Attachment #132900 for bug #177261

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# $FreeBSD: head/biology/tinker/Makefile 308054 2012-12-01 00:00:43Z sperber $

PORTNAME=	tinker
PORTVERSION=	6.2.01
CATEGORIES=	biology
MASTER_SITES=	http://dasher.wustl.edu/tinker/downloads/



RESTRICTED=	author requests no distribution except from his FTP site

OPTIONS_DEFINE=	OPTIMIZED_FFLAGS DOCS EXAMPLES
OPTIONS_DEFAULT=DATA
OPTIMIZED_FFLAGS_DESC=	compilation optimizations

WRKSRC=		${WRKDIR}/${PORTNAME}


SUB_FILES=	pkg-message

DOCS=		0README *.pdf *.txt
SAMPLES=	0README *.make *.dyn *.int *.frac *.key *.seq *.pdb *.xyz
BENCHES=	0README *.dyn0 *.log *.key *.run *.xyz results*

.include <bsd.port.pre.mk>


.endif # i386
.endif

.if empty(PORT_OPTIONS:MDATA)
NOPORTDATA=	yes
.endif

post-extract:
	@${CHMOD} -R u+w ${WRKSRC}

post-install:
	@${MKDIR} ${DATADIR}
	(cd ${INSTALL_WRKSRC} && ${INSTALL_DATA} tinker.txt ${DATADIR})
	@${MKDIR} ${DATADIR}/params
	${INSTALL_DATA} ${WRKSRC}/params/* ${DATADIR}/params
.if ${PORT_OPTIONS:MDATA}
	@${MKDIR} ${DATADIR}/bench
	(cd ${WRKSRC}/bench && ${INSTALL_DATA} \
		0README *.dyn0 *.log *.key *.run *.xyz results* \
		${DATADIR}/bench)
	@${MKDIR} ${DATADIR}/params
	(cd ${WRKSRC}/params && ${INSTALL_DATA} * ${DATADIR}/params)
	@${MKDIR} ${DATADIR}/test
	(cd ${WRKSRC}/test && ${INSTALL_DATA} * ${DATADIR}/test)
.endif
.if ${PORT_OPTIONS:MDOCS}
	@${MKDIR} ${DOCSDIR}
	(cd ${WRKSRC}/doc && ${INSTALL_DATA} 0README *.pdf *.txt ${DOCSDIR})
.endif
.if ${PORT_OPTIONS:MEXAMPLES}
	@${MKDIR} ${EXAMPLESDIR}
	(cd ${WRKSRC}/example && ${INSTALL_DATA} \
		0README *.make *.dyn *.int *.frac *.key *.seq *.pdb *.xyz \
		${EXAMPLESDIR})
.endif
	@${ECHO_CMD}
	@${CAT} ${PKGMESSAGE}

Lines 1-2 Link Here

(-)biology/tinker/distinfo (-2 / +2 lines)
1	SHA256 (tinker-6.1.01.tar.gz) = fa287c381fd866822b19396fa152406b8463421f0a27902867cdbbf6b67233e4	1	SHA256 (tinker-6.2.01.tar.gz) = a19fd7e1b5afa7b55245b50f3358c43ae88efd664185ca32506e5ee9d504c88d
2	SIZE (tinker-6.1.01.tar.gz) = 19478639	2	SIZE (tinker-6.2.01.tar.gz) = 19561083




--- make/Makefile.orig	2012-06-29 14:51:42.000000000 +0900
+++ make/Makefile	2012-11-10 00:12:19.000000000 +0900
@@ -9,8 +9,8 @@
 ##
 ##   1. make all              Build all the TINKER executables
 ##   2. make rename           Move the executables to BINDIR
-##   3. make remove_links     Create soft links in LINKDIR
-##   4. make create_links     Remove soft links from LINKDIR
+##   3. make remove_links     Remove soft links in LINKDIR
+##   4. make create_links     Create soft links from LINKDIR
 ##   6. make listing          Concatenate source to tinker.txt
 ##   5. make clean            Delete objects and executables
 ##
@@ -30,9 +30,9 @@
 ##  LINKDIR      Linked Copies of TINKER Executables
 ##

 
 ##
 ##  Machine:  Macintosh
@@ -595,6 +609,8 @@
            xyzpdb.x \
            xyzsybyl.x
 

 .f.o:
 	${F77} ${F77FLAGS} ${OPTFLAGS} $*.f 
 
@@ -604,8 +620,8 @@
 server.o:
 	${F77} ${F77FLAGS} ${OPTFLAGS} server.f
 

 
 all:	${EXEFILES}
 
@@ -616,66 +632,66 @@
 	cat *.i *.f *.c > tinker.txt
 
 rename:

-	mv  testgrad.x   $(BINDIR)/testgrad
-	mv  testhess.x   $(BINDIR)/testhess
-	mv  testpair.x   $(BINDIR)/testpair
-	mv  testpol.x    $(BINDIR)/testpol
-	mv  testrot.x    $(BINDIR)/testrot
-	mv  timer.x      $(BINDIR)/timer
-	mv  timerot.x    $(BINDIR)/timerot

+	${BSD_INSTALL_PROGRAM}  testgrad.x   $(BINDIR)/testgrad
+	${BSD_INSTALL_PROGRAM}  testhess.x   $(BINDIR)/testhess
+	${BSD_INSTALL_PROGRAM}  testpair.x   $(BINDIR)/testpair
+	${BSD_INSTALL_PROGRAM}  testpol.x    $(BINDIR)/testpol
+	${BSD_INSTALL_PROGRAM}  testrot.x    $(BINDIR)/testrot
+	${BSD_INSTALL_PROGRAM}  timer.x      $(BINDIR)/timer
+	${BSD_INSTALL_PROGRAM}  timerot.x    $(BINDIR)/timerot

Lines 3-6 Link Here

(-)biology/tinker/files/pkg-message.in (-1 / +1 lines)
3	to him if you find Tinker to be useful.	3	to him if you find Tinker to be useful.
4		4
5	See %%DOCSDIR%% for license forms.	5	See %%DOCSDIR%% for license forms.
6	**********************************************************"	6	**********************************************************

Lines 43-48 Link Here

(-)biology/tinker/pkg-plist (-132 / +143 lines)
43	bin/testgrad	43	bin/testgrad
44	bin/testhess	44	bin/testhess
45	bin/testpair	45	bin/testpair
		46	bin/testpol
46	bin/testrot	47	bin/testrot
47	bin/timer	48	bin/timer
48	bin/timerot	49	bin/timerot
Lines 256-261 Link Here
256	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.dyn	257	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.dyn
257	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.key	258	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.key
258	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.xyz	259	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.xyz
		260	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/iamoeba.key
		261	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/iamoeba.xyz
259	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.int	262	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.int
260	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.key	263	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.key
261	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.xyz	264	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.xyz
Lines 362-367 Link Here
362	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyrrole.xyz	365	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyrrole.xyz
363	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/retinoic.key	366	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/retinoic.key
364	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/retinoic.xyz	367	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/retinoic.xyz
		368	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ring.key
		369	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ring.xyz
365	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/skunk.key	370	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/skunk.key
366	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/skunk.xyz	371	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/skunk.xyz
367	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spc.key	372	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spc.key
Lines 437-487 Link Here
437	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.int	442	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.int
438	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.key	443	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.key
439	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.xyz	444	%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.xyz
440	%%PORTDATA%%%%DATADIR%%/bench/0README	445	%%DATADIR%%/bench/0README
441	%%PORTDATA%%%%DATADIR%%/bench/bench1.key	446	%%DATADIR%%/bench/bench1.key
442	%%PORTDATA%%%%DATADIR%%/bench/bench1.run	447	%%DATADIR%%/bench/bench1.run
443	%%PORTDATA%%%%DATADIR%%/bench/bench1.xyz	448	%%DATADIR%%/bench/bench1.xyz
444	%%PORTDATA%%%%DATADIR%%/bench/bench2.key	449	%%DATADIR%%/bench/bench2.key
445	%%PORTDATA%%%%DATADIR%%/bench/bench2.run	450	%%DATADIR%%/bench/bench2.run
446	%%PORTDATA%%%%DATADIR%%/bench/bench2.xyz	451	%%DATADIR%%/bench/bench2.xyz
447	%%PORTDATA%%%%DATADIR%%/bench/bench3.key	452	%%DATADIR%%/bench/bench3.key
448	%%PORTDATA%%%%DATADIR%%/bench/bench3.run	453	%%DATADIR%%/bench/bench3.run
449	%%PORTDATA%%%%DATADIR%%/bench/bench3.xyz	454	%%DATADIR%%/bench/bench3.xyz
450	%%PORTDATA%%%%DATADIR%%/bench/bench4.dyn0	455	%%DATADIR%%/bench/bench4.dyn0
451	%%PORTDATA%%%%DATADIR%%/bench/bench4.key	456	%%DATADIR%%/bench/bench4.key
452	%%PORTDATA%%%%DATADIR%%/bench/bench4.log	457	%%DATADIR%%/bench/bench4.log
453	%%PORTDATA%%%%DATADIR%%/bench/bench4.run	458	%%DATADIR%%/bench/bench4.run
454	%%PORTDATA%%%%DATADIR%%/bench/bench4.xyz	459	%%DATADIR%%/bench/bench4.xyz
455	%%PORTDATA%%%%DATADIR%%/bench/bench5.dyn0	460	%%DATADIR%%/bench/bench5.dyn0
456	%%PORTDATA%%%%DATADIR%%/bench/bench5.key	461	%%DATADIR%%/bench/bench5.key
457	%%PORTDATA%%%%DATADIR%%/bench/bench5.log	462	%%DATADIR%%/bench/bench5.log
458	%%PORTDATA%%%%DATADIR%%/bench/bench5.run	463	%%DATADIR%%/bench/bench5.run
459	%%PORTDATA%%%%DATADIR%%/bench/bench5.xyz	464	%%DATADIR%%/bench/bench5.xyz
460	%%PORTDATA%%%%DATADIR%%/bench/bench6.key	465	%%DATADIR%%/bench/bench6.key
461	%%PORTDATA%%%%DATADIR%%/bench/bench6.log	466	%%DATADIR%%/bench/bench6.log
462	%%PORTDATA%%%%DATADIR%%/bench/bench6.run	467	%%DATADIR%%/bench/bench6.run
463	%%PORTDATA%%%%DATADIR%%/bench/bench6.xyz	468	%%DATADIR%%/bench/bench6.xyz
464	%%PORTDATA%%%%DATADIR%%/bench/bench7.key	469	%%DATADIR%%/bench/bench7.key
465	%%PORTDATA%%%%DATADIR%%/bench/bench7.log	470	%%DATADIR%%/bench/bench7.log
466	%%PORTDATA%%%%DATADIR%%/bench/bench7.run	471	%%DATADIR%%/bench/bench7.run
467	%%PORTDATA%%%%DATADIR%%/bench/bench7.xyz	472	%%DATADIR%%/bench/bench7.xyz
468	%%PORTDATA%%%%DATADIR%%/bench/results-2.3	473	%%DATADIR%%/bench/results-2.3
469	%%PORTDATA%%%%DATADIR%%/bench/results-2.4	474	%%DATADIR%%/bench/results-2.4
470	%%PORTDATA%%%%DATADIR%%/bench/results-2.9	475	%%DATADIR%%/bench/results-2.9
471	%%PORTDATA%%%%DATADIR%%/bench/results-3.1	476	%%DATADIR%%/bench/results-3.1
472	%%PORTDATA%%%%DATADIR%%/bench/results-3.2	477	%%DATADIR%%/bench/results-3.2
473	%%PORTDATA%%%%DATADIR%%/bench/results-3.4	478	%%DATADIR%%/bench/results-3.4
474	%%PORTDATA%%%%DATADIR%%/bench/results-3.5	479	%%DATADIR%%/bench/results-3.5
475	%%PORTDATA%%%%DATADIR%%/bench/results-3.7	480	%%DATADIR%%/bench/results-3.7
476	%%PORTDATA%%%%DATADIR%%/bench/results-3.8	481	%%DATADIR%%/bench/results-3.8
477	%%PORTDATA%%%%DATADIR%%/bench/results-3.9	482	%%DATADIR%%/bench/results-3.9
478	%%PORTDATA%%%%DATADIR%%/bench/results-4.0	483	%%DATADIR%%/bench/results-4.0
479	%%PORTDATA%%%%DATADIR%%/bench/results-4.1	484	%%DATADIR%%/bench/results-4.1
480	%%PORTDATA%%%%DATADIR%%/bench/results-4.2	485	%%DATADIR%%/bench/results-4.2
481	%%PORTDATA%%%%DATADIR%%/bench/results-4.3	486	%%DATADIR%%/bench/results-4.3
482	%%PORTDATA%%%%DATADIR%%/bench/results-5.0	487	%%DATADIR%%/bench/results-5.0
483	%%PORTDATA%%%%DATADIR%%/bench/results-5.1	488	%%DATADIR%%/bench/results-5.1
484	%%PORTDATA%%%%DATADIR%%/bench/results-6.0	489	%%DATADIR%%/bench/results-6.0
		490	%%DATADIR%%/bench/results-6.2
485	%%DATADIR%%/params/0README	491	%%DATADIR%%/params/0README
486	%%DATADIR%%/params/amber94.prm	492	%%DATADIR%%/params/amber94.prm
487	%%DATADIR%%/params/amber96.prm	493	%%DATADIR%%/params/amber96.prm
Lines 497-502 Link Here
497	%%DATADIR%%/params/charmm22cmap.prm	503	%%DATADIR%%/params/charmm22cmap.prm
498	%%DATADIR%%/params/dang.prm	504	%%DATADIR%%/params/dang.prm
499	%%DATADIR%%/params/hoch.prm	505	%%DATADIR%%/params/hoch.prm
		506	%%DATADIR%%/params/iwater.prm
500	%%DATADIR%%/params/mm2.prm	507	%%DATADIR%%/params/mm2.prm
501	%%DATADIR%%/params/mm3.prm	508	%%DATADIR%%/params/mm3.prm
502	%%DATADIR%%/params/mm3pro.prm	509	%%DATADIR%%/params/mm3pro.prm
Lines 508-602 Link Here
508	%%DATADIR%%/params/smoothua.prm	515	%%DATADIR%%/params/smoothua.prm
509	%%DATADIR%%/params/tiny.prm	516	%%DATADIR%%/params/tiny.prm
510	%%DATADIR%%/params/water.prm	517	%%DATADIR%%/params/water.prm
511	%%PORTDATA%%%%DATADIR%%/test/0README	518	%%DATADIR%%/test/0README
512	%%PORTDATA%%%%DATADIR%%/test/anion.dat	519	%%DATADIR%%/test/anion.dat
513	%%PORTDATA%%%%DATADIR%%/test/anion.dyn0	520	%%DATADIR%%/test/anion.dyn0
514	%%PORTDATA%%%%DATADIR%%/test/anion.key	521	%%DATADIR%%/test/anion.key
515	%%PORTDATA%%%%DATADIR%%/test/anion.log	522	%%DATADIR%%/test/anion.log
516	%%PORTDATA%%%%DATADIR%%/test/anion.run	523	%%DATADIR%%/test/anion.run
517	%%PORTDATA%%%%DATADIR%%/test/anion.xyz	524	%%DATADIR%%/test/anion.xyz
518	%%PORTDATA%%%%DATADIR%%/test/argon.1st	525	%%DATADIR%%/test/argon.1st
519	%%PORTDATA%%%%DATADIR%%/test/argon.key	526	%%DATADIR%%/test/argon.key
520	%%PORTDATA%%%%DATADIR%%/test/argon.log	527	%%DATADIR%%/test/argon.log
521	%%PORTDATA%%%%DATADIR%%/test/argon.run	528	%%DATADIR%%/test/argon.run
522	%%PORTDATA%%%%DATADIR%%/test/cluster.dat	529	%%DATADIR%%/test/cluster.dat
523	%%PORTDATA%%%%DATADIR%%/test/cluster.key	530	%%DATADIR%%/test/cluster.key
524	%%PORTDATA%%%%DATADIR%%/test/cluster.log	531	%%DATADIR%%/test/cluster.log
525	%%PORTDATA%%%%DATADIR%%/test/cluster.run	532	%%DATADIR%%/test/cluster.run
526	%%PORTDATA%%%%DATADIR%%/test/cluster.xyz	533	%%DATADIR%%/test/cluster.xyz
527	%%PORTDATA%%%%DATADIR%%/test/crambin.key	534	%%DATADIR%%/test/crambin.key
528	%%PORTDATA%%%%DATADIR%%/test/crambin.log	535	%%DATADIR%%/test/crambin.log
529	%%PORTDATA%%%%DATADIR%%/test/crambin.pdb	536	%%DATADIR%%/test/crambin.pdb
530	%%PORTDATA%%%%DATADIR%%/test/crambin.run	537	%%DATADIR%%/test/crambin.run
531	%%PORTDATA%%%%DATADIR%%/test/cyclohex.boat	538	%%DATADIR%%/test/cyclohex.boat
532	%%PORTDATA%%%%DATADIR%%/test/cyclohex.chair	539	%%DATADIR%%/test/cyclohex.chair
533	%%PORTDATA%%%%DATADIR%%/test/cyclohex.key	540	%%DATADIR%%/test/cyclohex.key
534	%%PORTDATA%%%%DATADIR%%/test/cyclohex.log	541	%%DATADIR%%/test/cyclohex.log
535	%%PORTDATA%%%%DATADIR%%/test/cyclohex.run	542	%%DATADIR%%/test/cyclohex.run
536	%%PORTDATA%%%%DATADIR%%/test/dhfr.dyn	543	%%DATADIR%%/test/dhfr.dyn
537	%%PORTDATA%%%%DATADIR%%/test/dhfr.key	544	%%DATADIR%%/test/dhfr.key
538	%%PORTDATA%%%%DATADIR%%/test/dhfr.log	545	%%DATADIR%%/test/dhfr.log
539	%%PORTDATA%%%%DATADIR%%/test/dhfr.run	546	%%DATADIR%%/test/dhfr.run
540	%%PORTDATA%%%%DATADIR%%/test/dhfr.xyz	547	%%DATADIR%%/test/dhfr.xyz
541	%%PORTDATA%%%%DATADIR%%/test/dialanine.key	548	%%DATADIR%%/test/dialanine.key
542	%%PORTDATA%%%%DATADIR%%/test/dialanine.log	549	%%DATADIR%%/test/dialanine.log
543	%%PORTDATA%%%%DATADIR%%/test/dialanine.run	550	%%DATADIR%%/test/dialanine.run
544	%%PORTDATA%%%%DATADIR%%/test/dialanine.xyz	551	%%DATADIR%%/test/dialanine.xyz
545	%%PORTDATA%%%%DATADIR%%/test/enkephalin.dat	552	%%DATADIR%%/test/enkephalin.dat
546	%%PORTDATA%%%%DATADIR%%/test/enkephalin.key	553	%%DATADIR%%/test/enkephalin.key
547	%%PORTDATA%%%%DATADIR%%/test/enkephalin.log	554	%%DATADIR%%/test/enkephalin.log
548	%%PORTDATA%%%%DATADIR%%/test/enkephalin.run	555	%%DATADIR%%/test/enkephalin.run
549	%%PORTDATA%%%%DATADIR%%/test/ethanol.000	556	%%DATADIR%%/test/ethanol.000
550	%%PORTDATA%%%%DATADIR%%/test/ethanol.020	557	%%DATADIR%%/test/ethanol.020
551	%%PORTDATA%%%%DATADIR%%/test/ethanol.040	558	%%DATADIR%%/test/ethanol.040
552	%%PORTDATA%%%%DATADIR%%/test/ethanol.060	559	%%DATADIR%%/test/ethanol.060
553	%%PORTDATA%%%%DATADIR%%/test/ethanol.080	560	%%DATADIR%%/test/ethanol.080
554	%%PORTDATA%%%%DATADIR%%/test/ethanol.100	561	%%DATADIR%%/test/ethanol.100
555	%%PORTDATA%%%%DATADIR%%/test/ethanol.120	562	%%DATADIR%%/test/ethanol.120
556	%%PORTDATA%%%%DATADIR%%/test/ethanol.140	563	%%DATADIR%%/test/ethanol.140
557	%%PORTDATA%%%%DATADIR%%/test/ethanol.160	564	%%DATADIR%%/test/ethanol.160
558	%%PORTDATA%%%%DATADIR%%/test/ethanol.180	565	%%DATADIR%%/test/ethanol.180
559	%%PORTDATA%%%%DATADIR%%/test/ethanol.dat	566	%%DATADIR%%/test/ethanol.dat
560	%%PORTDATA%%%%DATADIR%%/test/ethanol.key	567	%%DATADIR%%/test/ethanol.key
561	%%PORTDATA%%%%DATADIR%%/test/ethanol.log	568	%%DATADIR%%/test/ethanol.log
562	%%PORTDATA%%%%DATADIR%%/test/ethanol.run	569	%%DATADIR%%/test/ethanol.run
563	%%PORTDATA%%%%DATADIR%%/test/ethanol.xyz	570	%%DATADIR%%/test/ethanol.xyz
564	%%PORTDATA%%%%DATADIR%%/test/formamide.cell	571	%%DATADIR%%/test/formamide.cell
565	%%PORTDATA%%%%DATADIR%%/test/formamide.dat	572	%%DATADIR%%/test/formamide.dat
566	%%PORTDATA%%%%DATADIR%%/test/formamide.key	573	%%DATADIR%%/test/formamide.key
567	%%PORTDATA%%%%DATADIR%%/test/formamide.log	574	%%DATADIR%%/test/formamide.log
568	%%PORTDATA%%%%DATADIR%%/test/formamide.run	575	%%DATADIR%%/test/formamide.run
569	%%PORTDATA%%%%DATADIR%%/test/gpcr.blk	576	%%DATADIR%%/test/gpcr.blk
570	%%PORTDATA%%%%DATADIR%%/test/gpcr.key	577	%%DATADIR%%/test/gpcr.key
571	%%PORTDATA%%%%DATADIR%%/test/gpcr.log	578	%%DATADIR%%/test/gpcr.log
572	%%PORTDATA%%%%DATADIR%%/test/gpcr.run	579	%%DATADIR%%/test/gpcr.run
573	%%PORTDATA%%%%DATADIR%%/test/gpcr.xyz	580	%%DATADIR%%/test/gpcr.xyz
574	%%PORTDATA%%%%DATADIR%%/test/helix.1st	581	%%DATADIR%%/test/helix.1st
575	%%PORTDATA%%%%DATADIR%%/test/helix.key	582	%%DATADIR%%/test/helix.key
576	%%PORTDATA%%%%DATADIR%%/test/helix.log	583	%%DATADIR%%/test/helix.log
577	%%PORTDATA%%%%DATADIR%%/test/helix.run	584	%%DATADIR%%/test/helix.run
578	%%PORTDATA%%%%DATADIR%%/test/ifabp.dat	585	%%DATADIR%%/test/ice.key
579	%%PORTDATA%%%%DATADIR%%/test/ifabp.key	586	%%DATADIR%%/test/ice.log
580	%%PORTDATA%%%%DATADIR%%/test/ifabp.log	587	%%DATADIR%%/test/ice.run
581	%%PORTDATA%%%%DATADIR%%/test/ifabp.run	588	%%DATADIR%%/test/ice.xyz
582	%%PORTDATA%%%%DATADIR%%/test/ifabp.xyz	589	%%DATADIR%%/test/ifabp.dat
583	%%PORTDATA%%%%DATADIR%%/test/salt.cell	590	%%DATADIR%%/test/ifabp.key
584	%%PORTDATA%%%%DATADIR%%/test/salt.key	591	%%DATADIR%%/test/ifabp.log
585	%%PORTDATA%%%%DATADIR%%/test/salt.log	592	%%DATADIR%%/test/ifabp.run
586	%%PORTDATA%%%%DATADIR%%/test/salt.run	593	%%DATADIR%%/test/ifabp.xyz
587	%%PORTDATA%%%%DATADIR%%/test/tetraala.dat	594	%%DATADIR%%/test/salt.cell
588	%%PORTDATA%%%%DATADIR%%/test/tetraala.key	595	%%DATADIR%%/test/salt.key
589	%%PORTDATA%%%%DATADIR%%/test/tetraala.log	596	%%DATADIR%%/test/salt.log
590	%%PORTDATA%%%%DATADIR%%/test/tetraala.run	597	%%DATADIR%%/test/salt.run
591	%%PORTDATA%%%%DATADIR%%/test/water.key	598	%%DATADIR%%/test/tetraala.dat
592	%%PORTDATA%%%%DATADIR%%/test/water.log	599	%%DATADIR%%/test/tetraala.key
593	%%PORTDATA%%%%DATADIR%%/test/water.pot	600	%%DATADIR%%/test/tetraala.log
594	%%PORTDATA%%%%DATADIR%%/test/water.run	601	%%DATADIR%%/test/tetraala.run
595	%%PORTDATA%%%%DATADIR%%/test/water.xyz	602	%%DATADIR%%/test/water.key
		603	%%DATADIR%%/test/water.log
		604	%%DATADIR%%/test/water.pot
		605	%%DATADIR%%/test/water.run
		606	%%DATADIR%%/test/water.xyz
596	%%DATADIR%%/tinker.txt	607	%%DATADIR%%/tinker.txt
597	%%PORTDATA%%@dirrm %%DATADIR%%/test	608	@dirrm %%DATADIR%%/test
598	@dirrm %%DATADIR%%/params	609	@dirrm %%DATADIR%%/params
599	%%PORTDATA%%@dirrm %%DATADIR%%/bench	610	@dirrm %%DATADIR%%/bench
600	@dirrm %%DATADIR%%	611	@dirrm %%DATADIR%%
601	%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%	612	%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
602	%%PORTDOCS%%@dirrm %%DOCSDIR%%	613	%%PORTDOCS%%@dirrm %%DOCSDIR%%

Return to bug 177261

Lines 2-8 Link Here

(-)biology/tinker/Makefile (-19 / +13 lines)
2	# $FreeBSD: head/biology/tinker/Makefile 308054 2012-12-01 00:00:43Z sperber $	2	# $FreeBSD: head/biology/tinker/Makefile 308054 2012-12-01 00:00:43Z sperber $
3		3
4	PORTNAME= tinker	4	PORTNAME= tinker
5	PORTVERSION= 6.1.01	5	PORTVERSION= 6.2.01
6	CATEGORIES= biology	6	CATEGORIES= biology
7	MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/	7	MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/
8		8
Lines 11-18 Link Here
11		11
12	RESTRICTED= author requests no distribution except from his FTP site	12	RESTRICTED= author requests no distribution except from his FTP site
13		13
14	OPTIONS_DEFINE= OPTIMIZED_FFLAGS DATA DOCS EXAMPLES	14	OPTIONS_DEFINE= OPTIMIZED_FFLAGS DOCS EXAMPLES
15	OPTIONS_DEFAULT=DATA
16	OPTIMIZED_FFLAGS_DESC= compilation optimizations	15	OPTIMIZED_FFLAGS_DESC= compilation optimizations
17		16
18	WRKSRC= ${WRKDIR}/${PORTNAME}	17	WRKSRC= ${WRKDIR}/${PORTNAME}
Lines 28-36 Link Here
28		27
29	SUB_FILES= pkg-message	28	SUB_FILES= pkg-message
30		29
31	DOCS= 0README .pdf .txt
32	SAMPLES= 0README .make .dyn .int .frac .key .seq .pdb .xyz
33	BENCHES= 0README .dyn0 .log .key .run .xyz results
34		30
35	.include <bsd.port.pre.mk>	31	.include <bsd.port.pre.mk>
36		32
Lines 41-71 Link Here
41	.endif # i386	37	.endif # i386
42	.endif	38	.endif
43		39
44	.if empty(PORT_OPTIONS:MDATA)
45	NOPORTDATA= yes
46	.endif
47
48	post-extract:	40	post-extract:
49	@${CHMOD} -R u+w ${WRKSRC}	41	@${CHMOD} -R u+w ${WRKSRC}
50		42
51	post-install:	43	post-install:
52	@${MKDIR} ${DATADIR}	44	@${MKDIR} ${DATADIR}
53	${INSTALL_DATA} ${INSTALL_WRKSRC}/tinker.txt ${DATADIR}	45	(cd ${INSTALL_WRKSRC} && ${INSTALL_DATA} tinker.txt ${DATADIR})
54	@${MKDIR} ${DATADIR}/params
55	${INSTALL_DATA} ${WRKSRC}/params/* ${DATADIR}/params
56	.if ${PORT_OPTIONS:MDATA}
57	@${MKDIR} ${DATADIR}/bench	46	@${MKDIR} ${DATADIR}/bench
58	${INSTALL_DATA} ${BENCHES:S\|^\|${WRKSRC}/bench/\|} ${DATADIR}/bench	47	(cd ${WRKSRC}/bench && ${INSTALL_DATA} \
		48	0README .dyn0 .log .key .run .xyz results \
		49	${DATADIR}/bench)
		50	@${MKDIR} ${DATADIR}/params
		51	(cd ${WRKSRC}/params && ${INSTALL_DATA} * ${DATADIR}/params)
59	@${MKDIR} ${DATADIR}/test	52	@${MKDIR} ${DATADIR}/test
60	${INSTALL_DATA} ${WRKSRC}/test/* ${DATADIR}/test	53	(cd ${WRKSRC}/test && ${INSTALL_DATA} * ${DATADIR}/test)
61	.endif
62	.if ${PORT_OPTIONS:MDOCS}	54	.if ${PORT_OPTIONS:MDOCS}
63	@${MKDIR} ${DOCSDIR}	55	@${MKDIR} ${DOCSDIR}
64	${INSTALL_DATA} ${DOCS:S\|^\|${WRKSRC}/doc/\|} ${DOCSDIR}	56	(cd ${WRKSRC}/doc && ${INSTALL_DATA} 0README .pdf .txt ${DOCSDIR})
65	.endif	57	.endif
66	.if ${PORT_OPTIONS:MEXAMPLES}	58	.if ${PORT_OPTIONS:MEXAMPLES}
67	@${MKDIR} ${EXAMPLESDIR}	59	@${MKDIR} ${EXAMPLESDIR}
68	${INSTALL_DATA} ${SAMPLES:S\|^\|${WRKSRC}/example/\|} ${EXAMPLESDIR}	60	(cd ${WRKSRC}/example && ${INSTALL_DATA} \
		61	0README .make .dyn .int .frac .key .seq .pdb .xyz \
		62	${EXAMPLESDIR})
69	.endif	63	.endif
70	@${ECHO_CMD}	64	@${ECHO_CMD}
71	@${CAT} ${PKGMESSAGE}	65	@${CAT} ${PKGMESSAGE}

Lines 1-16 Link Here

(-)biology/tinker/files/patch-make__Makefile (-14 / +5 lines)
1	--- make/Makefile.orig 2012-06-29 14:51:42.000000000 +0900	1	--- make/Makefile.orig 2012-06-29 14:51:42.000000000 +0900
2	+++ make/Makefile 2012-11-10 00:12:19.000000000 +0900	2	+++ make/Makefile 2012-11-10 00:12:19.000000000 +0900
3	@@ -9,8 +9,8 @@
4	##
5	## 1. make all Build all the TINKER executables
6	## 2. make rename Move the executables to BINDIR
7	-## 3. make remove_links Create soft links in LINKDIR
8	-## 4. make create_links Remove soft links from LINKDIR
9	+## 3. make remove_links Remove soft links in LINKDIR
10	+## 4. make create_links Create soft links from LINKDIR
11	## 6. make listing Concatenate source to tinker.txt
12	## 5. make clean Delete objects and executables
13	##
14	@@ -30,9 +30,9 @@	3	@@ -30,9 +30,9 @@
15	## LINKDIR Linked Copies of TINKER Executables	4	## LINKDIR Linked Copies of TINKER Executables
16	##	5	##
Lines 64-70 Link Here
64		53
65	##	54	##
66	## Machine: Macintosh	55	## Machine: Macintosh
67	@@ -592,6 +606,8 @@	56	@@ -595,6 +609,8 @@
68	xyzpdb.x \	57	xyzpdb.x \
69	xyzsybyl.x	58	xyzsybyl.x
70		59
Lines 73-79 Link Here
73	.f.o:	62	.f.o:
74	${F77} ${F77FLAGS} ${OPTFLAGS} $*.f	63	${F77} ${F77FLAGS} ${OPTFLAGS} $*.f
75		64
76	@@ -601,8 +617,8 @@	65	@@ -604,8 +620,8 @@
77	server.o:	66	server.o:
78	${F77} ${F77FLAGS} ${OPTFLAGS} server.f	67	${F77} ${F77FLAGS} ${OPTFLAGS} server.f
79		68
Lines 84-90 Link Here
84		73
85	all: ${EXEFILES}	74	all: ${EXEFILES}
86		75
87	@@ -613,65 +629,65 @@	76	@@ -616,66 +632,66 @@
88	cat .i .f *.c > tinker.txt	77	cat .i .f *.c > tinker.txt
89		78
90	rename:	79	rename:
Lines 133-138 Link Here
133	- mv testgrad.x $(BINDIR)/testgrad	122	- mv testgrad.x $(BINDIR)/testgrad
134	- mv testhess.x $(BINDIR)/testhess	123	- mv testhess.x $(BINDIR)/testhess
135	- mv testpair.x $(BINDIR)/testpair	124	- mv testpair.x $(BINDIR)/testpair
		125	- mv testpol.x $(BINDIR)/testpol
136	- mv testrot.x $(BINDIR)/testrot	126	- mv testrot.x $(BINDIR)/testrot
137	- mv timer.x $(BINDIR)/timer	127	- mv timer.x $(BINDIR)/timer
138	- mv timerot.x $(BINDIR)/timerot	128	- mv timerot.x $(BINDIR)/timerot
Lines 192-197 Link Here
192	+ ${BSD_INSTALL_PROGRAM} testgrad.x $(BINDIR)/testgrad	182	+ ${BSD_INSTALL_PROGRAM} testgrad.x $(BINDIR)/testgrad
193	+ ${BSD_INSTALL_PROGRAM} testhess.x $(BINDIR)/testhess	183	+ ${BSD_INSTALL_PROGRAM} testhess.x $(BINDIR)/testhess
194	+ ${BSD_INSTALL_PROGRAM} testpair.x $(BINDIR)/testpair	184	+ ${BSD_INSTALL_PROGRAM} testpair.x $(BINDIR)/testpair
		185	+ ${BSD_INSTALL_PROGRAM} testpol.x $(BINDIR)/testpol
195	+ ${BSD_INSTALL_PROGRAM} testrot.x $(BINDIR)/testrot	186	+ ${BSD_INSTALL_PROGRAM} testrot.x $(BINDIR)/testrot
196	+ ${BSD_INSTALL_PROGRAM} timer.x $(BINDIR)/timer	187	+ ${BSD_INSTALL_PROGRAM} timer.x $(BINDIR)/timer
197	+ ${BSD_INSTALL_PROGRAM} timerot.x $(BINDIR)/timerot	188	+ ${BSD_INSTALL_PROGRAM} timerot.x $(BINDIR)/timerot