Attachment #105674 for bug #146180

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#

PORTNAME=	jags
DISTVERSION=	2.0.0-20100429
PORTREVISION=	1
CATEGORIES=	math
MASTER_SITES=	SF:1,2,3
MASTER_SITE_SUBDIR=	mcmc-jags/JAGS/2.0/Source/:1 \
		mcmc-jags/Examples/2.0/:2 \
		mcmc-jags/Manuals/2.0/:3
DISTFILES=	${DISTNAME:U}${EXTRACT_SUFX}:1
.if !defined(NOPORTDOCS)
DISTFILES+=	classic-bugs.tar.gz:2 jags_developer_manual.pdf:3 \
		jags_installation_manual.pdf:3 jags_user_manual.pdf:3
EXTRACT_ONLY=	${DISTNAME:U}${EXTRACT_SUFX}
.endif

MAINTAINER=	bf1783@gmail.com
COMMENT=	Just Another Gibbs Sampler

LIB_DEPENDS=	Rmath.0:${PORTSDIR}/math/libRmath

.if defined(WITH_ATLAS)
LIB_DEPENDS+=	atlas.2:${PORTSDIR}/math/atlas
CONFIGURE_ARGS=	--with-lapack=-lalapack --with-blas=-lf77blas

.endif

DIST_SUBDIR=	${PORTNAME}
WRKSRC= ${WRKDIR}/${PKGNAME:U:R}

GNU_CONFIGURE=	yes
LDFLAGS+=	-L${LOCALBASE}/lib
CONFIGURE_ENV=	LDFLAGS="${LDFLAGS}"
USE_FORTRAN=	yes
USE_LDCONFIG=	yes


post-install:
.if !defined(NOPORTDOCS)
	${MKDIR} ${DOCSDIR}
.for _M in developer installation user
	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/jags_${_M}_manual.pdf \
		${DOCSDIR}
.endfor
.endif
.if !defined(NOPORTEXAMPLES)
	${MKDIR} ${EXAMPLESDIR}




MD5 (jags/JAGS-2.0.0-20100429.tar.gz) = 492971b4983a64ed19426ef2a199a3a3
SHA256 (jags/JAGS-2.0.0-20100429.tar.gz) = 5eb80ae180cb1a9f130e70b43948398560e827addb159a76c146ccf9d7ede9e6
SIZE (jags/JAGS-2.0.0-20100429.tar.gz) = 1169463
MD5 (jags/classic-bugs.tar.gz) = 7df4366dfb5278cbd4ce43f21b4d9e6c
SHA256 (jags/classic-bugs.tar.gz) = 3814414bb5d23b1757f85cea549561389cf6d514cecad9a9ef945e21f806c3af
SIZE (jags/classic-bugs.tar.gz) = 81193
MD5 (jags/jags_developer_manual.pdf) = 850864bef54ff17858f8bf341b0c13c1
SHA256 (jags/jags_developer_manual.pdf) = 09d06b202adcbc9a52bd889c19c741ffb13f68b6657b9a0a999ad3f89259eb19
SIZE (jags/jags_developer_manual.pdf) = 71199
MD5 (jags/jags_installation_manual.pdf) = ad203ece5acdabcade940d0475ea17d8
SHA256 (jags/jags_installation_manual.pdf) = 86f5c9acd1efc8b5088114f93ba64d43af5d77436553594e5d331556b544a7cd
SIZE (jags/jags_installation_manual.pdf) = 119269
MD5 (jags/jags_user_manual.pdf) = efe47f0332544809627f57c209ca2068
SHA256 (jags/jags_user_manual.pdf) = 39f642e407a03c2e335adef5fca6af09ae5f9af312274dbb535b652c183b1aff
SIZE (jags/jags_user_manual.pdf) = 221001

Line 0 Link Here

(-)jags/files/patch-src_terminal_parser.yy (+10 lines)
	1	--- src/terminal/parser.yy.orig 2010-04-30 03:22:53.000000000 -0400
	2	+++ src/terminal/parser.yy 2010-04-30 03:23:09.000000000 -0400
	3	@@ -6,6 +6,7 @@
	4	//#include <limits.h>
	5	//#include <unistd.h>
	6
	7	+#include <climits>
	8	#include <cstdlib>
	9	#include <cstdio>
	10	#include <iostream>

Lines 9-52 Link Here

(-)jags/pkg-plist (-27 / +52 lines)
9	include/JAGS/compiler/LogicalFactory.h	9	include/JAGS/compiler/LogicalFactory.h
10	include/JAGS/compiler/MixtureFactory.h	10	include/JAGS/compiler/MixtureFactory.h
11	include/JAGS/compiler/NodeFactory.h	11	include/JAGS/compiler/NodeFactory.h
		12	include/JAGS/compiler/ObsFuncTab.h
12	include/JAGS/compiler/ParseTree.h	13	include/JAGS/compiler/ParseTree.h
13	include/JAGS/distribution/DistScalar.h	14	include/JAGS/distribution/ArrayDist.h
14	include/JAGS/distribution/DistScalarRmath.h	15	include/JAGS/distribution/DistPtr.h
15	include/JAGS/distribution/DistTab.h	16	include/JAGS/distribution/DistTab.h
16	include/JAGS/distribution/Distribution.h	17	include/JAGS/distribution/Distribution.h
17	include/JAGS/distribution/RNG.h	18	include/JAGS/distribution/RNG.h
18	include/JAGS/distribution/RNGFactory.h	19	include/JAGS/distribution/RNGFactory.h
19	include/JAGS/distribution/RmathRNG.h	20	include/JAGS/distribution/RmathRNG.h
		21	include/JAGS/distribution/ScalarDist.h
		22	include/JAGS/distribution/TruncatedNormal.h
		23	include/JAGS/distribution/VectorDist.h
		24	include/JAGS/function/ArrayFunction.h
20	include/JAGS/function/FuncTab.h	25	include/JAGS/function/FuncTab.h
21	include/JAGS/function/Function.h	26	include/JAGS/function/Function.h
22	include/JAGS/function/InverseLinkFunc.h	27	include/JAGS/function/FunctionPtr.h
23	include/JAGS/function/ScalarFunc.h	28	include/JAGS/function/LinkFunction.h
		29	include/JAGS/function/ScalarFunction.h
		30	include/JAGS/function/VectorFunction.h
24	include/JAGS/graph/AggNode.h	31	include/JAGS/graph/AggNode.h
		32	include/JAGS/graph/ArrayLogicalNode.h
		33	include/JAGS/graph/ArrayStochasticNode.h
25	include/JAGS/graph/ConstantNode.h	34	include/JAGS/graph/ConstantNode.h
26	include/JAGS/graph/DeterministicNode.h	35	include/JAGS/graph/DeterministicNode.h
27	include/JAGS/graph/DevianceNode.h
28	include/JAGS/graph/Graph.h	36	include/JAGS/graph/Graph.h
29	include/JAGS/graph/GraphMarks.h	37	include/JAGS/graph/GraphMarks.h
		38	include/JAGS/graph/LinkNode.h
30	include/JAGS/graph/LogicalNode.h	39	include/JAGS/graph/LogicalNode.h
31	include/JAGS/graph/MixtureNode.h	40	include/JAGS/graph/MixtureNode.h
32	include/JAGS/graph/Node.h	41	include/JAGS/graph/Node.h
33	include/JAGS/graph/NodeError.h	42	include/JAGS/graph/NodeError.h
		43	include/JAGS/graph/ScalarLogicalNode.h
		44	include/JAGS/graph/ScalarStochasticNode.h
34	include/JAGS/graph/StochasticNode.h	45	include/JAGS/graph/StochasticNode.h
		46	include/JAGS/graph/VSLogicalNode.h
		47	include/JAGS/graph/VectorLogicalNode.h
		48	include/JAGS/graph/VectorStochasticNode.h
35	include/JAGS/model/BUGSModel.h	49	include/JAGS/model/BUGSModel.h
36	include/JAGS/model/Model.h	50	include/JAGS/model/Model.h
37	include/JAGS/model/Monitor.h	51	include/JAGS/model/Monitor.h
		52	include/JAGS/model/MonitorControl.h
38	include/JAGS/model/MonitorFactory.h	53	include/JAGS/model/MonitorFactory.h
		54	include/JAGS/model/MonitorInfo.h
39	include/JAGS/model/NodeArray.h	55	include/JAGS/model/NodeArray.h
40	include/JAGS/model/SymTab.h	56	include/JAGS/model/SymTab.h
41	include/JAGS/sampler/DensityMethod.h	57	include/JAGS/sampler/GraphView.h
42	include/JAGS/sampler/DensitySampler.h
43	include/JAGS/sampler/Linear.h	58	include/JAGS/sampler/Linear.h
44	include/JAGS/sampler/Metropolis.h	59	include/JAGS/sampler/Metropolis.h
		60	include/JAGS/sampler/ParallelSampler.h
45	include/JAGS/sampler/RWMetropolis.h	61	include/JAGS/sampler/RWMetropolis.h
		62	include/JAGS/sampler/SampleMethod.h
46	include/JAGS/sampler/Sampler.h	63	include/JAGS/sampler/Sampler.h
47	include/JAGS/sampler/SamplerFactory.h	64	include/JAGS/sampler/SamplerFactory.h
48	include/JAGS/sampler/SingletonFactory.h	65	include/JAGS/sampler/SingletonFactory.h
49	include/JAGS/sampler/Slicer.h	66	include/JAGS/sampler/Slicer.h
		67	include/JAGS/sampler/StepAdapter.h
		68	include/JAGS/sampler/TemperedMetropolis.h
50	include/JAGS/sarray/Range.h	69	include/JAGS/sarray/Range.h
51	include/JAGS/sarray/RangeIterator.h	70	include/JAGS/sarray/RangeIterator.h
52	include/JAGS/sarray/SArray.h	71	include/JAGS/sarray/SArray.h
Lines 54-77 Link Here
54	include/JAGS/util/integer.h	73	include/JAGS/util/integer.h
55	include/JAGS/util/logical.h	74	include/JAGS/util/logical.h
56	include/JAGS/util/nainf.h	75	include/JAGS/util/nainf.h
57	lib/JAGS/modules/basemod.la	76	include/JAGS/version.h
58	lib/JAGS/modules/basemod.so	77	lib/JAGS/modules-2.0.0/basemod.la
59	lib/JAGS/modules/bugs.la	78	lib/JAGS/modules-2.0.0/basemod.so
60	lib/JAGS/modules/bugs.so	79	lib/JAGS/modules-2.0.0/bugs.la
61	lib/JAGS/modules/dic.la	80	lib/JAGS/modules-2.0.0/bugs.so
62	lib/JAGS/modules/dic.so	81	lib/JAGS/modules-2.0.0/dic.la
63	lib/JAGS/modules/mix.la	82	lib/JAGS/modules-2.0.0/dic.so
64	lib/JAGS/modules/mix.so	83	lib/JAGS/modules-2.0.0/glm.la
65	lib/JAGS/modules/msm.la	84	lib/JAGS/modules-2.0.0/glm.so
66	lib/JAGS/modules/msm.so	85	lib/JAGS/modules-2.0.0/lecuyer.la
		86	lib/JAGS/modules-2.0.0/lecuyer.so
		87	lib/JAGS/modules-2.0.0/mix.la
		88	lib/JAGS/modules-2.0.0/mix.so
		89	lib/JAGS/modules-2.0.0/msm.la
		90	lib/JAGS/modules-2.0.0/msm.so
67	lib/libjags.la	91	lib/libjags.la
68	lib/libjags.so	92	lib/libjags.so
69	lib/libjags.so.1	93	lib/libjags.so.2
70	lib/libjrmath.la	94	lib/libjrmath.la
71	lib/libjrmath.so	95	lib/libjrmath.so
72	lib/libjrmath.so.0	96	lib/libjrmath.so.0
73	libdata/pkgconfig/jags.pc	97	libdata/pkgconfig/jags.pc
74	libexec/jags-terminal	98	libexec/jags-terminal
		99	%%PORTDOCS%%%%DOCSDIR%%/jags_developer_manual.pdf
		100	%%PORTDOCS%%%%DOCSDIR%%/jags_installation_manual.pdf
75	%%PORTDOCS%%%%DOCSDIR%%/jags_user_manual.pdf	101	%%PORTDOCS%%%%DOCSDIR%%/jags_user_manual.pdf
76	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/Rcheck.R	102	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/Rcheck.R
77	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/bench.R	103	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/bench.R
Lines 105-122 Link Here
105	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/dyes.bug	131	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/dyes.bug
106	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/test1.R	132	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/test1.R
107	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/test1.cmd	133	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/test1.cmd
108	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/BT-data.R
109	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/ReadMe
110	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/bench-test1.R	134	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/bench-test1.R
111	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/bench-test2.R	135	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/bench-test2.R
112	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/bench.R
113	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil-data.R	136	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil-data.R
114	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil-inits.R	137	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil-inits.R
115	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil2.bug	138	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil2.bug
116	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil3.bug	139	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil3.bug
117	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/make-BT.R	140	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/test1.R
118	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/notest1.cmd	141	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/test1.cmd
119	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/notest2.cmd	142	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/test2.R
		143	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/test2.cmd
120	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/ReadMe	144	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/ReadMe
121	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/bench-test1.R	145	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/bench-test1.R
122	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/bench-test2.R	146	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/equiv/bench-test2.R
Lines 134-140 Link Here
134	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/inhaler/test1.R	158	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/inhaler/test1.R
135	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/ReadMe	159	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/ReadMe
136	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/bench-test1.R	160	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/bench-test1.R
137	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/bench.R
138	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/kidney-data.R	161	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/kidney-data.R
139	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/kidney-init.R	162	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/kidney-init.R
140	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/kidney.bug	163	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/kidney/kidney.bug
Lines 216-226 Link Here
216	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/salm/test1.cmd	239	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/salm/test1.cmd
217	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/salm/test2.R	240	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/salm/test2.R
218	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/salm/test2.cmd	241	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/salm/test2.cmd
		242	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/bench-test1.R
219	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/bench-test2.R	243	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/bench-test2.R
220	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/bench-test3.R	244	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/bench-test3.R
221	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/bench-test4.R	245	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/bench-test4.R
222	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/bench-test5.R	246	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/bench-test5.R
223	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/notest1.cmd
224	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seeds-data.R	247	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seeds-data.R
225	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seeds-init.R	248	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seeds-init.R
226	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seeds.bug	249	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seeds.bug
Lines 228-233 Link Here
228	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seedssig.bug	251	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seedssig.bug
229	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seedsuni.bug	252	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seedsuni.bug
230	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seedszro.bug	253	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/seedszro.bug
		254	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/test1.R
		255	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/test1.cmd
231	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/test2.R	256	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/test2.R
232	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/test2.cmd	257	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/test2.cmd
233	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/test3.R	258	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/seeds/test3.R
Lines 431-437 Link Here
431	%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/R	456	%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/R
432	%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%	457	%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
433	%%PORTDOCS%%@dirrm %%DOCSDIR%%	458	%%PORTDOCS%%@dirrm %%DOCSDIR%%
434	@dirrm lib/JAGS/modules	459	@dirrm lib/JAGS/modules-2.0.0
435	@dirrm lib/JAGS	460	@dirrm lib/JAGS
436	@dirrm include/JAGS/util	461	@dirrm include/JAGS/util
437	@dirrm include/JAGS/sarray	462	@dirrm include/JAGS/sarray

Return to bug 146180

Lines 7-27 Link Here

(-)jags/Makefile (-10 / +15 lines)
7	#	7	#
8		8
9	PORTNAME= jags	9	PORTNAME= jags
10	PORTVERSION= 1.0.4	10	DISTVERSION= 2.0.0-20100429
11	PORTREVISION= 1
12	CATEGORIES= math	11	CATEGORIES= math
13	MASTER_SITES= http://www-fis.iarc.fr/~martyn/software/jags/	12	MASTER_SITES= SF:1,2,3
14	DISTNAME= ${PORTNAME:U}-${PORTVERSION}	13	MASTER_SITE_SUBDIR= mcmc-jags/JAGS/2.0/Source/:1 \
		14	mcmc-jags/Examples/2.0/:2 \
		15	mcmc-jags/Manuals/2.0/:3
		16	DISTFILES= ${DISTNAME:U}${EXTRACT_SUFX}:1
15	.if !defined(NOPORTDOCS)	17	.if !defined(NOPORTDOCS)
16	DISTFILES= ${DISTNAME}${EXTRACT_SUFX} classic-bugs.tar.gz jags_user_manual.pdf	18	DISTFILES+= classic-bugs.tar.gz:2 jags_developer_manual.pdf:3 \
17	EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}	19	jags_installation_manual.pdf:3 jags_user_manual.pdf:3
		20	EXTRACT_ONLY= ${DISTNAME:U}${EXTRACT_SUFX}
18	.endif	21	.endif
19		22
20	MAINTAINER= bf1783@gmail.com	23	MAINTAINER= bf1783@gmail.com
21	COMMENT= Just Another Gibbs Sampler	24	COMMENT= Just Another Gibbs Sampler
22		25
23	LIB_DEPENDS= Rmath.0:${PORTSDIR}/math/libRmath
24
25	.if defined(WITH_ATLAS)	26	.if defined(WITH_ATLAS)
26	LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas	27	LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
27	CONFIGURE_ARGS= --with-lapack=-lalapack --with-blas=-lf77blas	28	CONFIGURE_ARGS= --with-lapack=-lalapack --with-blas=-lf77blas
Lines 32-40 Link Here
32	.endif	33	.endif
33		34
34	DIST_SUBDIR= ${PORTNAME}	35	DIST_SUBDIR= ${PORTNAME}
		36	WRKSRC= ${WRKDIR}/${PKGNAME:U:R}
35		37
36	GNU_CONFIGURE= yes	38	GNU_CONFIGURE= yes
37	CONFIGURE_ENV= LDFLAGS=-L${LOCALBASE}/lib	39	LDFLAGS+= -L${LOCALBASE}/lib
		40	CONFIGURE_ENV= LDFLAGS="${LDFLAGS}"
38	USE_FORTRAN= yes	41	USE_FORTRAN= yes
39	USE_LDCONFIG= yes	42	USE_LDCONFIG= yes
40		43
Lines 45-52 Link Here
45	post-install:	48	post-install:
46	.if !defined(NOPORTDOCS)	49	.if !defined(NOPORTDOCS)
47	${MKDIR} ${DOCSDIR}	50	${MKDIR} ${DOCSDIR}
48	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/jags_user_manual.pdf \	51	.for _M in developer installation user
		52	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/jags_${_M}_manual.pdf \
49	${DOCSDIR}	53	${DOCSDIR}
		54	.endfor
50	.endif	55	.endif
51	.if !defined(NOPORTEXAMPLES)	56	.if !defined(NOPORTEXAMPLES)
52	${MKDIR} ${EXAMPLESDIR}	57	${MKDIR} ${EXAMPLESDIR}

Lines 1-9 Link Here

(-)jags/distinfo (-9 / +15 lines)
1	MD5 (jags/JAGS-1.0.4.tar.gz) = a44dc20d548c5fd1a80504eb29f5397d	1	MD5 (jags/JAGS-2.0.0-20100429.tar.gz) = 492971b4983a64ed19426ef2a199a3a3
2	SHA256 (jags/JAGS-1.0.4.tar.gz) = 14665d034a36120ad373bc85702cca443da8e540533509486bdef432db0b5cca	2	SHA256 (jags/JAGS-2.0.0-20100429.tar.gz) = 5eb80ae180cb1a9f130e70b43948398560e827addb159a76c146ccf9d7ede9e6
3	SIZE (jags/JAGS-1.0.4.tar.gz) = 1074964	3	SIZE (jags/JAGS-2.0.0-20100429.tar.gz) = 1169463
4	MD5 (jags/classic-bugs.tar.gz) = 34291e2f6d3921b1b1eb0ac1db3fbf90	4	MD5 (jags/classic-bugs.tar.gz) = 7df4366dfb5278cbd4ce43f21b4d9e6c
5	SHA256 (jags/classic-bugs.tar.gz) = e3766060e0fcda709bf9326db79b14a6312f569417b7d59015bd37f0ebc1fe2f	5	SHA256 (jags/classic-bugs.tar.gz) = 3814414bb5d23b1757f85cea549561389cf6d514cecad9a9ef945e21f806c3af
6	SIZE (jags/classic-bugs.tar.gz) = 81668	6	SIZE (jags/classic-bugs.tar.gz) = 81193
7	MD5 (jags/jags_user_manual.pdf) = 018dbd12091a325bb3db92bf96b75283	7	MD5 (jags/jags_developer_manual.pdf) = 850864bef54ff17858f8bf341b0c13c1
8	SHA256 (jags/jags_user_manual.pdf) = cc2ff991069258eae8c1f7c337b2f184678d923a508b040e3444104e87a0a72c	8	SHA256 (jags/jags_developer_manual.pdf) = 09d06b202adcbc9a52bd889c19c741ffb13f68b6657b9a0a999ad3f89259eb19
9	SIZE (jags/jags_user_manual.pdf) = 247588	9	SIZE (jags/jags_developer_manual.pdf) = 71199
		10	MD5 (jags/jags_installation_manual.pdf) = ad203ece5acdabcade940d0475ea17d8
		11	SHA256 (jags/jags_installation_manual.pdf) = 86f5c9acd1efc8b5088114f93ba64d43af5d77436553594e5d331556b544a7cd
		12	SIZE (jags/jags_installation_manual.pdf) = 119269
		13	MD5 (jags/jags_user_manual.pdf) = efe47f0332544809627f57c209ca2068
		14	SHA256 (jags/jags_user_manual.pdf) = 39f642e407a03c2e335adef5fca6af09ae5f9af312274dbb535b652c183b1aff
		15	SIZE (jags/jags_user_manual.pdf) = 221001