Bug 273670 - biology/seqan3: Fails to build with GCC 13: The SDSL library is required, but wasn't found.
Summary: biology/seqan3: Fails to build with GCC 13: The SDSL library is required, but...
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Yuri Victorovich
URL:
Keywords:
Depends on:
Blocks: 273397
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Reported: 2023-09-10 06:53 UTC by Lorenzo Salvadore
Modified: 2023-09-10 18:11 UTC (History)
1 user (show)

See Also:
bugzilla: maintainer-feedback? (yuri)

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Description Lorenzo Salvadore freebsd_committer freebsd_triage 2023-09-10 06:53:11 UTC 
=======================<phase: configure      >============================
===>  Configuring for seqan3-3.2.0_2
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/seqan3/work/.build
-- The CXX compiler identification is GNU 13.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/bin/g++13 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- [1mFinding SeqAn3 and checking requirements:[m
--   SeqAn3 include dir found:   /wrkdirs/usr/ports/biology/seqan3/work/seqan3-3.2.0/include
--   Detected as running from a repository checkout…
--     …adding submodule include:  /wrkdirs/usr/ports/biology/seqan3/work/seqan3-3.2.0/submodules/sdsl-lite/include
--   C++ Standard-20 support:    via -std=c++20
--   C++ Concepts support:       via -std=c++20
--   Thread support:             via -pthread
CMake Error at build_system/seqan3-config.cmake:113 (message):
  The SDSL library is required, but wasn't found.  Get it from
  https://github.com/xxsds/sdsl-lite
Call Stack (most recent call first):
  build_system/seqan3-config.cmake:319 (seqan3_config_error)
  CMakeLists.txt:32 (find_package)


-- Configuring incomplete, errors occurred!
*** Error code 1

This page can be helpful:
https://gcc.gnu.org/gcc-13/porting_to.html
Comment 1 Lorenzo Salvadore freebsd_committer freebsd_triage 2023-09-10 06:53:57 UTC 
This bug report blocks the update of GCC_DEFAULT to 13.
Comment 2 Yuri Victorovich freebsd_committer freebsd_triage 2023-09-10 18:08:35 UTC 
This bug is fixed.

Thanks for reporting!
Comment 3 commit-hook freebsd_committer freebsd_triage 2023-09-10 18:11:44 UTC 
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=aa82e618e41f13be59c41cbe5d90a51f1229e320

commit aa82e618e41f13be59c41cbe5d90a51f1229e320
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2023-09-10 18:07:23 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2023-09-10 18:10:47 +0000

    biology/seqan3: update 3.2.0 → 3.3.0

    PR:             273670
    Reported by:     Lorenzo Salvadore <salvadore@freebsd.org>

 biology/seqan3/Makefile  |  6 +++---
 biology/seqan3/distinfo  | 10 +++++-----
 biology/seqan3/pkg-plist | 42 +++++++++++++++++++++++++++---------------
 3 files changed, 35 insertions(+), 23 deletions(-)