Bug 279307 - biology/py-orange3-bioinformatics: update 4.3.1 → 4.8.4
Summary: biology/py-orange3-bioinformatics: update 4.3.1 → 4.8.4
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Vladimir Druzenko
URL: https://github.com/biolab/orange3-bio...
Keywords:
Depends on:
Blocks:
 
Reported: 2024-05-25 23:00 UTC by Älven
Modified: 2025-02-18 20:22 UTC (History)
2 users (show)

See Also:
vvd: maintainer-feedback-


Attachments
[PATCH] biology/py-orange3-bioinformatics: update 4.3.1 → 4.8.2 (3.30 KB, patch)
2024-05-25 23:00 UTC, Älven
no flags Details | Diff
[PATCH] biology/py-orange3-bioinformatics: update 4.3.1 => 4.8.4 (3.24 KB, patch)
2025-02-18 11:59 UTC, Älven
alster: maintainer-approval? (yuri)
Details | Diff

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Description Älven 2024-05-25 23:00:40 UTC
Created attachment 250965 [details]
[PATCH] biology/py-orange3-bioinformatics: update 4.3.1 → 4.8.2
Comment 1 Vladimir Druzenko freebsd_committer freebsd_triage 2025-02-17 21:13:44 UTC
Maintainer timeout > 8 months.
Comment 2 Vladimir Druzenko freebsd_committer freebsd_triage 2025-02-17 21:44:05 UTC
Can't download 4.8.3 and 4.8.4 from MASTER_SITES=PYPI.
But I see it here: https://pypi.org/project/Orange3-Bioinformatics/#files
with strange path: https://files.pythonhosted.org/packages/98/1c/3566dd92e4ef3bc863a63601af351420560b971e0f9f2ca90b0b52b880e8/orange3_bioinformatics-4.8.4.tar.gz

I'll just add this path to MASTER_SITES.
Comment 3 Älven 2025-02-18 09:16:52 UTC
I've just fixed it with:
DISTNAME=       ${PORTNAME:S/-/_/}-${DISTVERSION}

Now testing the port and will submit in an hour.
Comment 4 Älven 2025-02-18 11:59:03 UTC
Created attachment 257615 [details]
[PATCH] biology/py-orange3-bioinformatics: update 4.3.1 => 4.8.4
Comment 5 commit-hook freebsd_committer freebsd_triage 2025-02-18 19:46:19 UTC
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=fc3ebf97945b35c0e07d81291ee7e9661adc3614

commit fc3ebf97945b35c0e07d81291ee7e9661adc3614
Author:     Älven <alster@vinterdalen.se>
AuthorDate: 2025-02-18 18:08:51 +0000
Commit:     Vladimir Druzenko <vvd@FreeBSD.org>
CommitDate: 2025-02-18 19:45:18 +0000

    biology/py-orange3-bioinformatics: Update 4.3.1 → 4.8.4

    Changelogs:
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.4.0
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.5.0
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.6.0
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.7.0
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.7.1
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.7.2
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.8.0
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.8.1
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.8.2
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.8.3
    https://github.com/biolab/orange3-bioinformatics/releases/tag/4.8.4

    Cosmetic changes in Makefile.

    PR:             279307
    Approved by:    yuri (maintainer, timeout > 8 months)

 biology/py-orange3-bioinformatics/Makefile | 9 ++++-----
 biology/py-orange3-bioinformatics/distinfo | 6 +++---
 2 files changed, 7 insertions(+), 8 deletions(-)
Comment 6 Vladimir Druzenko freebsd_committer freebsd_triage 2025-02-18 20:11:48 UTC
Thanks.
Comment 7 Älven 2025-02-18 20:22:43 UTC
Thank you too! :)

P.S. I've just noticed the issue with DISTNAME became rather common in python ports since PYPI made their download URLs case-sensitive.