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# $FreeBSD: head/biology/blat/Makefile 333628 2013-11-12 22:02:02Z bapt $ |
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# $FreeBSD: head/biology/blat/Makefile 333628 2013-11-12 22:02:02Z bapt $ |
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PORTNAME= blat |
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PORTNAME= blat |
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PORTVERSION= 34 |
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PORTVERSION= 35 |
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CATEGORIES= biology |
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CATEGORIES= biology |
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MASTER_SITES= http://www.soe.ucsc.edu/~kent/src/ |
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MASTER_SITES= http://hgwdev.cse.ucsc.edu/~kent/src/ \ |
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http://users.soe.ucsc.edu/~kent/src/ |
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DISTNAME= ${PORTNAME}Src${PORTVERSION} |
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DISTNAME= ${PORTNAME}Src${PORTVERSION} |
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EXTRACT_SUFX= .zip |
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MAINTAINER= ports@FreeBSD.org |
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MAINTAINER= ports@FreeBSD.org |
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COMMENT= Fast tool for local sequence similarity searches |
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COMMENT= Fast tool for local sequence similarity searches |
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LIB_DEPENDS= libpng15.so:${PORTSDIR}/graphics/png |
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OPTIONS_DEFINE= DOCS |
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WRKSRC= ${WRKDIR}/${PORTNAME}Src |
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USES= gmake |
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USES= gmake |
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EXTRACT_SUFX= .zip |
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USE_OPENSSL= yes |
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MAKEFILE= makefile |
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MAKEFILE= makefile |
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WRKSRC= ${WRKDIR}/${PORTNAME}Src |
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MAKE_ENV= MACHTYPE="${ARCH}" HOME="${WRKSRC}/${BINDIR}" STRIP="${TRUE}" |
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MAKE_ENV+= HOME="${WRKSRC}/${BINDIR}" MACHTYPE="${ARCH}" |
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CPPFLAGS+= $$(libpng-config --cflags) |
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LDFLAGS+= $$(libpng-config --ldflags) |
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SUB_FILES= pkg-message |
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SUB_FILES= pkg-message |
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PORTDOCS= README |
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PLIST_FILES= ${EXECUTABLES:S,^,bin/,} \ |
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lib/blat/webBlat/webBlat \ |
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lib/blat/webBlat/install.txt |
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PLIST_DIRS= lib/blat/webBlat \ |
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lib/blat |
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EXECUTABLES= blat faToNib faToTwoBit gfClient gfServer nibFrag \ |
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EXECUTABLES= blat faToNib faToTwoBit gfClient gfServer nibFrag \ |
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pslPretty pslReps pslSort twoBitInfo twoBitToFa |
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pslPretty pslReps pslSort twoBitInfo twoBitToFa |
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PLIST_FILES+= ${EXECUTABLES:S,^,bin/,} |
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.include <bsd.port.options.mk> |
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PORTDOCS= README |
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PORTDATA= * |
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OPTIONS_DEFINE= DOCS |
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post-patch: |
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post-patch: |
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@${MKDIR} ${WRKSRC}/bin/${ARCH} |
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@${MKDIR} ${WRKSRC}/bin/${ARCH} |
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@${MKDIR} ${WRKSRC}/lib/${ARCH} |
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@${MKDIR} ${WRKSRC}/lib/${ARCH} |
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@${REINPLACE_CMD} -E 's,^(CC|CFLAGS)=,\1 ?=,g;s,-Werror,,g' \ |
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@${FIND} ${WRKSRC} -name "makefile" | ${XARGS} ${REINPLACE_CMD} -e \ |
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${WRKSRC}/inc/common.mk |
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's|$${DESTDIR}||g' |
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@${REINPLACE_CMD} -e \ |
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's|cd |$$(MAKE) -C | ; \ |
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s| &&.*||' ${WRKSRC}/makefile |
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@${REINPLACE_CMD} -e \ |
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's|^CC=|CC?=| ; \ |
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s|^COPT=.*|COPT=$${CPPFLAGS}| ; \ |
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s|^L=.*|L=$${LDFLAGS}|' ${WRKSRC}/inc/common.mk |
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do-install: |
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do-install: |
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.for exe in ${EXECUTABLES} |
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.for exe in ${EXECUTABLES} |
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${INSTALL_PROGRAM} ${WRKSRC}/bin/${ARCH}/${exe} ${STAGEDIR}${PREFIX}/bin |
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(cd ${WRKSRC}/bin/${ARCH} && ${INSTALL_PROGRAM} ${exe} \ |
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${STAGEDIR}${PREFIX}/bin) |
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.endfor |
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.endfor |
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@${MKDIR} ${STAGEDIR}${DATADIR}/webBlat |
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@${MKDIR} ${STAGEDIR}${PREFIX}/lib/blat/webBlat |
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${INSTALL_PROGRAM} ${WRKSRC}/webBlat/webBlat ${STAGEDIR}${DATADIR}/webBlat |
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(cd ${WRKSRC}/webBlat && ${INSTALL_PROGRAM} webBlat \ |
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${INSTALL_DATA} ${WRKSRC}/webBlat/install.txt ${STAGEDIR}${DATADIR}/webBlat |
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${STAGEDIR}${PREFIX}/lib/blat/webBlat) |
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(cd ${WRKSRC}/webBlat && ${INSTALL_DATA} install.txt \ |
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${STAGEDIR}${PREFIX}/lib/blat/webBlat) |
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@${MKDIR} ${STAGEDIR}${DOCSDIR} |
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@${MKDIR} ${STAGEDIR}${DOCSDIR} |
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${INSTALL_DATA} ${WRKSRC}/README ${STAGEDIR}${DOCSDIR} |
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(cd ${WRKSRC} && ${INSTALL_DATA} README ${STAGEDIR}${DOCSDIR}) |
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.include <bsd.port.mk> |
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.include <bsd.port.mk> |