Attachment #117063 for bug #159129

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PORTNAME=	arpack
PORTVERSION=	96
PORTREVISION=	9
CATEGORIES=	math
MASTER_SITES=	http://www.caam.rice.edu/software/ARPACK/SRC/
DISTFILES=	${PORTNAME}${PORTVERSION}.tar.gz patch.tar.gz

DIST_SUBDIR=	arpack
EXTRACT_ONLY=	${PORTNAME}${PORTVERSION}.tar.gz

PATCH_SITES=	http://mathema.tician.de/news.tiker.net/files/
PATCHFILES=	arpack-arscnd-3.patch.gz
PATCH_DIST_STRIP=	-p1

MAINTAINER=	stephen@FreeBSD.org
COMMENT=	Argand Library: large eigenvalue subroutines (serial version)

OPTIONS=	MANGLE_LAPACK_NAMES "Mangle LAPACK names" Off

LDFLAGS+=	-L${LOCALBASE}/lib
USE_FORTRAN=	yes
FFLAGS+=	-ffixed-line-length-none
USE_LDCONFIG=	yes
WRKSRC =	${WRKDIR}/ARPACK



.include <bsd.port.pre.mk>

.if defined(WITH_MANGLE_LAPACK_NAMES)
PATCH_SITES=	http://mathema.tician.de/news.tiker.net/files/
PATCHFILES=	arpack-arscnd-3.patch.gz
PATCH_DIST_STRIP=	-p1
USE_PERL5_BUILD=	yes
.endif

.if exists(${LOCALBASE}/lib/libatlas_r.so)
WITH_BLAS?=	atlas
.else

post-extract:
	@${TAR} -C ${WRKDIR} -xzf ${_DISTDIR}/patch.tar.gz
	@${GZIP_CMD} ${WRKSRC}/DOCUMENTS/ex-*.doc

post-patch:
	@${REINPLACE_CMD} -E \
		-e '/^(home|AR|FC|LDFLAGS|MAKE|PLAT|RANLIB|SHELL)[[:space:]]+=/d' \
		-e '/^ARPACKLIB[[:space:]]+=/s/_\$$\(PLAT\)//' \
		-e '\|^BLASLIB[[:space:]]+=|s|=.*|= ${LDFLAGS} ${BLAS}|' \
		-e '/^DIRS[[:space:]]+=/s/\$$\(BLASdir\)//' \
		-e '\|^FFLAGS[[:space:]]+=|s|=.*|= ${FFLAGS} $${PICFLAG} -ffixed-line-length-none|' \
			${WRKSRC}/ARmake.inc
.if defined(WITH_MANGLE_LAPACK_NAMES)
	@${SETENV} FILESDIR=${FILESDIR} WRKSRC=${WRKSRC} WRKDIR=${WRKDIR} \
		${PERL} ${SCRIPTDIR}/mangle-lapack-names.pl
.else
	@${CP} ${FILESDIR}/arpack.h ${WRKDIR}/
.endif
.if defined(WITH_MANGLE_LAPACK_NAMES)
	@cd ${WRKSRC} && ${PATCH} < ${FILESDIR}/UTIL+arscnd.f-patch
.else
	@cd ${WRKSRC} && ${PATCH} < ${FILESDIR}/UTIL+second.f-patch
.endif
	@${CP} -R ${WRKSRC} ${WRKSRC}_SHARED

do-build:

		${LD} -Bshareable -o libarpack.so.1 -x -soname libarpack.so.1 --whole-archive libarpack.a

do-install:
	@${INSTALL_DATA} ${WRKDIR}/arpack.h ${PREFIX}/include
	@${INSTALL_DATA} ${WRKSRC}/libarpack.a ${PREFIX}/lib
	@${INSTALL_DATA} ${WRKSRC}_SHARED/libarpack.so.1 ${PREFIX}/lib
	@${LN} -sf libarpack.so.1 ${PREFIX}/lib/libarpack.so

	@cd ${WRKSRC}/EXAMPLES/SIMPLE ; ${SETENV} ${MAKE_ENV} \
		PICFLAG= home="${WRKSRC}" \
		${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} simple ; ${SIMPLETESTS:S|^|./|:S|$| ; |}
	cd ${WRKSRC}_SHARED/EXAMPLES/SIMPLE ; ${SETENV} ${MAKE_ENV} \
		PICFLAG=${PICFLAG}  home="${WRKSRC}_SHARED" \
		${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} simple ; ${SIMPLETESTS:S|^|./|:S|$| ; |}


Line 0 Link Here

(-)arpack/files/UTIL+arscnd.f-patch (+10 lines)
	1	--- UTIL/arscnd.f.bak 2011-07-20 19:47:43.000000000 -0400
	2	+++ UTIL/arscnd.f 2011-07-20 19:48:05.000000000 -0400
	3	@@ -21,7 +21,6 @@
	4	* ..
	5	* .. External Functions ..
	6	REAL ETIME
	7	- EXTERNAL ETIME
	8	* ..
	9	* .. Executable Statements ..
	10	*

Line 0 Link Here

(-)arpack/files/UTIL+second.f-patch (+10 lines)
	1	--- UTIL/second.f.bak 2011-07-20 19:47:43.000000000 -0400
	2	+++ UTIL/second.f 2011-07-20 19:48:05.000000000 -0400
	3	@@ -21,7 +21,6 @@
	4	* ..
	5	* .. External Functions ..
	6	REAL ETIME
	7	- EXTERNAL ETIME
	8	* ..
	9	* .. Executable Statements ..
	10	*

Lines 1-10 Link Here

(-)arpack/files/patch-UTIL+second.f (-10 lines)
1	--- UTIL/arscnd.f.bak 2011-07-20 19:47:43.000000000 -0400
2	+++ UTIL/arscnd.f 2011-07-20 19:48:05.000000000 -0400
3	@@ -21,7 +21,6 @@
4	* ..
5	* .. External Functions ..
6	REAL ETIME
7	- EXTERNAL ETIME
8	* ..
9	* .. Executable Statements ..
10	*




ARPACK software is designed to solve symmetric, nonsymmetric, and generalized
eigenproblems for sparse matrices.  The software is designed to compute a few
(k) eigenvalues with user specified features such as those of largest real
part or largest magnitude. Storage requirements are on the order of n*k
locations. A set of Schur basis vectors for the desired k-dimensional
eigen-space is computed which is numerically orthogonal to working precision.
Numerically accurate eigenvectors are available on request.
Implicitly Restarted Lanczos Method (IRLM). These variants may be viewed as a
synthesis of the Arnoldi/Lanczos process with the Implicitly Shifted QR
technique that is suitable for large scale problems. For many standard 
problems, a matrix factorization is not required. Only the action of the matrix
on a vector is needed.
ARPACK software is capable of solving large scale symmetric, nonsymmetric, 
and generalized eigenproblems from significant application areas. The software
is designed to compute a few (k) eigenvalues with user specified features 
such as those of largest real part or largest magnitude. Storage requirements
are on the order of n*k locations. No auxiliary storage is required. A set 
of Schur basis vectors for the desired k-dimensional eigen-space is computed
which is numerically orthogonal to working precision. Numerically accurate 
eigenvectors are available on request.

WWW:	http://www.caam.rice.edu/software/ARPACK/

NOTES
1. You MUST link with the BLAS library or a replacement like ATLAS.
2. ARPACK is designed to work with lapack version 2, and it provides its own
   lapack routines.  If you have to link with lapack version 3 or greater,
   it is recommended that you switch on the option MANGLE_LAPACK_NAMES.  This
   does two things.  First it uses a patch described at
   http://mathema.tician.de/node/373.  Secondly, it mangles all the names of
   the LAPACK routines provided in ARPACK by preceding each function or
   subroutine name by "AR_".




$WRKSRC = $ENV{"WRKSRC"} || die;
$WRKDIR = $ENV{"WRKDIR"} || die;
$FILESDIR = $ENV{"FILESDIR"} || die;
$|=1;

while (<$WRKSRC/LAPACK/*.f>) {
  open(FOR,$_);
  while (<FOR>) {
    push @functions, $1 if /FUNCTION\s+(\w+)/ || /SUBROUTINE\s+(\w+)/;
  }
  close FOR;
}

print "Mangling LAPACK names.  This may take some time.\n";
open(LIST,"find $WRKSRC -type f -name \"*.f\" |");
while ($filename = <LIST>) {
  print ".";
  chomp $filename;
  rename $filename, "$filename.bak";
  open(IN,"$filename.bak") || die;
  $contents = join "", <IN>;
  close IN;
  foreach (@functions) {
    $contents =~ s/\b$_\b/AR_$_/gi;
  }
  open(OUT,"> $filename") || die;
  print OUT $contents;
  close OUT;
}
close LIST;

print ".";
open(IN,"$FILESDIR/arpack.h") || die;
$contents = join '',<IN>;
close IN;
foreach (@functions) {
  $_ = lc($_);
  $contents =~ s/\b${_}_\b/ar_${_}_/g;
}
open(OUT,"> $WRKDIR/arpack.h") || die;
print OUT $contents;
close OUT;
print "\nDone mangling.\n";

Return to bug 159129

Lines 7-13 Link Here

(-)arpack/Makefile (-9 / +25 lines)
7		7
8	PORTNAME= arpack	8	PORTNAME= arpack
9	PORTVERSION= 96	9	PORTVERSION= 96
10	PORTREVISION= 8	10	PORTREVISION= 9
11	CATEGORIES= math	11	CATEGORIES= math
12	MASTER_SITES= http://www.caam.rice.edu/software/ARPACK/SRC/	12	MASTER_SITES= http://www.caam.rice.edu/software/ARPACK/SRC/
13	DISTFILES= ${PORTNAME}${PORTVERSION}.tar.gz patch.tar.gz	13	DISTFILES= ${PORTNAME}${PORTVERSION}.tar.gz patch.tar.gz
Lines 17-31 Link Here
17	DIST_SUBDIR= arpack	17	DIST_SUBDIR= arpack
18	EXTRACT_ONLY= ${PORTNAME}${PORTVERSION}.tar.gz	18	EXTRACT_ONLY= ${PORTNAME}${PORTVERSION}.tar.gz
19		19
20	PATCH_SITES= http://mathema.tician.de/news.tiker.net/files/
21	PATCHFILES= arpack-arscnd-3.patch.gz
22	PATCH_DIST_STRIP= -p1
23
24	MAINTAINER= stephen@FreeBSD.org	20	MAINTAINER= stephen@FreeBSD.org
25	COMMENT= Argand Library: large eigenvalue subroutines (serial version)	21	COMMENT= Argand Library: large eigenvalue subroutines (serial version)
26		22
		23	OPTIONS= MANGLE_LAPACK_NAMES "Mangle LAPACK names" Off
		24
27	LDFLAGS+= -L${LOCALBASE}/lib	25	LDFLAGS+= -L${LOCALBASE}/lib
28	USE_FORTRAN= yes	26	USE_FORTRAN= yes
		27	FFLAGS+= -ffixed-line-length-none
29	USE_LDCONFIG= yes	28	USE_LDCONFIG= yes
30	WRKSRC = ${WRKDIR}/ARPACK	29	WRKSRC = ${WRKDIR}/ARPACK
31		30
Lines 46-51 Link Here
46		45
47	.include <bsd.port.pre.mk>	46	.include <bsd.port.pre.mk>
48		47
		48	.if defined(WITH_MANGLE_LAPACK_NAMES)
		49	PATCH_SITES= http://mathema.tician.de/news.tiker.net/files/
		50	PATCHFILES= arpack-arscnd-3.patch.gz
		51	PATCH_DIST_STRIP= -p1
		52	USE_PERL5_BUILD= yes
		53	.endif
		54
49	.if exists(${LOCALBASE}/lib/libatlas_r.so)	55	.if exists(${LOCALBASE}/lib/libatlas_r.so)
50	WITH_BLAS?= atlas	56	WITH_BLAS?= atlas
51	.else	57	.else
Lines 69-83 Link Here
69	post-extract:	75	post-extract:
70	@${TAR} -C ${WRKDIR} -xzf ${_DISTDIR}/patch.tar.gz	76	@${TAR} -C ${WRKDIR} -xzf ${_DISTDIR}/patch.tar.gz
71	@${GZIP_CMD} ${WRKSRC}/DOCUMENTS/ex-*.doc	77	@${GZIP_CMD} ${WRKSRC}/DOCUMENTS/ex-*.doc
72
73	post-patch:	78	post-patch:
74	@${REINPLACE_CMD} -E \	79	@${REINPLACE_CMD} -E \
75	-e '/^(home\|AR\|FC\|LDFLAGS\|MAKE\|PLAT\|RANLIB\|SHELL)[[:space:]]+=/d' \	80	-e '/^(home\|AR\|FC\|LDFLAGS\|MAKE\|PLAT\|RANLIB\|SHELL)[[:space:]]+=/d' \
76	-e '/^ARPACKLIB[[:space:]]+=/s/_\$$\(PLAT\)//' \	81	-e '/^ARPACKLIB[[:space:]]+=/s/_\$$\(PLAT\)//' \
77	-e '\\|^BLASLIB[[:space:]]+=\|s\|=.*\|= ${LDFLAGS} ${BLAS}\|' \	82	-e '\\|^BLASLIB[[:space:]]+=\|s\|=.*\|= ${LDFLAGS} ${BLAS}\|' \
78	-e '/^DIRS[[:space:]]+=/s/\$$\(BLASdir\)//' \	83	-e '/^DIRS[[:space:]]+=/s/\$$\(BLASdir\)//' \
79	-e '\\|^FFLAGS[[:space:]]+=\|s\|=.*\|= ${FFLAGS} $${PICFLAG}\|' \	84	-e '\\|^FFLAGS[[:space:]]+=\|s\|=.*\|= ${FFLAGS} $${PICFLAG} -ffixed-line-length-none\|' \
80	${WRKSRC}/ARmake.inc	85	${WRKSRC}/ARmake.inc
		86	.if defined(WITH_MANGLE_LAPACK_NAMES)
		87	@${SETENV} FILESDIR=${FILESDIR} WRKSRC=${WRKSRC} WRKDIR=${WRKDIR} \
		88	${PERL} ${SCRIPTDIR}/mangle-lapack-names.pl
		89	.else
		90	@${CP} ${FILESDIR}/arpack.h ${WRKDIR}/
		91	.endif
		92	.if defined(WITH_MANGLE_LAPACK_NAMES)
		93	@cd ${WRKSRC} && ${PATCH} < ${FILESDIR}/UTIL+arscnd.f-patch
		94	.else
		95	@cd ${WRKSRC} && ${PATCH} < ${FILESDIR}/UTIL+second.f-patch
		96	.endif
81	@${CP} -R ${WRKSRC} ${WRKSRC}_SHARED	97	@${CP} -R ${WRKSRC} ${WRKSRC}_SHARED
82		98
83	do-build:	99	do-build:
Lines 90-96 Link Here
90	${LD} -Bshareable -o libarpack.so.1 -x -soname libarpack.so.1 --whole-archive libarpack.a	106	${LD} -Bshareable -o libarpack.so.1 -x -soname libarpack.so.1 --whole-archive libarpack.a
91		107
92	do-install:	108	do-install:
93	@${INSTALL_DATA} ${FILESDIR}/arpack.h ${PREFIX}/include	109	@${INSTALL_DATA} ${WRKDIR}/arpack.h ${PREFIX}/include
94	@${INSTALL_DATA} ${WRKSRC}/libarpack.a ${PREFIX}/lib	110	@${INSTALL_DATA} ${WRKSRC}/libarpack.a ${PREFIX}/lib
95	@${INSTALL_DATA} ${WRKSRC}_SHARED/libarpack.so.1 ${PREFIX}/lib	111	@${INSTALL_DATA} ${WRKSRC}_SHARED/libarpack.so.1 ${PREFIX}/lib
96	@${LN} -sf libarpack.so.1 ${PREFIX}/lib/libarpack.so	112	@${LN} -sf libarpack.so.1 ${PREFIX}/lib/libarpack.so
Lines 108-114 Link Here
108	@cd ${WRKSRC}/EXAMPLES/SIMPLE ; ${SETENV} ${MAKE_ENV} \	124	@cd ${WRKSRC}/EXAMPLES/SIMPLE ; ${SETENV} ${MAKE_ENV} \
109	PICFLAG= home="${WRKSRC}" \	125	PICFLAG= home="${WRKSRC}" \
110	${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} simple ; ${SIMPLETESTS:S\|^\|./\|:S\|$\| ; \|}	126	${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} simple ; ${SIMPLETESTS:S\|^\|./\|:S\|$\| ; \|}
111	@cd ${WRKSRC}_SHARED/EXAMPLES/SIMPLE ; ${SETENV} ${MAKE_ENV} \	127	cd ${WRKSRC}_SHARED/EXAMPLES/SIMPLE ; ${SETENV} ${MAKE_ENV} \
112	PICFLAG=${PICFLAG} home="${WRKSRC}_SHARED" \	128	PICFLAG=${PICFLAG} home="${WRKSRC}_SHARED" \
113	${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} simple ; ${SIMPLETESTS:S\|^\|./\|:S\|$\| ; \|}	129	${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} simple ; ${SIMPLETESTS:S\|^\|./\|:S\|$\| ; \|}
114		130

Lines 1-24 Link Here

(-)arpack/pkg-descr (-21 / +16 lines)
1	The package is designed to compute a few eigenvalues and corresponding	1	ARPACK software is designed to solve symmetric, nonsymmetric, and generalized
2	eigenvectors of a general n by n matrix A. It is most appropriate for large	2	eigenproblems for sparse matrices. The software is designed to compute a few
3	sparse or structured matrices A where structured means that a matrix-vector	3	(k) eigenvalues with user specified features such as those of largest real
4	product w <- Av requires order n rather than the usual order n2 floating point	4	part or largest magnitude. Storage requirements are on the order of n*k
5	operations. This software is based upon an algorithmic variant of the Arnoldi	5	locations. A set of Schur basis vectors for the desired k-dimensional
6	process called the Implicitly Restarted Arnoldi Method (IRAM). When the matrix	6	eigen-space is computed which is numerically orthogonal to working precision.
7	A is symmetric it reduces to a variant of the Lanczos process called the	7	Numerically accurate eigenvectors are available on request.
8	Implicitly Restarted Lanczos Method (IRLM). These variants may be viewed as a
9	synthesis of the Arnoldi/Lanczos process with the Implicitly Shifted QR
10	technique that is suitable for large scale problems. For many standard
11	problems, a matrix factorization is not required. Only the action of the matrix
12	on a vector is needed.
13	ARPACK software is capable of solving large scale symmetric, nonsymmetric,
14	and generalized eigenproblems from significant application areas. The software
15	is designed to compute a few (k) eigenvalues with user specified features
16	such as those of largest real part or largest magnitude. Storage requirements
17	are on the order of n*k locations. No auxiliary storage is required. A set
18	of Schur basis vectors for the desired k-dimensional eigen-space is computed
19	which is numerically orthogonal to working precision. Numerically accurate
20	eigenvectors are available on request.
21		8
22	WWW: http://www.caam.rice.edu/software/ARPACK/	9	WWW: http://www.caam.rice.edu/software/ARPACK/
23		10
24	NOTE: You MUST link with BLAS library or a replacement like ATLAS.	11	NOTES
		12	1. You MUST link with the BLAS library or a replacement like ATLAS.
		13	2. ARPACK is designed to work with lapack version 2, and it provides its own
		14	lapack routines. If you have to link with lapack version 3 or greater,
		15	it is recommended that you switch on the option MANGLE_LAPACK_NAMES. This
		16	does two things. First it uses a patch described at
		17	http://mathema.tician.de/node/373. Secondly, it mangles all the names of
		18	the LAPACK routines provided in ARPACK by preceding each function or
		19	subroutine name by "AR_".

Line 0 Link Here

(-)arpack/scripts/mangle-lapack-names.pl (+43 lines)
	1	$WRKSRC = $ENV{"WRKSRC"} \|\| die;
	2	$WRKDIR = $ENV{"WRKDIR"} \|\| die;
	3	$FILESDIR = $ENV{"FILESDIR"} \|\| die;
	4	$\|=1;
	5
	6	while (<$WRKSRC/LAPACK/*.f>) {
	7	open(FOR,$_);
	8	while (<FOR>) {
	9	push @functions, $1 if /FUNCTION\s+(\w+)/ \|\| /SUBROUTINE\s+(\w+)/;
	10	}
	11	close FOR;
	12	}
	13
	14	print "Mangling LAPACK names. This may take some time.\n";
	15	open(LIST,"find $WRKSRC -type f -name \"*.f\" \|");
	16	while ($filename = <LIST>) {
	17	print ".";
	18	chomp $filename;
	19	rename $filename, "$filename.bak";
	20	open(IN,"$filename.bak") \|\| die;
	21	$contents = join "", <IN>;
	22	close IN;
	23	foreach (@functions) {
	24	$contents =~ s/\b$_\b/AR_$_/gi;
	25	}
	26	open(OUT,"> $filename") \|\| die;
	27	print OUT $contents;
	28	close OUT;
	29	}
	30	close LIST;
	31
	32	print ".";
	33	open(IN,"$FILESDIR/arpack.h") \|\| die;
	34	$contents = join '',<IN>;
	35	close IN;
	36	foreach (@functions) {
	37	$_ = lc($_);
	38	$contents =~ s/\b${_}_\b/ar_${_}_/g;
	39	}
	40	open(OUT,"> $WRKDIR/arpack.h") \|\| die;
	41	print OUT $contents;
	42	close OUT;
	43	print "\nDone mangling.\n";