Bug 283035 - biology/fasttree: update 2.1.10 → 2.1.11
Summary: biology/fasttree: update 2.1.10 → 2.1.11
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Jason W. Bacon
URL: https://microbesonline.org/fasttree/C...
Keywords:
Depends on:
Blocks:
 
Reported: 2024-11-29 06:30 UTC by Älven
Modified: 2024-12-03 15:02 UTC (History)
1 user (show)

See Also:
bugzilla: maintainer-feedback? (jwb)

Attachments
[PATCH] biology/fasttree: update 2.1.10 → 2.1.11 (2.46 KB, patch)
2024-11-29 06:30 UTC, Älven 		alster: maintainer-approval? (jwb)
 Details | Diff
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Description Älven 2024-11-29 06:30:03 UTC 
Created attachment 255520 [details]
[PATCH] biology/fasttree: update 2.1.10 → 2.1.11

Version 2.1.11: May 17, 2019

	Added the -trans option to read a transition matrix (and
	stationary distribution) from a file. This is for amino acid
	alignments only.
Comment 1 commit-hook freebsd_committer freebsd_triage 2024-12-03 14:55:17 UTC 
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=12b5c3c8f16f39c561373f70a554b98ae9f0dec7

commit 12b5c3c8f16f39c561373f70a554b98ae9f0dec7
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2024-12-03 14:52:16 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2024-12-03 14:55:06 +0000

    biology/fasttree: Update to 2.1.11

    Add -trans option for amino acid alignments
    Changes: https://microbesonline.org/fasttree/ChangeLog

    PR:             283035
    Reported by:    alster@vinterdalen.se

 biology/fasttree/Makefile                      | 14 +++++++-------
 biology/fasttree/distinfo                      |  6 +++---
 biology/fasttree/files/patch-FastTree-2.1.10.c |  4 ++--
 3 files changed, 12 insertions(+), 12 deletions(-)
Comment 2 Jason W. Bacon freebsd_committer freebsd_triage 2024-12-03 15:02:47 UTC 
Committed with additional changes to silence "portlint -A".

Thanks!