Created attachment 255783 [details] [PATCH] biology/subread: update 2.0.2 → 2.0.8 Release 2.0.8, 4 November 2024 Fixed a bug in featureCounts that cannot load annotations of very long chromosomes. Release 2.0.7, 17 October 2024 Deprecated the '--maxMOp' parameter. Updated User's Guide. Release 2.0.6, 10 May 2023 Fixed a bug in featureCounts when counting reads supporting each exon-exon junction in long-read data. Release 2.0.5, 17 April 2023 Update the inbuilt gene annotation for mm39. Release 2.0.4, 27 February 2023 '--fraction' parameter now works with '--largestOverlap' parameter in featureCounts. Value provided to '--fracOverlap' parameter in featureCounts is now precisely applied for read filtering. '-J' parameter in featureCounts now considers all the reads in the input for junction counting. Release 2.0.3, 15 July 2021 Users guide updated
A commit in branch main references this bug: URL: https://cgit.FreeBSD.org/ports/commit/?id=cad392241a596be06c9caeb29a8f66c194180b95 commit cad392241a596be06c9caeb29a8f66c194180b95 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2025-01-19 12:46:51 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2025-01-19 12:46:51 +0000 biology/subread: Update to 2.0.8 A few fixes and updates since 2.0.2 Changes: https://subread.sourceforge.net/ PR: 283261 Reported by: alster@vinterdalen.se biology/subread/Makefile | 10 ++++++---- biology/subread/distinfo | 6 +++--- biology/subread/files/patch-longread-one_Makefile | 16 +++++++++------- 3 files changed, 18 insertions(+), 14 deletions(-)
Thanks!