Attachment #13196 for bug #25228

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#

PORTNAME=	emboss
PORTVERSION=	1.10.0
PORTREVISION=	1
CATEGORIES=	biology
MASTER_SITES=	ftp://ftp.uk.embnet.org/pub/EMBOSS/ \
		ftp://ftp.no.embnet.org/pub/EMBOSS/ \


WRKSRC=		${WRKDIR}/${PORTNAME:U}-${PORTVERSION}
EMBASSY_WRKDIR=	${WRKSRC}/EMBASSY
EMNU_VERSION=	1.0.4
MSE_VERSION=	0.0.4
TOPO_VERSION=	0.1
PHYLIP_VERSION=	3.573c

	  ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
	  ${MAKE_ARGS} ${INSTALL_TARGET})
.endfor
	@ ${PERL} -pe 's#%%PREFIX%%#${PREFIX}#' \
	  ${WRKSRC}/emboss/acd/emboss.default > \
	  ${PREFIX}/etc/emboss.default.sample && \
	  ${CHOWN} ${SHAREOWN}:${SHAREGRP} \
	  ${PREFIX}/etc/emboss.default.sample
.if !defined(BATCH)
	@ ${PERL} -pe 's#%%PREFIX%%#${PREFIX}#' \

Lines 1-5 Link Here

(-)emboss/distinfo (-5 / +5 lines)
1	MD5 (emboss/EMBOSS-1.9.1.tar.gz) = 569ff1f9f2df08928b2dfb8ae1a331b9	1	MD5 (emboss/EMBOSS-1.10.0.tar.gz) = cfe21d6af3683ad99546a380ac18699b
2	MD5 (emboss/EMNU-1.0.3.tar.gz) = 829dedc516e72144563d3a1a77793678	2	MD5 (emboss/EMNU-1.0.4.tar.gz) = 6ebdf128e1b531911ff97d2b8d6a59d8
3	MD5 (emboss/MSE-0.0.4.tar.gz) = 83b989776fbd59e346a2f90e7dc7f266	3	MD5 (emboss/MSE-0.0.4.tar.gz) = ec94c169918038aa318e035cd7bd2d83
4	MD5 (emboss/PHYLIP-3.573c.tar.gz) = bb1d9da41c6bfdb47828a7a9e0e40b2f	4	MD5 (emboss/PHYLIP-3.573c.tar.gz) = e1ca6cb87756836f0e1b3b6b026e826b
5	MD5 (emboss/TOPO-0.1.tar.gz) = 039b26ed333a3ba6bed20d1caf707834	5	MD5 (emboss/TOPO-0.1.tar.gz) = d570fe3e41380d99646d99b5d1586da1




--- emboss/acd/emboss.default.orig	Sun Feb 18 16:57:08 2001
+++ emboss/acd/emboss.default	Tue Feb 20 10:45:57 2001
@@ -1,9 +1,31 @@
-SET emboss_tempdata /nfs/WWW/data/EMBOSS/test
+#####################################################
+### Configuration options for FreeBSD EMBOSS port ###

 
-# Logfile - set this to a file that any user can append to
-# and EMBOSS applications will automatically write log information
+# The directory where EMBOSS expects to find run-time
+# databases.  This is the compiled-in default - change
+# only if you know what you're doing!
+#
+#SET emboss_data %%PREFIX%%/share/EMBOSS/data
 
-#SET emboss_logfile /packages/emboss/emboss/log
+# This is an alias which is internal to this
+# configuration file and is set here merely as a
+# convenience.  It points to the location where you
+# have placed your local databases (this will differ
+# from site to site).
+#
+SET emboss_tempdata %%PREFIX%%/share/EMBOSS/databases
+
+# Logfile.  If this is uncommented and set to a file
+# that any user can append to, EMBOSS applications
+# will automatically log usage information.
+#
+#SET emboss_logfile /var/log/emboss.log
+
+
+###########################################

Lines 2-12 Link Here

(-)emboss/pkg-message (-3 / +2 lines)
2		2
3	The EMBOSS suite has been successfully installed.	3	The EMBOSS suite has been successfully installed.
4		4
5	In order to use the EMBOSS programs, you will need to set some environment	5	In order to see graphical output from some EMBOSS programs, you will need to
6	variables in your shell startup file.	6	set the following environment variable in your shell startup file:
7		7
8	- set PLPLOT_LIB to: "%%PREFIX%%/share/EMBOSS"	8	- set PLPLOT_LIB to: "%%PREFIX%%/share/EMBOSS"
9	- set EMBOSS_ACDROOT to: "%%PREFIX%%/share/EMBOSS/acd"
10		9
11	NB: A sample configuration file has been installed to %%PREFIX%%/etc as	10	NB: A sample configuration file has been installed to %%PREFIX%%/etc as
12	emboss.default.sample. This must be renamed to emboss.default and edited	11	emboss.default.sample. This must be renamed to emboss.default and edited




bin/descseq
bin/diffseq
bin/digest
bin/domainer
bin/dotmatcher
bin/dotpath
bin/dottup

bin/infoseq
bin/isochore
bin/lindna
bin/marscan
bin/maskfeat
bin/maskseq
bin/matcher

bin/newseq
bin/noreturn
bin/notseq
bin/nrscope
bin/nthseq
bin/octanol
bin/oddcomp

bin/restover
bin/restrict
bin/revseq
bin/scope
bin/seealso
bin/seqmatchall
bin/seqret

share/EMBOSS/acd/descseq.acd
share/EMBOSS/acd/diffseq.acd
share/EMBOSS/acd/digest.acd
share/EMBOSS/acd/domainer.acd
share/EMBOSS/acd/dotmatcher.acd
share/EMBOSS/acd/dotpath.acd
share/EMBOSS/acd/dottup.acd

share/EMBOSS/acd/infoseq.acd
share/EMBOSS/acd/isochore.acd
share/EMBOSS/acd/lindna.acd
share/EMBOSS/acd/marscan.acd
share/EMBOSS/acd/maskfeat.acd
share/EMBOSS/acd/maskseq.acd
share/EMBOSS/acd/matcher.acd

share/EMBOSS/acd/newseq.acd
share/EMBOSS/acd/noreturn.acd
share/EMBOSS/acd/notseq.acd
share/EMBOSS/acd/nrscope.acd
share/EMBOSS/acd/nthseq.acd
share/EMBOSS/acd/octanol.acd
share/EMBOSS/acd/oddcomp.acd

share/EMBOSS/acd/silent.acd
share/EMBOSS/acd/simplesw.acd
share/EMBOSS/acd/splitter.acd
share/EMBOSS/acd/stamps.acd
share/EMBOSS/acd/stretcher.acd
share/EMBOSS/acd/stssearch.acd
share/EMBOSS/acd/supermatcher.acd

share/doc/EMBOSS/programs/html/dnapenny.html
share/doc/EMBOSS/programs/html/dollop.html
share/doc/EMBOSS/programs/html/dolpenny.html
share/doc/EMBOSS/programs/html/domainer.html
share/doc/EMBOSS/programs/html/dotmatcher.html
share/doc/EMBOSS/programs/html/dotmatcher0.gif
share/doc/EMBOSS/programs/html/dotpath.html

share/doc/EMBOSS/programs/html/isochore0.gif
share/doc/EMBOSS/programs/html/kitsch.html
share/doc/EMBOSS/programs/html/lindna.html
share/doc/EMBOSS/programs/html/marscan.html
share/doc/EMBOSS/programs/html/maskfeat.html
share/doc/EMBOSS/programs/html/maskseq.html
share/doc/EMBOSS/programs/html/matcher.html

share/doc/EMBOSS/programs/html/newseq.html
share/doc/EMBOSS/programs/html/noreturn.html
share/doc/EMBOSS/programs/html/notseq.html
share/doc/EMBOSS/programs/html/nrscope.html
share/doc/EMBOSS/programs/html/nthseq.html
share/doc/EMBOSS/programs/html/octanol.html
share/doc/EMBOSS/programs/html/octanol0.gif

share/doc/EMBOSS/programs/html/protein_sequence_composition_group.html
share/doc/EMBOSS/programs/html/protein_sequence_features_group.html
share/doc/EMBOSS/programs/html/protein_sequence_properties_group.html
share/doc/EMBOSS/programs/html/protein_structure_group.html
share/doc/EMBOSS/programs/html/pscan.html
share/doc/EMBOSS/programs/html/re_group.html
share/doc/EMBOSS/programs/html/rebaseextract.html

share/doc/EMBOSS/programs/html/remap.html
share/doc/EMBOSS/programs/html/repeats_group.html
share/doc/EMBOSS/programs/html/restml.html
share/doc/EMBOSS/programs/html/restover.html
share/doc/EMBOSS/programs/html/restrict.html
share/doc/EMBOSS/programs/html/restriction_enzymes_group.html
share/doc/EMBOSS/programs/html/revseq.html
share/doc/EMBOSS/programs/html/scope.html
share/doc/EMBOSS/programs/html/secondary_structure_group.html
share/doc/EMBOSS/programs/html/seealso.html
share/doc/EMBOSS/programs/html/seqboot.html

share/doc/EMBOSS/programs/text/dnapenny.txt
share/doc/EMBOSS/programs/text/dollop.txt
share/doc/EMBOSS/programs/text/dolpenny.txt
share/doc/EMBOSS/programs/text/domainer.txt
share/doc/EMBOSS/programs/text/dotmatcher.txt
share/doc/EMBOSS/programs/text/dotpath.txt
share/doc/EMBOSS/programs/text/dottup.txt

share/doc/EMBOSS/programs/text/isochore.txt
share/doc/EMBOSS/programs/text/kitsch.txt
share/doc/EMBOSS/programs/text/lindna.txt
share/doc/EMBOSS/programs/text/marscan.txt
share/doc/EMBOSS/programs/text/maskfeat.txt
share/doc/EMBOSS/programs/text/maskseq.txt
share/doc/EMBOSS/programs/text/matcher.txt

share/doc/EMBOSS/programs/text/newseq.txt
share/doc/EMBOSS/programs/text/noreturn.txt
share/doc/EMBOSS/programs/text/notseq.txt
share/doc/EMBOSS/programs/text/nrscope.txt
share/doc/EMBOSS/programs/text/nthseq.txt
share/doc/EMBOSS/programs/text/octanol.txt
share/doc/EMBOSS/programs/text/oddcomp.txt

share/doc/EMBOSS/programs/text/redata.txt
share/doc/EMBOSS/programs/text/remap.txt
share/doc/EMBOSS/programs/text/restml.txt
share/doc/EMBOSS/programs/text/restover.txt
share/doc/EMBOSS/programs/text/restrict.txt
share/doc/EMBOSS/programs/text/revseq.txt
share/doc/EMBOSS/programs/text/scope.txt
share/doc/EMBOSS/programs/text/seealso.txt
share/doc/EMBOSS/programs/text/seqboot.txt
share/doc/EMBOSS/programs/text/seqmatchall.txt

Return to bug 25228

Lines 6-13 Link Here

(-)emboss/Makefile (-4 / +6 lines)
6	#	6	#
7		7
8	PORTNAME= emboss	8	PORTNAME= emboss
9	PORTVERSION= 1.9.1	9	PORTVERSION= 1.10.0
10	PORTREVISION= 1
11	CATEGORIES= biology	10	CATEGORIES= biology
12	MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \	11	MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \
13	ftp://ftp.no.embnet.org/pub/EMBOSS/ \	12	ftp://ftp.no.embnet.org/pub/EMBOSS/ \
Lines 39-45 Link Here
39		38
40	WRKSRC= ${WRKDIR}/${PORTNAME:U}-${PORTVERSION}	39	WRKSRC= ${WRKDIR}/${PORTNAME:U}-${PORTVERSION}
41	EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY	40	EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY
42	EMNU_VERSION= 1.0.3	41	EMNU_VERSION= 1.0.4
43	MSE_VERSION= 0.0.4	42	MSE_VERSION= 0.0.4
44	TOPO_VERSION= 0.1	43	TOPO_VERSION= 0.1
45	PHYLIP_VERSION= 3.573c	44	PHYLIP_VERSION= 3.573c
Lines 105-111 Link Here
105	${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \	104	${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
106	${MAKE_ARGS} ${INSTALL_TARGET})	105	${MAKE_ARGS} ${INSTALL_TARGET})
107	.endfor	106	.endfor
108	@ ${INSTALL_DATA} ${WRKSRC}/emboss/acd/emboss.default \	107	@ ${PERL} -pe 's#%%PREFIX%%#${PREFIX}#' \
		108	${WRKSRC}/emboss/acd/emboss.default > \
		109	${PREFIX}/etc/emboss.default.sample && \
		110	${CHOWN} ${SHAREOWN}:${SHAREGRP} \
109	${PREFIX}/etc/emboss.default.sample	111	${PREFIX}/etc/emboss.default.sample
110	.if !defined(BATCH)	112	.if !defined(BATCH)
111	@ ${PERL} -pe 's#%%PREFIX%%#${PREFIX}#' \	113	@ ${PERL} -pe 's#%%PREFIX%%#${PREFIX}#' \

Lines 1-6 Link Here

(-)emboss/files/patch-emboss-acd-emboss.default (-12 / +18 lines)
1	--- emboss/acd/emboss.default.orig Mon Jan 22 23:26:54 2001	1	--- emboss/acd/emboss.default.orig Sun Feb 18 16:57:08 2001
2	+++ emboss/acd/emboss.default Mon Jan 29 16:23:15 2001	2	+++ emboss/acd/emboss.default Tue Feb 20 10:45:57 2001
3	@@ -1,9 +1,26 @@	3	@@ -1,9 +1,31 @@
4	-SET emboss_tempdata /nfs/WWW/data/EMBOSS/test	4	-SET emboss_tempdata /nfs/WWW/data/EMBOSS/test
5	+#####################################################	5	+#####################################################
6	+### Configuration options for FreeBSD EMBOSS port ###	6	+### Configuration options for FreeBSD EMBOSS port ###
Lines 8-27 Link Here
8		8
9	-# Logfile - set this to a file that any user can append to	9	-# Logfile - set this to a file that any user can append to
10	-# and EMBOSS applications will automatically write log information	10	-# and EMBOSS applications will automatically write log information
11	+# This is the compiled-in default. Change only if	11	+# The directory where EMBOSS expects to find run-time
12	+# you know what you're doing!	12	+# databases. This is the compiled-in default - change
		13	+# only if you know what you're doing!
13	+#	14	+#
14	+#SET emboss_data /usr/local/share/EMBOSS/data	15	+#SET emboss_data %%PREFIX%%/share/EMBOSS/data
15		16
16	+# This is where your local databases reside	17	-#SET emboss_logfile /packages/emboss/emboss/log
17	+# (this will differ from site to site):	18	+# This is an alias which is internal to this
		19	+# configuration file and is set here merely as a
		20	+# convenience. It points to the location where you
		21	+# have placed your local databases (this will differ
		22	+# from site to site).
18	+#	23	+#
19	+SET emboss_tempdata /var/db/bio	24	+SET emboss_tempdata %%PREFIX%%/share/EMBOSS/databases
20	+	25	+
21	+# Logfile - set this to a file that any user can append to and EMBOSS	26	+# Logfile. If this is uncommented and set to a file
22	+# applications will automatically write log information	27	+# that any user can append to, EMBOSS applications
		28	+# will automatically log usage information.
23	+#	29	+#
24	#SET emboss_logfile /packages/emboss/emboss/log	30	+#SET emboss_logfile /var/log/emboss.log
25	+	31	+
26	+	32	+
27	+###########################################	33	+###########################################

Lines 83-88 Link Here

(-)emboss/pkg-plist (+20 lines)
83	bin/descseq	83	bin/descseq
84	bin/diffseq	84	bin/diffseq
85	bin/digest	85	bin/digest
		86	bin/domainer
86	bin/dotmatcher	87	bin/dotmatcher
87	bin/dotpath	88	bin/dotpath
88	bin/dottup	89	bin/dottup
Lines 109-114 Link Here
109	bin/infoseq	110	bin/infoseq
110	bin/isochore	111	bin/isochore
111	bin/lindna	112	bin/lindna
		113	bin/marscan
112	bin/maskfeat	114	bin/maskfeat
113	bin/maskseq	115	bin/maskseq
114	bin/matcher	116	bin/matcher
Lines 121-126 Link Here
121	bin/newseq	123	bin/newseq
122	bin/noreturn	124	bin/noreturn
123	bin/notseq	125	bin/notseq
		126	bin/nrscope
124	bin/nthseq	127	bin/nthseq
125	bin/octanol	128	bin/octanol
126	bin/oddcomp	129	bin/oddcomp
Lines 156-161 Link Here
156	bin/restover	159	bin/restover
157	bin/restrict	160	bin/restrict
158	bin/revseq	161	bin/revseq
		162	bin/scope
159	bin/seealso	163	bin/seealso
160	bin/seqmatchall	164	bin/seqmatchall
161	bin/seqret	165	bin/seqret
Lines 238-243 Link Here
238	share/EMBOSS/acd/descseq.acd	242	share/EMBOSS/acd/descseq.acd
239	share/EMBOSS/acd/diffseq.acd	243	share/EMBOSS/acd/diffseq.acd
240	share/EMBOSS/acd/digest.acd	244	share/EMBOSS/acd/digest.acd
		245	share/EMBOSS/acd/domainer.acd
241	share/EMBOSS/acd/dotmatcher.acd	246	share/EMBOSS/acd/dotmatcher.acd
242	share/EMBOSS/acd/dotpath.acd	247	share/EMBOSS/acd/dotpath.acd
243	share/EMBOSS/acd/dottup.acd	248	share/EMBOSS/acd/dottup.acd
Lines 267-272 Link Here
267	share/EMBOSS/acd/infoseq.acd	272	share/EMBOSS/acd/infoseq.acd
268	share/EMBOSS/acd/isochore.acd	273	share/EMBOSS/acd/isochore.acd
269	share/EMBOSS/acd/lindna.acd	274	share/EMBOSS/acd/lindna.acd
		275	share/EMBOSS/acd/marscan.acd
270	share/EMBOSS/acd/maskfeat.acd	276	share/EMBOSS/acd/maskfeat.acd
271	share/EMBOSS/acd/maskseq.acd	277	share/EMBOSS/acd/maskseq.acd
272	share/EMBOSS/acd/matcher.acd	278	share/EMBOSS/acd/matcher.acd
Lines 279-284 Link Here
279	share/EMBOSS/acd/newseq.acd	285	share/EMBOSS/acd/newseq.acd
280	share/EMBOSS/acd/noreturn.acd	286	share/EMBOSS/acd/noreturn.acd
281	share/EMBOSS/acd/notseq.acd	287	share/EMBOSS/acd/notseq.acd
		288	share/EMBOSS/acd/nrscope.acd
282	share/EMBOSS/acd/nthseq.acd	289	share/EMBOSS/acd/nthseq.acd
283	share/EMBOSS/acd/octanol.acd	290	share/EMBOSS/acd/octanol.acd
284	share/EMBOSS/acd/oddcomp.acd	291	share/EMBOSS/acd/oddcomp.acd
Lines 338-343 Link Here
338	share/EMBOSS/acd/silent.acd	345	share/EMBOSS/acd/silent.acd
339	share/EMBOSS/acd/simplesw.acd	346	share/EMBOSS/acd/simplesw.acd
340	share/EMBOSS/acd/splitter.acd	347	share/EMBOSS/acd/splitter.acd
		348	share/EMBOSS/acd/stamps.acd
341	share/EMBOSS/acd/stretcher.acd	349	share/EMBOSS/acd/stretcher.acd
342	share/EMBOSS/acd/stssearch.acd	350	share/EMBOSS/acd/stssearch.acd
343	share/EMBOSS/acd/supermatcher.acd	351	share/EMBOSS/acd/supermatcher.acd
Lines 789-794 Link Here
789	share/doc/EMBOSS/programs/html/dnapenny.html	797	share/doc/EMBOSS/programs/html/dnapenny.html
790	share/doc/EMBOSS/programs/html/dollop.html	798	share/doc/EMBOSS/programs/html/dollop.html
791	share/doc/EMBOSS/programs/html/dolpenny.html	799	share/doc/EMBOSS/programs/html/dolpenny.html
		800	share/doc/EMBOSS/programs/html/domainer.html
792	share/doc/EMBOSS/programs/html/dotmatcher.html	801	share/doc/EMBOSS/programs/html/dotmatcher.html
793	share/doc/EMBOSS/programs/html/dotmatcher0.gif	802	share/doc/EMBOSS/programs/html/dotmatcher0.gif
794	share/doc/EMBOSS/programs/html/dotpath.html	803	share/doc/EMBOSS/programs/html/dotpath.html
Lines 854-859 Link Here
854	share/doc/EMBOSS/programs/html/isochore0.gif	863	share/doc/EMBOSS/programs/html/isochore0.gif
855	share/doc/EMBOSS/programs/html/kitsch.html	864	share/doc/EMBOSS/programs/html/kitsch.html
856	share/doc/EMBOSS/programs/html/lindna.html	865	share/doc/EMBOSS/programs/html/lindna.html
		866	share/doc/EMBOSS/programs/html/marscan.html
857	share/doc/EMBOSS/programs/html/maskfeat.html	867	share/doc/EMBOSS/programs/html/maskfeat.html
858	share/doc/EMBOSS/programs/html/maskseq.html	868	share/doc/EMBOSS/programs/html/maskseq.html
859	share/doc/EMBOSS/programs/html/matcher.html	869	share/doc/EMBOSS/programs/html/matcher.html
Lines 873-878 Link Here
873	share/doc/EMBOSS/programs/html/newseq.html	883	share/doc/EMBOSS/programs/html/newseq.html
874	share/doc/EMBOSS/programs/html/noreturn.html	884	share/doc/EMBOSS/programs/html/noreturn.html
875	share/doc/EMBOSS/programs/html/notseq.html	885	share/doc/EMBOSS/programs/html/notseq.html
		886	share/doc/EMBOSS/programs/html/nrscope.html
876	share/doc/EMBOSS/programs/html/nthseq.html	887	share/doc/EMBOSS/programs/html/nthseq.html
877	share/doc/EMBOSS/programs/html/octanol.html	888	share/doc/EMBOSS/programs/html/octanol.html
878	share/doc/EMBOSS/programs/html/octanol0.gif	889	share/doc/EMBOSS/programs/html/octanol0.gif
Lines 919-924 Link Here
919	share/doc/EMBOSS/programs/html/protein_sequence_composition_group.html	930	share/doc/EMBOSS/programs/html/protein_sequence_composition_group.html
920	share/doc/EMBOSS/programs/html/protein_sequence_features_group.html	931	share/doc/EMBOSS/programs/html/protein_sequence_features_group.html
921	share/doc/EMBOSS/programs/html/protein_sequence_properties_group.html	932	share/doc/EMBOSS/programs/html/protein_sequence_properties_group.html
		933	share/doc/EMBOSS/programs/html/protein_structure_group.html
922	share/doc/EMBOSS/programs/html/pscan.html	934	share/doc/EMBOSS/programs/html/pscan.html
923	share/doc/EMBOSS/programs/html/re_group.html	935	share/doc/EMBOSS/programs/html/re_group.html
924	share/doc/EMBOSS/programs/html/rebaseextract.html	936	share/doc/EMBOSS/programs/html/rebaseextract.html
Lines 928-935 Link Here
928	share/doc/EMBOSS/programs/html/remap.html	940	share/doc/EMBOSS/programs/html/remap.html
929	share/doc/EMBOSS/programs/html/repeats_group.html	941	share/doc/EMBOSS/programs/html/repeats_group.html
930	share/doc/EMBOSS/programs/html/restml.html	942	share/doc/EMBOSS/programs/html/restml.html
		943	share/doc/EMBOSS/programs/html/restover.html
931	share/doc/EMBOSS/programs/html/restrict.html	944	share/doc/EMBOSS/programs/html/restrict.html
		945	share/doc/EMBOSS/programs/html/restriction_enzymes_group.html
932	share/doc/EMBOSS/programs/html/revseq.html	946	share/doc/EMBOSS/programs/html/revseq.html
		947	share/doc/EMBOSS/programs/html/scope.html
933	share/doc/EMBOSS/programs/html/secondary_structure_group.html	948	share/doc/EMBOSS/programs/html/secondary_structure_group.html
934	share/doc/EMBOSS/programs/html/seealso.html	949	share/doc/EMBOSS/programs/html/seealso.html
935	share/doc/EMBOSS/programs/html/seqboot.html	950	share/doc/EMBOSS/programs/html/seqboot.html
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1022	share/doc/EMBOSS/programs/text/dnapenny.txt	1037	share/doc/EMBOSS/programs/text/dnapenny.txt
1023	share/doc/EMBOSS/programs/text/dollop.txt	1038	share/doc/EMBOSS/programs/text/dollop.txt
1024	share/doc/EMBOSS/programs/text/dolpenny.txt	1039	share/doc/EMBOSS/programs/text/dolpenny.txt
		1040	share/doc/EMBOSS/programs/text/domainer.txt
1025	share/doc/EMBOSS/programs/text/dotmatcher.txt	1041	share/doc/EMBOSS/programs/text/dotmatcher.txt
1026	share/doc/EMBOSS/programs/text/dotpath.txt	1042	share/doc/EMBOSS/programs/text/dotpath.txt
1027	share/doc/EMBOSS/programs/text/dottup.txt	1043	share/doc/EMBOSS/programs/text/dottup.txt
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1077	share/doc/EMBOSS/programs/text/isochore.txt	1093	share/doc/EMBOSS/programs/text/isochore.txt
1078	share/doc/EMBOSS/programs/text/kitsch.txt	1094	share/doc/EMBOSS/programs/text/kitsch.txt
1079	share/doc/EMBOSS/programs/text/lindna.txt	1095	share/doc/EMBOSS/programs/text/lindna.txt
		1096	share/doc/EMBOSS/programs/text/marscan.txt
1080	share/doc/EMBOSS/programs/text/maskfeat.txt	1097	share/doc/EMBOSS/programs/text/maskfeat.txt
1081	share/doc/EMBOSS/programs/text/maskseq.txt	1098	share/doc/EMBOSS/programs/text/maskseq.txt
1082	share/doc/EMBOSS/programs/text/matcher.txt	1099	share/doc/EMBOSS/programs/text/matcher.txt
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1092	share/doc/EMBOSS/programs/text/newseq.txt	1109	share/doc/EMBOSS/programs/text/newseq.txt
1093	share/doc/EMBOSS/programs/text/noreturn.txt	1110	share/doc/EMBOSS/programs/text/noreturn.txt
1094	share/doc/EMBOSS/programs/text/notseq.txt	1111	share/doc/EMBOSS/programs/text/notseq.txt
		1112	share/doc/EMBOSS/programs/text/nrscope.txt
1095	share/doc/EMBOSS/programs/text/nthseq.txt	1113	share/doc/EMBOSS/programs/text/nthseq.txt
1096	share/doc/EMBOSS/programs/text/octanol.txt	1114	share/doc/EMBOSS/programs/text/octanol.txt
1097	share/doc/EMBOSS/programs/text/oddcomp.txt	1115	share/doc/EMBOSS/programs/text/oddcomp.txt
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1127	share/doc/EMBOSS/programs/text/redata.txt	1145	share/doc/EMBOSS/programs/text/redata.txt
1128	share/doc/EMBOSS/programs/text/remap.txt	1146	share/doc/EMBOSS/programs/text/remap.txt
1129	share/doc/EMBOSS/programs/text/restml.txt	1147	share/doc/EMBOSS/programs/text/restml.txt
		1148	share/doc/EMBOSS/programs/text/restover.txt
1130	share/doc/EMBOSS/programs/text/restrict.txt	1149	share/doc/EMBOSS/programs/text/restrict.txt
1131	share/doc/EMBOSS/programs/text/revseq.txt	1150	share/doc/EMBOSS/programs/text/revseq.txt
		1151	share/doc/EMBOSS/programs/text/scope.txt
1132	share/doc/EMBOSS/programs/text/seealso.txt	1152	share/doc/EMBOSS/programs/text/seealso.txt
1133	share/doc/EMBOSS/programs/text/seqboot.txt	1153	share/doc/EMBOSS/programs/text/seqboot.txt
1134	share/doc/EMBOSS/programs/text/seqmatchall.txt	1154	share/doc/EMBOSS/programs/text/seqmatchall.txt