DATADIR%%/acd/dbxreport.acd
>+%%DATADIR%%/acd/dbxresource.acd
> %%DATADIR%%/acd/dbxstat.acd
>+%%DATADIR%%/acd/dbxtax.acd
>+%%DATADIR%%/acd/dbxuncompress.acd
> %%DATADIR%%/acd/degapseq.acd
> %%DATADIR%%/acd/density.acd
> %%DATADIR%%/acd/descseq.acd
>@@ -463,18 +625,29 @@
> %%DATADIR%%/acd/dotpath.acd
> %%DATADIR%%/acd/dottup.acd
> %%DATADIR%%/acd/dreg.acd
>-%%DATADIR%%/acd/edamclean.acd
>+%%DATADIR%%/acd/drfinddata.acd
>+%%DATADIR%%/acd/drfindformat.acd
>+%%DATADIR%%/acd/drfindid.acd
>+%%DATADIR%%/acd/drfindresource.acd
>+%%DATADIR%%/acd/drget.acd
>+%%DATADIR%%/acd/drtext.acd
>+%%DATADIR%%/acd/edamdef.acd
>+%%DATADIR%%/acd/edamhasinput.acd
>+%%DATADIR%%/acd/edamhasoutput.acd
>+%%DATADIR%%/acd/edamisformat.acd
>+%%DATADIR%%/acd/edamisid.acd
>+%%DATADIR%%/acd/edamname.acd
> %%DATADIR%%/acd/edialign.acd
> %%DATADIR%%/acd/einverted.acd
> %%DATADIR%%/acd/embossdata.acd
> %%DATADIR%%/acd/embossversion.acd
>+%%DATADIR%%/acd/embossupdate.acd
> %%DATADIR%%/acd/emma.acd
> %%DATADIR%%/acd/emowse.acd
>-%%DATADIR%%/acd/ensembltest.acd
>-%%DATADIR%%/acd/entrails.acd
> %%DATADIR%%/acd/entret.acd
> %%DATADIR%%/acd/epestfind.acd
> %%DATADIR%%/acd/eprimer3.acd
>+%%DATADIR%%/acd/eprimer32.acd
> %%DATADIR%%/acd/equicktandem.acd
> %%DATADIR%%/acd/est2genome.acd
> %%DATADIR%%/acd/etandem.acd
>@@ -482,7 +655,9 @@
> %%DATADIR%%/acd/extractfeat.acd
> %%DATADIR%%/acd/extractseq.acd
> %%DATADIR%%/acd/featcopy.acd
>+%%DATADIR%%/acd/featmerge.acd
> %%DATADIR%%/acd/featreport.acd
>+%%DATADIR%%/acd/feattext.acd
> %%DATADIR%%/acd/findkm.acd
> %%DATADIR%%/acd/freak.acd
> %%DATADIR%%/acd/fuzznuc.acd
>@@ -491,16 +666,17 @@
> %%DATADIR%%/acd/garnier.acd
> %%DATADIR%%/acd/geecee.acd
> %%DATADIR%%/acd/getorf.acd
>+%%DATADIR%%/acd/godef.acd
>+%%DATADIR%%/acd/goname.acd
> %%DATADIR%%/acd/groups.standard
> %%DATADIR%%/acd/helixturnhelix.acd
>-%%DATADIR%%/acd/histogramtest.acd
> %%DATADIR%%/acd/hmoment.acd
> %%DATADIR%%/acd/iep.acd
> %%DATADIR%%/acd/infoalign.acd
>+%%DATADIR%%/acd/infoassembly.acd
> %%DATADIR%%/acd/infobase.acd
> %%DATADIR%%/acd/inforesidue.acd
> %%DATADIR%%/acd/infoseq.acd
>-%%DATADIR%%/acd/intconv.acd
> %%DATADIR%%/acd/isochore.acd
> %%DATADIR%%/acd/jaspextract.acd
> %%DATADIR%%/acd/jaspscan.acd
>@@ -523,7 +699,6 @@
> %%DATADIR%%/acd/mwfilter.acd
> %%DATADIR%%/acd/needle.acd
> %%DATADIR%%/acd/needleall.acd
>-%%DATADIR%%/acd/newcoils.acd
> %%DATADIR%%/acd/newcpgreport.acd
> %%DATADIR%%/acd/newcpgseek.acd
> %%DATADIR%%/acd/newseq.acd
>@@ -536,14 +711,22 @@
> %%DATADIR%%/acd/nthseqset.acd
> %%DATADIR%%/acd/octanol.acd
> %%DATADIR%%/acd/oddcomp.acd
>-%%DATADIR%%/acd/origsplitter.acd
>-%%DATADIR%%/acd/origunion.acd
>+%%DATADIR%%/acd/ontocount.acd
>+%%DATADIR%%/acd/ontoget.acd
>+%%DATADIR%%/acd/ontogetcommon.acd
>+%%DATADIR%%/acd/ontogetdown.acd
>+%%DATADIR%%/acd/ontogetobsolete.acd
>+%%DATADIR%%/acd/ontogetroot.acd
>+%%DATADIR%%/acd/ontogetsibs.acd
>+%%DATADIR%%/acd/ontogetup.acd
>+%%DATADIR%%/acd/ontoisobsolete.acd
>+%%DATADIR%%/acd/ontotext.acd
> %%DATADIR%%/acd/palindrome.acd
> %%DATADIR%%/acd/pasteseq.acd
> %%DATADIR%%/acd/patmatdb.acd
> %%DATADIR%%/acd/patmatmotifs.acd
>-%%DATADIR%%/acd/patmattest.acd
> %%DATADIR%%/acd/pepcoil.acd
>+%%DATADIR%%/acd/pepdigest.acd
> %%DATADIR%%/acd/pepinfo.acd
> %%DATADIR%%/acd/pepnet.acd
> %%DATADIR%%/acd/pepstats.acd
>@@ -556,8 +739,6 @@
> %%DATADIR%%/acd/preg.acd
> %%DATADIR%%/acd/prettyplot.acd
> %%DATADIR%%/acd/prettyseq.acd
>-%%DATADIR%%/acd/prima.acd
>-%%DATADIR%%/acd/primers.acd
> %%DATADIR%%/acd/primersearch.acd
> %%DATADIR%%/acd/printsextract.acd
> %%DATADIR%%/acd/profit.acd
>@@ -569,28 +750,28 @@
> %%DATADIR%%/acd/rebaseextract.acd
> %%DATADIR%%/acd/recoder.acd
> %%DATADIR%%/acd/redata.acd
>+%%DATADIR%%/acd/refseqget.acd
> %%DATADIR%%/acd/remap.acd
> %%DATADIR%%/acd/restover.acd
> %%DATADIR%%/acd/restrict.acd
> %%DATADIR%%/acd/revseq.acd
> %%DATADIR%%/acd/sections.standard
> %%DATADIR%%/acd/seealso.acd
>-%%DATADIR%%/acd/seqinfo.acd
>+%%DATADIR%%/acd/seqcount.acd
> %%DATADIR%%/acd/seqmatchall.acd
> %%DATADIR%%/acd/seqret.acd
>-%%DATADIR%%/acd/seqretall.acd
>-%%DATADIR%%/acd/seqretallfeat.acd
>-%%DATADIR%%/acd/seqretset.acd
> %%DATADIR%%/acd/seqretsetall.acd
>-%%DATADIR%%/acd/seqretsingle.acd
> %%DATADIR%%/acd/seqretsplit.acd
>-%%DATADIR%%/acd/seqrettype.acd
>+%%DATADIR%%/acd/seqxref.acd
>+%%DATADIR%%/acd/seqxrefget.acd
>+%%DATADIR%%/acd/servertell.acd
> %%DATADIR%%/acd/showalign.acd
> %%DATADIR%%/acd/showdb.acd
> %%DATADIR%%/acd/showfeat.acd
> %%DATADIR%%/acd/showorf.acd
> %%DATADIR%%/acd/showpep.acd
> %%DATADIR%%/acd/showseq.acd
>+%%DATADIR%%/acd/showserver.acd
> %%DATADIR%%/acd/shuffleseq.acd
> %%DATADIR%%/acd/sigcleave.acd
> %%DATADIR%%/acd/silent.acd
>@@ -601,13 +782,17 @@
> %%DATADIR%%/acd/skipseq.acd
> %%DATADIR%%/acd/splitsource.acd
> %%DATADIR%%/acd/splitter.acd
>-%%DATADIR%%/acd/sqltest.acd
> %%DATADIR%%/acd/stretcher.acd
> %%DATADIR%%/acd/stssearch.acd
> %%DATADIR%%/acd/supermatcher.acd
> %%DATADIR%%/acd/syco.acd
>+%%DATADIR%%/acd/taxget.acd
>+%%DATADIR%%/acd/taxgetdown.acd
>+%%DATADIR%%/acd/taxgetrank.acd
>+%%DATADIR%%/acd/taxgetspecies.acd
>+%%DATADIR%%/acd/taxgetup.acd
> %%DATADIR%%/acd/tcode.acd
>-%%DATADIR%%/acd/testplot.acd
>+%%DATADIR%%/acd/textget.acd
> %%DATADIR%%/acd/textsearch.acd
> %%DATADIR%%/acd/tfextract.acd
> %%DATADIR%%/acd/tfm.acd
>@@ -615,13 +800,14 @@
> %%DATADIR%%/acd/tmap.acd
> %%DATADIR%%/acd/tranalign.acd
> %%DATADIR%%/acd/transeq.acd
>-%%DATADIR%%/acd/treetypedisplay.acd
> %%DATADIR%%/acd/trimest.acd
> %%DATADIR%%/acd/trimseq.acd
> %%DATADIR%%/acd/trimspace.acd
> %%DATADIR%%/acd/twofeat.acd
> %%DATADIR%%/acd/union.acd
>+%%DATADIR%%/acd/urlget.acd
> %%DATADIR%%/acd/variables.standard
>+%%DATADIR%%/acd/variationget.acd
> %%DATADIR%%/acd/vectorstrip.acd
> %%DATADIR%%/acd/water.acd
> %%DATADIR%%/acd/whichdb.acd
>@@ -629,7 +815,15 @@
> %%DATADIR%%/acd/wordcount.acd
> %%DATADIR%%/acd/wordfinder.acd
> %%DATADIR%%/acd/wordmatch.acd
>+%%DATADIR%%/acd/wossdata.acd
>+%%DATADIR%%/acd/wossinput.acd
> %%DATADIR%%/acd/wossname.acd
>+%%DATADIR%%/acd/wossoperation.acd
>+%%DATADIR%%/acd/wossoutput.acd
>+%%DATADIR%%/acd/wossparam.acd
>+%%DATADIR%%/acd/wosstopic.acd
>+%%DATADIR%%/acd/xmlget.acd
>+%%DATADIR%%/acd/xmltext.acd
> %%DATADIR%%/acd/yank.acd
> %%DATADIR%%/data/AAINDEX/dummyfile
> %%DATADIR%%/data/CODONS/Cut.index
>@@ -882,6 +1076,7 @@
> %%DATADIR%%/data/CODONS/Eysp.cut
> %%DATADIR%%/data/CODONS/Ezebrafish.cut
> %%DATADIR%%/data/CODONS/Ezma.cut
>+%%DATADIR%%/data/DRCAT.dat
> %%DATADIR%%/data/EBLOSUM30
> %%DATADIR%%/data/EBLOSUM35
> %%DATADIR%%/data/EBLOSUM40
>@@ -898,8 +1093,10 @@
> %%DATADIR%%/data/EBLOSUM85
> %%DATADIR%%/data/EBLOSUM90
> %%DATADIR%%/data/EBLOSUMN
>+%%DATADIR%%/data/EDAM.obo
> %%DATADIR%%/data/EDNAFULL
> %%DATADIR%%/data/EDNAMAT
>+%%DATADIR%%/data/EDNASIMPLE
> %%DATADIR%%/data/EGC.0
> %%DATADIR%%/data/EGC.1
> %%DATADIR%%/data/EGC.10
>@@ -986,10 +1183,10 @@
> %%DATADIR%%/data/Eenergy.dat
> %%DATADIR%%/data/Efeatures.embl
> %%DATADIR%%/data/Efeatures.emboss
>-%%DATADIR%%/data/Efeatures.gff
>+%%DATADIR%%/data/Efeatures.gff2
>+%%DATADIR%%/data/Efeatures.gff2protein
> %%DATADIR%%/data/Efeatures.gff3
> %%DATADIR%%/data/Efeatures.gff3protein
>-%%DATADIR%%/data/Efeatures.gffprotein
> %%DATADIR%%/data/Efeatures.pir
> %%DATADIR%%/data/Efeatures.refseqp
> %%DATADIR%%/data/Efeatures.protein
>@@ -1007,9 +1204,9 @@
> %%DATADIR%%/data/Enakai.dat
> %%DATADIR%%/data/EnsemblAliases.dat
> %%DATADIR%%/data/EnsemblIdentifiers.dat
>-%%DATADIR%%/data/Etags.gff3protein
> %%DATADIR%%/data/Epepcoil.dat
> %%DATADIR%%/data/Epk.dat
>+%%DATADIR%%/data/Epkexpasy.dat
> %%DATADIR%%/data/Epprofile
> %%DATADIR%%/data/Eprior1.plib
> %%DATADIR%%/data/Eprior30.plib
>@@ -1019,9 +1216,10 @@
> %%DATADIR%%/data/Esig.pro
> %%DATADIR%%/data/Etags.embl
> %%DATADIR%%/data/Etags.emboss
>-%%DATADIR%%/data/Etags.gff
>+%%DATADIR%%/data/Etags.gff2
>+%%DATADIR%%/data/Etags.gff2protein
> %%DATADIR%%/data/Etags.gff3
>-%%DATADIR%%/data/Etags.gffprotein
>+%%DATADIR%%/data/Etags.gff3protein
> %%DATADIR%%/data/Etags.pir
> %%DATADIR%%/data/Etags.protein
> %%DATADIR%%/data/Etags.refseqp
>@@ -1032,589 +1230,193 @@
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> %%DATADIR%%/data/JASPAR_CORE/dummyfile
> %%DATADIR%%/data/JASPAR_FAM/dummyfile
>+%%DATADIR%%/data/JASPAR_PBM/dummyfile
>+%%DATADIR%%/data/JASPAR_PBM_HLH/dummyfile
>+%%DATADIR%%/data/JASPAR_PBM_HOMEO/dummyfile
> %%DATADIR%%/data/JASPAR_PHYLOFACTS/dummyfile
> %%DATADIR%%/data/JASPAR_POLII/dummyfile
> %%DATADIR%%/data/JASPAR_SPLICE/dummyfile
> %%DATADIR%%/data/Matrices.nucleotide
> %%DATADIR%%/data/Matrices.protein
> %%DATADIR%%/data/Matrices.proteinstructure
>+%%DATADIR%%/data/OBO/chebi.obo
>+%%DATADIR%%/data/OBO/eco.obo
>+%%DATADIR%%/data/OBO/go.obo
>+%%DATADIR%%/data/OBO/pathway.obo
>+%%DATADIR%%/data/OBO/ro.obo
>+%%DATADIR%%/data/OBO/so.obo
>+%%DATADIR%%/data/OBO/software.obo
> %%DATADIR%%/data/PRINTS/dummyfile
> %%DATADIR%%/data/PROSITE/dummyfile
>-%%DATADIR%%/data/REBASE/dummyfile
>+%%DATADIR%%/data/REBASE/embossre.equ
> %%DATADIR%%/data/SSSUB
>+%%DATADIR%%/data/TAXONOMY/division.dmp
>+%%DATADIR%%/data/TAXONOMY/gencode.dmp
>+%%DATADIR%%/data/TAXONOMY/merged.dmp
>+%%DATADIR%%/data/TAXONOMY/names.dmp
>+%%DATADIR%%/data/TAXONOMY/nodes.dmp
> %%DATADIR%%/data/edialignmat
>-%%DATADIR%%/data/embossre.equ
> %%DATADIR%%/data/tp400_dna
> %%DATADIR%%/data/tp400_prot
> %%DATADIR%%/data/tp400_trans
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>-%%DOCSDIR%%/programs/html/abiview.html
>-%%DOCSDIR%%/programs/html/acd_group.html
>-%%DOCSDIR%%/programs/html/acdc.html
>-%%DOCSDIR%%/programs/html/acdlog.html
>-%%DOCSDIR%%/programs/html/acdpretty.html
>-%%DOCSDIR%%/programs/html/acdtable.html
>-%%DOCSDIR%%/programs/html/acdtrace.html
>-%%DOCSDIR%%/programs/html/acdvalid.html
>-%%DOCSDIR%%/programs/html/ajtest.html
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>-%%DOCSDIR%%/programs/html/aligncopypair.html
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>-%%DOCSDIR%%/programs/html/alignment_dot_plots_group.html
>-%%DOCSDIR%%/programs/html/alignment_global_group.html
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>-%%DOCSDIR%%/programs/html/alignment_multiple_group.html
>-%%DOCSDIR%%/programs/html/antigenic.html
>-%%DOCSDIR%%/programs/html/assembly_fragment_assembly_group.html
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>-%%DOCSDIR%%/programs/html/banana.html
>-%%DOCSDIR%%/programs/html/biosed.html
>-%%DOCSDIR%%/programs/html/btwisted.html
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>-%%DOCSDIR%%/programs/html/cirdna.html
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>-%%DOCSDIR%%/programs/html/codcopy.html
>-%%DOCSDIR%%/programs/html/coderet.html
>-%%DOCSDIR%%/programs/html/complex.html
>-%%DOCSDIR%%/programs/html/compseq.html
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>-%%DOCSDIR%%/programs/html/cpgplot.html
>-%%DOCSDIR%%/programs/html/cpgreport.html
>-%%DOCSDIR%%/programs/html/cusp.html
>-%%DOCSDIR%%/programs/html/cutgextract.html
>-%%DOCSDIR%%/programs/html/cutseq.html
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>-%%DOCSDIR%%/programs/html/dan.html
>-%%DOCSDIR%%/programs/html/dbiblast.html
>-%%DOCSDIR%%/programs/html/dbifasta.html
>-%%DOCSDIR%%/programs/html/dbiflat.html
>-%%DOCSDIR%%/programs/html/dbigcg.html
>-%%DOCSDIR%%/programs/html/dbxfasta.html
>-%%DOCSDIR%%/programs/html/dbxflat.html
>-%%DOCSDIR%%/programs/html/dbxgcg.html
>-%%DOCSDIR%%/programs/html/degapseq.html
>-%%DOCSDIR%%/programs/html/density.html
>-%%DOCSDIR%%/programs/html/descseq.html
>-%%DOCSDIR%%/programs/html/diffseq.html
>-%%DOCSDIR%%/programs/html/digest.html
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>-%%DOCSDIR%%/programs/html/iep.html
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>-%%DOCSDIR%%/programs/html/infoalign.html
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>-%%DOCSDIR%%/programs/html/lindna.html
>-%%DOCSDIR%%/programs/html/listor.html
>-%%DOCSDIR%%/programs/html/makenucseq.html
>-%%DOCSDIR%%/programs/html/makeprotseq.html
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>+%%DATADIR%%/index/edam.xisid
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>+%%DATADIR%%/index/go.xnm
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>+%%DATADIR%%/index/pw.ent
>+%%DATADIR%%/index/pw.pxac
>+%%DATADIR%%/index/pw.pxde
>+%%DATADIR%%/index/pw.pxid
>+%%DATADIR%%/index/pw.pxis
>+%%DATADIR%%/index/pw.pxnm
>+%%DATADIR%%/index/pw.xac
>+%%DATADIR%%/index/pw.xde
>+%%DATADIR%%/index/pw.xid
>+%%DATADIR%%/index/pw.xis
>+%%DATADIR%%/index/pw.xnm
>+%%DATADIR%%/index/ro.ent
>+%%DATADIR%%/index/ro.pxac
>+%%DATADIR%%/index/ro.pxde
>+%%DATADIR%%/index/ro.pxid
>+%%DATADIR%%/index/ro.pxis
>+%%DATADIR%%/index/ro.pxnm
>+%%DATADIR%%/index/ro.xac
>+%%DATADIR%%/index/ro.xde
>+%%DATADIR%%/index/ro.xid
>+%%DATADIR%%/index/ro.xis
>+%%DATADIR%%/index/ro.xnm
>+%%DATADIR%%/index/so.ent
>+%%DATADIR%%/index/so.pxac
>+%%DATADIR%%/index/so.pxde
>+%%DATADIR%%/index/so.pxid
>+%%DATADIR%%/index/so.pxis
>+%%DATADIR%%/index/so.pxnm
>+%%DATADIR%%/index/so.xac
>+%%DATADIR%%/index/so.xde
>+%%DATADIR%%/index/so.xid
>+%%DATADIR%%/index/so.xis
>+%%DATADIR%%/index/so.xnm
>+%%DATADIR%%/index/swo.ent
>+%%DATADIR%%/index/swo.pxac
>+%%DATADIR%%/index/swo.pxde
>+%%DATADIR%%/index/swo.pxid
>+%%DATADIR%%/index/swo.pxis
>+%%DATADIR%%/index/swo.pxnm
>+%%DATADIR%%/index/swo.pxns
>+%%DATADIR%%/index/swo.xac
>+%%DATADIR%%/index/swo.xde
>+%%DATADIR%%/index/swo.xid
>+%%DATADIR%%/index/swo.xis
>+%%DATADIR%%/index/swo.xnm
>+%%DATADIR%%/index/swo.xns
>+%%DATADIR%%/index/taxon.ent
>+%%DATADIR%%/index/taxon.pxac
>+%%DATADIR%%/index/taxon.pxgc
>+%%DATADIR%%/index/taxon.pxid
>+%%DATADIR%%/index/taxon.pxmgc
>+%%DATADIR%%/index/taxon.pxrnk
>+%%DATADIR%%/index/taxon.pxtax
>+%%DATADIR%%/index/taxon.pxup
>+%%DATADIR%%/index/taxon.xac
>+%%DATADIR%%/index/taxon.xgc
>+%%DATADIR%%/index/taxon.xid
>+%%DATADIR%%/index/taxon.xmgc
>+%%DATADIR%%/index/taxon.xrnk
>+%%DATADIR%%/index/taxon.xtax
>+%%DATADIR%%/index/taxon.xup
> %%DATADIR%%/jemboss/LICENSE
> %%DATADIR%%/jemboss/README
>-%%DATADIR%%/jemboss/api/allclasses-frame.html
>-%%DATADIR%%/jemboss/api/deprecated-list.html
>-%%DATADIR%%/jemboss/api/getClasses.pl
>-%%DATADIR%%/jemboss/api/help-doc.html
>-%%DATADIR%%/jemboss/api/index-all.html
>-%%DATADIR%%/jemboss/api/index.html
>-%%DATADIR%%/jemboss/api/makeDocs.csh
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/Jemboss.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/Jemboss.winExit.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/JembossLogo.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/JembossParams.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/BuildProgramMenu.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/ResultsMenuBar.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/SetUpMenuBar.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/ShowResultSet.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/ShowSavedResults.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/SwingWorker.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/DragTree.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.PopupListener.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/FileNode.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/FileSaving.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/BuildJembossForm.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/JembossComboPopup.html
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>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.WholeNumberDocument.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.html
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>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/startup/Splash.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/AcdFunResolve.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/AcdVarResolve.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/Ajax.html
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>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/ParseAcd.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationFields.html
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>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/programs/JembossProcess.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/programs/ListFile.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/programs/ResultList.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/programs/RunEmbossApplication.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/AuthPopup.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/CallAjax.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/GetWossname.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/JembossRun.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/JembossSoapException.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/PendingResults.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/PrivateRequest.html
>-%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/ResListView.html
>-%%DATADIR%%/jemboss/api/overview-tree.html
>-%%DATADIR%%/jemboss/api/package-list
>-%%DATADIR%%/jemboss/api/packages.html
>-%%DATADIR%%/jemboss/api/serialized-form.html
>-%%DATADIR%%/jemboss/api/stylesheet.css
> %%DATADIR%%/jemboss/images/Backward_arrow_button.gif
> %%DATADIR%%/jemboss/images/Forward_arrow_button.gif
> %%DATADIR%%/jemboss/images/Go_button.gif
>@@ -1625,6 +1427,7 @@
> %%DATADIR%%/jemboss/images/Job_manager_button.gif
> %%DATADIR%%/jemboss/images/Refresh_button.gif
> %%DATADIR%%/jemboss/images/Refresh_button2.gif
>+%%DATADIR%%/jemboss/images/jay64.jpg
> %%DATADIR%%/jemboss/lib/README
> %%DATADIR%%/jemboss/lib/activation.jar
> %%DATADIR%%/jemboss/lib/axis/axis-ant.jar
>@@ -1640,144 +1443,6 @@
> %%DATADIR%%/jemboss/lib/jalviewApplet.jar
> %%DATADIR%%/jemboss/lib/jemboss.jar
> %%DATADIR%%/jemboss/lib/mail.jar
>-%%DATADIR%%/jemboss/org/emboss/jemboss/Jemboss.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/JembossJarUtil.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/JembossLogo.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/JembossParams.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/draw/Block.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/draw/DNADraw.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/draw/EmbossCirdnaReader.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/draw/GeneticMarker.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/draw/LineAttribute.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/draw/PrintDNAImage.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/draw/RestrictionEnzyme.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/draw/Ticks.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/draw/Wizard.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/AlignApplet.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/AlignJFrame.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/ColourJFrame.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/ColourMenu.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/ColourPanel.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/Consensus.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/ConsensusOptions.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GraphicSequenceCollection.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutAlignJFrame.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutAlignJFrameEvent.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutAlignJFrameListener.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutGraphicSequenceCollection.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutGraphicSequenceCollectionEvent.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutGraphicSequenceCollectionListener.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutSequence.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutSequenceJPanel.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/IDTableJFrame.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/Matrix.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/MatrixJFrame.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/Paste.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PatternJFrame.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PlotConsensus.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PrettyPlotJFrame.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PrintAlignment.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PrintAlignmentImage.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PrintableJTable.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/Sequence.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceJPanel.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceNameJButton.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceProperties.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceReader.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceSaver.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/graphics/Graph2DPlot.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/graphics/PrintPlot.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/AdvancedOptions.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/Browser.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/BuildProgramMenu.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/Favorites.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ImageIconJPanel.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/KeywordSearch.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/LaunchJalView.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/MemoryComboBox.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ResultsMenuBar.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ScrollPanel.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SequenceData.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SequenceList.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SetUpMenuBar.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ShowResultSet.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ShowSavedResults.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SplashThread.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SwingWorker.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/DragTree.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/FileEditorDisplay.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/FileNode.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/FileSave.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/FileSaving.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/LocalAndRemoteFileTreeFrame.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/LocalTreeToolBar.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/RemoteDragTree.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileNode.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileTreePanel.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/AlignFormat.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/ApplicationNamePanel.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/BuildJembossForm.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/JembossComboPopup.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/LabelTextBox.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/ListFilePanel.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/MultiLineToolTipUI.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/MultiTextField.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/PlafMacros.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/ReportFormat.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/SectionPanel.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/Separator.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/SetInFileCard.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/SetOutFileCard.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/TextFieldFloat.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/TextFieldInt.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/TextFieldSink.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/FileChooser.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/startup/Database.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/gui/startup/ProgList.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/parser/AcdFunResolve.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/parser/AcdVarResolve.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/parser/AcdVariableResolve.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/parser/Ajax.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/parser/AjaxUtil.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/parser/Dependent.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/parser/ParseAcd.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/parser/acd/ApplicationFields.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/parser/acd/ApplicationParam.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/programs/BatchUpdateTimer.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/programs/JembossProcess.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/programs/ListFile.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/programs/ResultList.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/programs/ResultsUpdateTimer.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/programs/RunEmbossApplication.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/programs/RunEmbossApplication2.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/server/AppendToLogFileThread.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossAuthServer.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossFileAuthServer.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossFileServer.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossServer.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossThread.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/server/TestPrivateServer.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/server/TestPublicServer.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/AuthPopup.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/CallAjax.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/FileList.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/FileRoots.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/GetACD.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/GetHelp.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/GetWossname.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/JembossRun.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/JembossSoapException.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/MakeFileSafe.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/PendingResults.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/PrivateRequest.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/PublicRequest.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/ServerSetup.java
>-%%DATADIR%%/jemboss/org/emboss/jemboss/soap/ShowDB.java
> %%DATADIR%%/jemboss/readme.html
> %%DATADIR%%/jemboss/resources/filemgr.html
> %%DATADIR%%/jemboss/resources/jemboss.properties
>@@ -1788,7 +1453,6 @@
> %%DATADIR%%/jemboss/resources/results.html
> %%DATADIR%%/jemboss/resources/seqList.html
> %%DATADIR%%/jemboss/resources/version
>-%%DATADIR%%/jemboss/runJemboss.sh
> %%DATADIR%%/jemboss/utils/README
> %%DATADIR%%/jemboss/utils/install-jemboss-server.sh
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>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/taxgetdown.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/taxgetrank.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/taxgetspecies.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/taxgetup.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/textget.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/urlget.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/variationget.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossdata.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossinput.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossoperation.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossoutput.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossparam.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/wosstopic.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/xmlget.txt
>+%%PORTDOCS%%%%DOCSDIR%%/programs/text/xmltext.txt
> @dirrm bin
>+@dirrm include/ezlib
> @dirrm include/eplplot
>+@dirrm include/epcre
>+@dirrm include/eexpat
> @dirrm include
> @dirrm lib
> @dirrm %%DATADIR%%/acd
>@@ -1996,50 +2328,21 @@
> @dirrm %%DATADIR%%/data/JASPAR_CORE
> @dirrm %%DATADIR%%/data/JASPAR_FAM
> @dirrm %%DATADIR%%/data/JASPAR_PHYLOFACTS
>+@dirrm %%DATADIR%%/data/JASPAR_PBM
>+@dirrm %%DATADIR%%/data/JASPAR_PBM_HLH
>+@dirrm %%DATADIR%%/data/JASPAR_PBM_HOMEO
> @dirrm %%DATADIR%%/data/JASPAR_POLII
> @dirrm %%DATADIR%%/data/JASPAR_SPLICE
>+@dirrm %%DATADIR%%/data/OBO
> @dirrm %%DATADIR%%/data/PRINTS
> @dirrm %%DATADIR%%/data/PROSITE
> @dirrm %%DATADIR%%/data/REBASE
>+@dirrm %%DATADIR%%/data/TAXONOMY
> @dirrm %%DATADIR%%/data
>-@dirrm %%DOCSDIR%%/manuals
>-@dirrm %%DOCSDIR%%/programs/html
>-@dirrm %%DOCSDIR%%/programs/text
>-@dirrm %%DOCSDIR%%/programs
>-@dirrm %%DOCSDIR%%/tutorials
>-@dirrm %%DOCSDIR%%
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/startup
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/acd
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/parser
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/programs
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/soap
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss
>-@dirrm %%DATADIR%%/jemboss/api/org/emboss
>-@dirrm %%DATADIR%%/jemboss/api/org
>-@dirrm %%DATADIR%%/jemboss/api
>+@dirrm %%DATADIR%%/index
> @dirrm %%DATADIR%%/jemboss/images
> @dirrm %%DATADIR%%/jemboss/lib/axis
> @dirrm %%DATADIR%%/jemboss/lib
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/draw
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/editor
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/graphics
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/form
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/startup
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/parser/acd
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/parser
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/programs
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/server
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/soap
>-@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss
>-@dirrm %%DATADIR%%/jemboss/org/emboss
>-@dirrm %%DATADIR%%/jemboss/org
> @dirrm %%DATADIR%%/jemboss/resources
> @dirrm %%DATADIR%%/jemboss/utils
> @dirrm %%DATADIR%%/jemboss
>@@ -2051,5 +2354,11 @@
> @dirrm %%DATADIR%%/test/swnew
> @dirrm %%DATADIR%%/test/testdb
> @dirrm %%DATADIR%%/test
>-@dirrm %%DATADIR%%
>+@dirrmtry %%DATADIR%%
>+%%PORTDOCS%%@dirrm %%DOCSDIR%%/manuals
>+%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/html
>+%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/text
>+%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs
>+%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorials
>+%%PORTDOCS%%@dirrm %%DOCSDIR%%
> @dirrmtry share

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Attachments on bug 190508: 143291