Attachment #138656 for bug #184699

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# $FreeBSD: head/Mk/bsd.cran.mk 335044 2013-11-27 18:56:43Z dbn $
#
# Use the Comprehensive R Archive Network 
#
# MAINTAINER=	wen@FreeBSD.org
#
# Feature:	cran
# Usage:	USES=cran or USES=cran:ARGS
# Valid ARGS:	auto-plist
#
# auto-plist	The pkg-plist can be automatically compiled

.if !defined(_INCLUDE_USES_CRAN_MK)
_INCLUDE_USES_CRAN_MK=	yes

VALID_ARGS=	auto-plist

MASTER_SITE_CRAN+=	http://ftp.ctex.org/mirrors/CRAN/src/contrib/ \
			http://cran.rakanu.com/src/contrib/ \
			http://cran.ms.unimelb.edu.au/src/contrib/ \
			http://mirror.its.dal.ca/cran/src/contrib/ \
			http://mirrors.dotsrc.org/cran/src/contrib/ \
			http://cran.univ-lyon1.fr/src/contrib/ \
			http://ftp5.gwdg.de/pub/misc/cran/src/contrib/ \
			http://cran.stat.unipd.it/src/contrib/ \
			http://cran.md.tsukuba.ac.jp/src/contrib/ \
			http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/ \
			http://cran.cnr.berkeley.edu/src/contrib/
MASTER_SITE_CRAN_ARCHIVE+=	${MASTER_SITE_CRAN:S,$,Archive/${PORTNAME}/,}

MASTER_SITES?=	${MASTER_SITE_CRAN} ${MASTER_SITE_CRAN_ARCHIVE}

USE_FORTRAN=	yes
BUILD_DEPENDS+=	${LOCALBASE}/bin/R:${PORTSDIR}/math/R
RUN_DEPENDS+=	${LOCALBASE}/bin/R:${PORTSDIR}/math/R

PKGNAMEPREFIX?=	R-cran-

R_LIB_DIR=	lib/R/library
R_MOD_DIR?=	${R_LIB_DIR}/${PORTNAME}
PLIST_SUB+=	R_MOD_DIR=${R_MOD_DIR}
WRKSRC?=	${WRKDIR}/${PORTNAME}

NO_BUILD=	yes
R_COMMAND=	${LOCALBASE}/bin/R

.if !target(regression-test)
R_POSTCMD_CHECK_OPTIONS?=	--timings

.if !exists(${LOCALBASE}/bin/pdflatex)
R_POSTCMD_CHECK_OPTIONS+=	--no-manual --no-rebuild-vignettes
.endif

.if defined(NO_STAGE)
check-makevars::
	@${ECHO_MSG} "Makefile error: USE_R_MOD cannot be used with NO_STAGE"
	@${FALSE}
.endif

regression-test: build
	@cd ${WRKDIR} ; ${SETENV} ${MAKE_ENV} _R_CHECK_FORCE_SUGGESTS_=FALSE \
	${R_COMMAND} ${R_PRECMD_CHECK_OPTIONS} CMD check \
	${R_POSTCMD_CHECK_OPTIONS} ${PORTNAME}
.endif

.if !target(do-install)
R_POSTCMD_INSTALL_OPTIONS+=	-l ${STAGEDIR}${PREFIX}/${R_LIB_DIR}
.if defined(NOPORTDATA)
R_POSTCMD_INSTALL_OPTIONS+=	--no-data --no-demo
.else
R_POSTCMD_INSTALL_OPTIONS+=	--install-tests
.endif

.if defined(NOPORTDOCS)
R_POSTCMD_INSTALL_OPTIONS+=	--no-docs --no-html
.endif

do-install:
	@${MKDIR} ${STAGEDIR}${PREFIX}/${R_LIB_DIR}
	@cd ${WRKDIR} ; ${SETENV} ${MAKE_ENV} ${R_COMMAND} \
	${R_PRECMD_INSTALL_OPTIONS} CMD INSTALL \
	${R_POSTCMD_INSTALL_OPTIONS} ${PORTNAME}
.endif

.if ${cran_ARGS:Mauto-plist}
.if !target(post-install-script)
post-install-script:
	@${FIND} -ds ${STAGEDIR}${PREFIX}/${R_MOD_DIR} \( -type f -or -type l \) -print | \
		${SED} -E -e 's,^${STAGEDIR}${PREFIX}/?,,' >> ${TMPPLIST}
	@${FIND} -ds ${STAGEDIR}${PREFIX}/${R_MOD_DIR} -type d -print | ${SED} -E -e \
		's,^${STAGEDIR}${PREFIX}/?,@dirrm ,' >> ${TMPPLIST}
.endif
.endif

.endif #_INCLUDE_USES_CRAN_MK




# Date created:		2009-01-25
# Whom:			Wen Heping <wenheping@gmail.com>
#
# $FreeBSD$
#

CRAN_Include_MAINTAINER=	wen@FreeBSD.org

MASTER_SITE_CRAN+=	http://ftp.ctex.org/mirrors/CRAN/src/contrib/ \
			http://cran.rakanu.com/src/contrib/ \
			http://cran.ms.unimelb.edu.au/src/contrib/ \
			http://mirror.its.dal.ca/cran/src/contrib/ \
			http://mirrors.dotsrc.org/cran/src/contrib/ \
			http://cran.univ-lyon1.fr/src/contrib/ \
			http://ftp5.gwdg.de/pub/misc/cran/src/contrib/ \
			http://cran.stat.unipd.it/src/contrib/ \
			http://cran.md.tsukuba.ac.jp/src/contrib/ \
			http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/ \
			http://cran.cnr.berkeley.edu/src/contrib/
MASTER_SITE_CRAN_ARCHIVE+=	${MASTER_SITE_CRAN:S,$,Archive/${PORTNAME}/,}

MASTER_SITES?=	${MASTER_SITE_CRAN} ${MASTER_SITE_CRAN_ARCHIVE}

USE_FORTRAN=	yes
BUILD_DEPENDS+=	${LOCALBASE}/bin/R:${PORTSDIR}/math/R
RUN_DEPENDS+=	${LOCALBASE}/bin/R:${PORTSDIR}/math/R

PKGNAMEPREFIX?=	R-cran-

R_LIB_DIR=	lib/R/library
R_MOD_DIR?=	${R_LIB_DIR}/${PORTNAME}
PLIST_SUB+=	R_MOD_DIR=${R_MOD_DIR}
WRKSRC?=	${WRKDIR}/${PORTNAME}

NO_BUILD=	yes
R_COMMAND=	${LOCALBASE}/bin/R

.if !target(regression-test)
R_POSTCMD_CHECK_OPTIONS?=	--timings

.if !exists(${LOCALBASE}/bin/pdflatex)
R_POSTCMD_CHECK_OPTIONS+=	--no-manual --no-rebuild-vignettes
.endif

.if defined(NO_STAGE)
check-makevars::
	@${ECHO_MSG} "Makefile error: USE_R_MOD cannot be used with NO_STAGE"
	@${FALSE}
.endif

regression-test: build
	@cd ${WRKDIR} ; ${SETENV} ${MAKE_ENV} _R_CHECK_FORCE_SUGGESTS_=FALSE \
	${R_COMMAND} ${R_PRECMD_CHECK_OPTIONS} CMD check \
	${R_POSTCMD_CHECK_OPTIONS} ${PORTNAME}
.endif

.if !target(do-install)
R_POSTCMD_INSTALL_OPTIONS+=	-l ${STAGEDIR}${PREFIX}/${R_LIB_DIR}
.if defined(NOPORTDATA)
R_POSTCMD_INSTALL_OPTIONS+=	--no-data --no-demo
.else
R_POSTCMD_INSTALL_OPTIONS+=	--install-tests
.endif

.if defined(NOPORTDOCS)
R_POSTCMD_INSTALL_OPTIONS+=	--no-docs --no-html
.endif

do-install:
	@${MKDIR} ${STAGEDIR}${PREFIX}/${R_LIB_DIR}
	@cd ${WRKDIR} ; ${SETENV} ${MAKE_ENV} ${R_COMMAND} \
	${R_PRECMD_INSTALL_OPTIONS} CMD INSTALL \
	${R_POSTCMD_INSTALL_OPTIONS} ${PORTNAME}
.endif

.if defined(R_MOD_AUTOPLIST)
.if !target(post-install-script)
post-install-script:
	@${FIND} -ds ${STAGEDIR}${PREFIX}/${R_MOD_DIR} \( -type f -or -type l \) -print | \
		${SED} -E -e 's,^${STAGEDIR}${PREFIX}/?,,' >> ${TMPPLIST}
	@${FIND} -ds ${STAGEDIR}${PREFIX}/${R_MOD_DIR} -type d -print | ${SED} -E -e \
		's,^${STAGEDIR}${PREFIX}/?,@dirrm ,' >> ${TMPPLIST}
.endif
.endif





#				  Implies inclusion of bsd.python.mk. (Also see
#				  that file for more information on USE_PYTHON_*
#				  and USE_PYDISTUTILS).
# USE_R_MOD	- If set, this port uses the Comprehensive R Archive Network.
#		  See bsd.cran.mk for more details.
# USE_RUBY		- If set, this port relies on the Ruby language.
#				  Implies inclusion of bsd.ruby.mk.  (Also see
#				  that file for more information on USE_RUBY_*).

.include "${PORTSDIR}/Mk/bsd.java.mk"
.endif

.if defined(USE_R_MOD)
.include "${PORTSDIR}/Mk/bsd.cran.mk"
.endif

.if defined(USE_RUBY) || defined(USE_LIBRUBY)
.include "${PORTSDIR}/Mk/bsd.ruby.mk"
.endif

Lines 15-21 LICENSE_COMB= dual Link Here

(-)b/astro/R-cran-maptools/Makefile (-2 / +1 lines)
15		15
16	RUN_DEPENDS= R-cran-sp>=1.0.11:${PORTSDIR}/math/R-cran-sp	16	RUN_DEPENDS= R-cran-sp>=1.0.11:${PORTSDIR}/math/R-cran-sp
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 12-18 COMMENT= Serialize R objects to JSON, JavaScript Object Notation Link Here

(-)b/converters/R-cran-RJSONIO/Makefile (-2 / +1 lines)
12		12
13	LICENSE= BSD	13	LICENSE= BSD
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 12-18 COMMENT= JSON for R Link Here

(-)b/converters/R-cran-rjson/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 13-19 COMMENT= R Database Interface Link Here

(-)b/databases/R-cran-DBI/Makefile (-2 / +1 lines)
13	LICENSE= LGPL20 LGPL21 LGPL3	13	LICENSE= LGPL20 LGPL21 LGPL3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 15-21 LICENSE= GPLv2 Link Here

(-)b/databases/R-cran-RMySQL/Makefile (-2 / +1 lines)
15	RUN_DEPENDS= R-cran-DBI>=0.2.2:${PORTSDIR}/databases/R-cran-DBI	15	RUN_DEPENDS= R-cran-DBI>=0.2.2:${PORTSDIR}/databases/R-cran-DBI
16		16
17	USE_MYSQL= yes	17	USE_MYSQL= yes
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 15-21 LICENSE= AL2 Link Here

(-)b/databases/R-cran-RSQLite.extfuns/Makefile (-2 / +1 lines)
15	BUILD_DEPENDS= R-cran-RSQLite>=0.11.1:${PORTSDIR}/databases/R-cran-RSQLite	15	BUILD_DEPENDS= R-cran-RSQLite>=0.11.1:${PORTSDIR}/databases/R-cran-RSQLite
16	RUN_DEPENDS:= ${BUILD_DEPENDS}	16	RUN_DEPENDS:= ${BUILD_DEPENDS}
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 15-21 LICENSE= LGPL20 Link Here

(-)b/databases/R-cran-RSQLite/Makefile (-2 / +1 lines)
15	BUILD_DEPENDS= R-cran-DBI>=0.2.5:${PORTSDIR}/databases/R-cran-DBI	15	BUILD_DEPENDS= R-cran-DBI>=0.2.5:${PORTSDIR}/databases/R-cran-DBI
16	RUN_DEPENDS:= ${BUILD_DEPENDS}	16	RUN_DEPENDS:= ${BUILD_DEPENDS}
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 20-26 BUILD_DEPENDS= R-cran-proto>=0.3.9.2_6:${PORTSDIR}/devel/R-cran-proto \ Link Here

(-)b/databases/R-cran-sqldf/Makefile (-2 / +1 lines)
20	R-cran-RSQLite.extfuns>=0.0.1:${PORTSDIR}/databases/R-cran-RSQLite.extfuns	20	R-cran-RSQLite.extfuns>=0.0.1:${PORTSDIR}/databases/R-cran-RSQLite.extfuns
21	RUN_DEPENDS:= ${BUILD_DEPENDS}	21	RUN_DEPENDS:= ${BUILD_DEPENDS}
22		22
23	USE_R_MOD= yes	23	USES= cran:auto-plist
24	R_MOD_AUTOPLIST= yes
25		24
26	.include <bsd.port.mk>	25	.include <bsd.port.mk>

Lines 13-19 COMMENT= Create Global Function Defaults Link Here

(-)b/devel/R-cran-Defaults/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 11-17 COMMENT= Harrell Miscellaneous functions useful for data analysis Link Here

(-)b/devel/R-cran-Hmisc/Makefile (-2 / +1 lines)
11		11
12	LICENSE= GPLv2	12	LICENSE= GPLv2
13		13
14	USE_R_MOD= yes	14	USES= cran:auto-plist
15	R_MOD_AUTOPLIST= yes
16		15
17	.include <bsd.port.mk>	16	.include <bsd.port.mk>

Lines 12-18 COMMENT= R functions implementing a Unit Testing framework Link Here

(-)b/devel/R-cran-RUnit/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 12-18 COMMENT= Seamless R and C++ Integration Link Here

(-)b/devel/R-cran-Rcpp/Makefile (-2 / +1 lines)
12	LICENSE= GPLv2 GPLv3	12	LICENSE= GPLv2 GPLv3
13	LICENSE_COMB= dual	13	LICENSE_COMB= dual
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 13-19 COMMENT= Functions for Bitwise operations Link Here

(-)b/devel/R-cran-bitops/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 13-19 LICENSE= GPLv3 Link Here

(-)b/devel/R-cran-caTools/Makefile (-2 / +1 lines)
13		13
14	RUN_DEPENDS= R-cran-bitops>0:${PORTSDIR}/devel/R-cran-bitops	14	RUN_DEPENDS= R-cran-bitops>0:${PORTSDIR}/devel/R-cran-bitops
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 16-22 RUN_DEPENDS= R-cran-reshape2>0:${PORTSDIR}/devel/R-cran-reshape2 \ Link Here

(-)b/devel/R-cran-caret/Makefile (-2 / +1 lines)
16	R-cran-plyr>0:${PORTSDIR}/devel/R-cran-plyr \	16	R-cran-plyr>0:${PORTSDIR}/devel/R-cran-plyr \
17	R-cran-foreach>0:${PORTSDIR}/devel/R-cran-foreach	17	R-cran-foreach>0:${PORTSDIR}/devel/R-cran-foreach
18		18
19	USE_R_MOD= yes	19	USES= cran:auto-plist
20	R_MOD_AUTOPLIST= yes
21		20
22	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 12-18 COMMENT= R package for creating objects which can handle dates and times Link Here

(-)b/devel/R-cran-chron/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 14-20 LICENSE= AL2 Link Here

(-)b/devel/R-cran-foreach/Makefile (-2 / +1 lines)
14		14
15	RUN_DEPENDS= R-cran-iterators>=1.0.0:${PORTSDIR}/devel/R-cran-iterators	15	RUN_DEPENDS= R-cran-iterators>=1.0.0:${PORTSDIR}/devel/R-cran-iterators
16		16
17	USE_R_MOD= yes	17	USES= cran:auto-plist
18	R_MOD_AUTOPLIST= yes
19		18
20	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 11-17 COMMENT= Extensions to AdaBoost algorithm Link Here

(-)b/devel/R-cran-gbm/Makefile (-2 / +1 lines)
11		11
12	LICENSE= GPLv2	12	LICENSE= GPLv2
13		13
14	USE_R_MOD= yes	14	USES= cran:auto-plist
15	R_MOD_AUTOPLIST= yes
16		15
17	.include <bsd.port.mk>	16	.include <bsd.port.mk>

Lines 14-22 LICENSE= GPLv2 Link Here

(-)b/devel/R-cran-gdata/Makefile (-3 / +1 lines)
14		14
15	RUN_DEPENDS= R-cran-gtools>0:${PORTSDIR}/devel/R-cran-gtools	15	RUN_DEPENDS= R-cran-gtools>0:${PORTSDIR}/devel/R-cran-gtools
16		16
17	USES= perl5	17	USES= cran:auto-plist perl5
18	USE_PERL5= run	18	USE_PERL5= run
19	USE_R_MOD= yes
20	R_MOD_AUTOPLIST= yes
21		19
22	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 11-17 COMMENT= Lasso and elastic-net regularized generalized linear models Link Here

(-)b/devel/R-cran-glmnet/Makefile (-2 / +1 lines)
11		11
12	LICENSE= GPLv2	12	LICENSE= GPLv2
13		13
14	USE_R_MOD= yes	14	USES= cran:auto-plist
15	R_MOD_AUTOPLIST= yes
16		15
17	.include <bsd.port.mk>	16	.include <bsd.port.mk>

Lines 14-20 LICENSE= GPLv2 Link Here

(-)b/devel/R-cran-gsubfn/Makefile (-2 / +1 lines)
14		14
15	RUN_DEPENDS= R-cran-proto>=0.3.9.2_6:${PORTSDIR}/devel/R-cran-proto	15	RUN_DEPENDS= R-cran-proto>=0.3.9.2_6:${PORTSDIR}/devel/R-cran-proto
16		16
17	USE_R_MOD= yes	17	USES= cran:auto-plist
18	R_MOD_AUTOPLIST= yes
19		18
20	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 11-17 COMMENT= Various R programming tools Link Here

(-)b/devel/R-cran-gtools/Makefile (-2 / +1 lines)
11		11
12	LICENSE= LGPL21	12	LICENSE= LGPL21
13		13
14	USE_R_MOD= yes	14	USES= cran:auto-plist
15	R_MOD_AUTOPLIST= yes
16		15
17	.include <bsd.port.mk>	16	.include <bsd.port.mk>

Lines 12-18 COMMENT= Iterator construct for R Link Here

(-)b/devel/R-cran-iterators/Makefile (-2 / +1 lines)
12		12
13	LICENSE= AL2	13	LICENSE= AL2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 12-18 COMMENT= Iterator Tools for R Link Here

(-)b/devel/R-cran-itertools/Makefile (-2 / +1 lines)
12		12
13	RUN_DEPENDS= R-cran-iterators>=1.0.0:${PORTSDIR}/devel/R-cran-iterators	13	RUN_DEPENDS= R-cran-iterators>=1.0.0:${PORTSDIR}/devel/R-cran-iterators
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 12-18 COMMENT= Memoise functions for R Link Here

(-)b/devel/R-cran-memoise/Makefile (-2 / +1 lines)
12		12
13	RUN_DEPENDS= R-cran-digest>=0:${PORTSDIR}/security/R-cran-digest	13	RUN_DEPENDS= R-cran-digest>=0:${PORTSDIR}/security/R-cran-digest
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 13-19 COMMENT= Tools for splitting, applying, and combining data Link Here

(-)b/devel/R-cran-plyr/Makefile (-2 / +1 lines)
13	RUN_DEPENDS= R-cran-itertools>0:${PORTSDIR}/devel/R-cran-itertools \	13	RUN_DEPENDS= R-cran-itertools>0:${PORTSDIR}/devel/R-cran-itertools \
14	R-cran-iterators>0:${PORTSDIR}/devel/R-cran-iterators	14	R-cran-iterators>0:${PORTSDIR}/devel/R-cran-iterators
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 12-18 COMMENT= Prototype object-based programming Link Here

(-)b/devel/R-cran-proto/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 11-17 COMMENT= Classification based on a forest of trees using random inputs Link Here

(-)b/devel/R-cran-randomForest/Makefile (-2 / +1 lines)
11		11
12	RUN_DEPENDS= R-cran-RColorBrewer>=1.0.5_6:${PORTSDIR}/graphics/R-cran-RColorBrewer	12	RUN_DEPENDS= R-cran-RColorBrewer>=1.0.5_6:${PORTSDIR}/graphics/R-cran-RColorBrewer
13		13
14	USE_R_MOD= yes	14	USES= cran:auto-plist
15	R_MOD_AUTOPLIST= yes
16		15
17	.include <bsd.port.mk>	16	.include <bsd.port.mk>

Lines 14-20 LICENSE= MIT Link Here

(-)b/devel/R-cran-reshape/Makefile (-2 / +1 lines)
14		14
15	RUN_DEPENDS= R-cran-plyr>0:${PORTSDIR}/devel/R-cran-plyr	15	RUN_DEPENDS= R-cran-plyr>0:${PORTSDIR}/devel/R-cran-plyr
16		16
17	USE_R_MOD= yes	17	USES= cran:auto-plist
18	R_MOD_AUTOPLIST= yes
19		18
20	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 15-21 LICENSE= MIT Link Here

(-)b/devel/R-cran-reshape2/Makefile (-2 / +1 lines)
15	RUN_DEPENDS= R-cran-plyr>=1.5:${PORTSDIR}/devel/R-cran-plyr \	15	RUN_DEPENDS= R-cran-plyr>=1.5:${PORTSDIR}/devel/R-cran-plyr \
16	R-cran-stringr>0:${PORTSDIR}/textproc/R-cran-stringr	16	R-cran-stringr>0:${PORTSDIR}/textproc/R-cran-stringr
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 15-21 LICENSE= GPLv1 Link Here

(-)b/finance/R-cran-PerformanceAnalytics/Makefile (-2 / +1 lines)
15	RUN_DEPENDS= R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo \	15	RUN_DEPENDS= R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo \
16	R-cran-xts>=0.8.9:${PORTSDIR}/math/R-cran-xts	16	R-cran-xts>=0.8.9:${PORTSDIR}/math/R-cran-xts
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 15-21 LICENSE= BSD Link Here

(-)b/finance/R-cran-RFinanceYJ/Makefile (-2 / +1 lines)
15	RUN_DEPENDS= R-cran-XML>0:${PORTSDIR}/textproc/R-cran-XML \	15	RUN_DEPENDS= R-cran-XML>0:${PORTSDIR}/textproc/R-cran-XML \
16	R-cran-xts>0:${PORTSDIR}/math/R-cran-xts	16	R-cran-xts>0:${PORTSDIR}/math/R-cran-xts
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 14-20 LICENSE= GPLv2 Link Here

(-)b/finance/R-cran-TTR/Makefile (-2 / +1 lines)
14		14
15	RUN_DEPENDS= R-cran-xts>=0.9.3:${PORTSDIR}/math/R-cran-xts	15	RUN_DEPENDS= R-cran-xts>=0.9.3:${PORTSDIR}/math/R-cran-xts
16		16
17	USE_R_MOD= yes	17	USES= cran:auto-plist
18	R_MOD_AUTOPLIST= yes
19		18
20	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 13-19 COMMENT= Conditional Correlation GARCH models Link Here

(-)b/finance/R-cran-ccgarch/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 18-24 RUN_DEPENDS= R-cran-timeDate>0:${PORTSDIR}/finance/R-cran-timeDate \ Link Here

(-)b/finance/R-cran-fBasics/Makefile (-2 / +1 lines)
18	R-cran-stabledist>0:${PORTSDIR}/math/R-cran-stabledist \	18	R-cran-stabledist>0:${PORTSDIR}/math/R-cran-stabledist \
19	R-cran-gss>0:${PORTSDIR}/math/R-cran-gss	19	R-cran-gss>0:${PORTSDIR}/math/R-cran-gss
20		20
21	USE_R_MOD= yes	21	USES= cran:auto-plist
22	R_MOD_AUTOPLIST= yes
23		22
24	.include <bsd.port.mk>	23	.include <bsd.port.mk>

Lines 17-23 RUN_DEPENDS= R-cran-timeDate>0:${PORTSDIR}/finance/R-cran-timeDate \ Link Here

(-)b/finance/R-cran-fGarch/Makefile (-2 / +1 lines)
17	R-cran-timeSeries>0:${PORTSDIR}/finance/R-cran-timeSeries \	17	R-cran-timeSeries>0:${PORTSDIR}/finance/R-cran-timeSeries \
18	R-cran-fBasics>=2100.78:${PORTSDIR}/finance/R-cran-fBasics	18	R-cran-fBasics>=2100.78:${PORTSDIR}/finance/R-cran-fBasics
19		19
20	USE_R_MOD= yes	20	USES= cran:auto-plist
21	R_MOD_AUTOPLIST= yes
22		21
23	.include <bsd.port.mk>	22	.include <bsd.port.mk>

Lines 15-21 LICENSE_COMB= dual Link Here

(-)b/finance/R-cran-gmm/Makefile (-2 / +1 lines)
15		15
16	RUN_DEPENDS= R-cran-sandwich>0:${PORTSDIR}/math/R-cran-sandwich	16	RUN_DEPENDS= R-cran-sandwich>0:${PORTSDIR}/math/R-cran-sandwich
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 16-22 RUN_DEPENDS= R-cran-zoo>=0:${PORTSDIR}/math/R-cran-zoo \ Link Here

(-)b/finance/R-cran-lmtest/Makefile (-2 / +1 lines)
16	R-cran-strucchange>0:${PORTSDIR}/finance/R-cran-strucchange \	16	R-cran-strucchange>0:${PORTSDIR}/finance/R-cran-strucchange \
17	R-cran-sandwich>=2.2.4:${PORTSDIR}/math/R-cran-sandwich	17	R-cran-sandwich>=2.2.4:${PORTSDIR}/math/R-cran-sandwich
18		18
19	USE_R_MOD= yes	19	USES= cran:auto-plist
20	R_MOD_AUTOPLIST= yes
21		20
22	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 18-24 RUN_DEPENDS= R-cran-bdsmatrix>0:${PORTSDIR}/math/R-cran-bdsmatrix \ Link Here

(-)b/finance/R-cran-plm/Makefile (-2 / +1 lines)
18	R-cran-sandwich>0:${PORTSDIR}/math/R-cran-sandwich \	18	R-cran-sandwich>0:${PORTSDIR}/math/R-cran-sandwich \
19	R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo	19	R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo
20		20
21	USE_R_MOD= yes	21	USES= cran:auto-plist
22	R_MOD_AUTOPLIST= yes
23		22
24	.include <bsd.port.mk>	23	.include <bsd.port.mk>

Lines 17-23 RUN_DEPENDS= R-cran-Defaults>0:${PORTSDIR}/devel/R-cran-Defaults \ Link Here

(-)b/finance/R-cran-quantmod/Makefile (-2 / +1 lines)
17	R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo \	17	R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo \
18	R-cran-TTR>=0.2:${PORTSDIR}/finance/R-cran-TTR	18	R-cran-TTR>=0.2:${PORTSDIR}/finance/R-cran-TTR
19		19
20	USE_R_MOD= yes	20	USES= cran:auto-plist
21	R_MOD_AUTOPLIST= yes
22		21
23	.include <bsd.port.mk>	22	.include <bsd.port.mk>

Lines 14-20 LICENSE= GPLv2 Link Here

(-)b/finance/R-cran-strucchange/Makefile (-2 / +1 lines)
14	RUN_DEPENDS= R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo \	14	RUN_DEPENDS= R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo \
15	R-cran-sandwich>0:${PORTSDIR}/math/R-cran-sandwich	15	R-cran-sandwich>0:${PORTSDIR}/math/R-cran-sandwich
16		16
17	USE_R_MOD= yes	17	USES= cran:auto-plist
18	R_MOD_AUTOPLIST= yes
19		18
20	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 13-19 COMMENT= Chronological and Calendar Objects Link Here

(-)b/finance/R-cran-timeDate/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 15-21 LICENSE_COMB= dual Link Here

(-)b/finance/R-cran-timeSeries/Makefile (-2 / +1 lines)
15		15
16	RUN_DEPENDS= R-cran-timeDate>=2150.95:${PORTSDIR}/finance/R-cran-timeDate	16	RUN_DEPENDS= R-cran-timeDate>=2150.95:${PORTSDIR}/finance/R-cran-timeDate
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 18-24 BUILD_DEPENDS= R-cran-quadprog>0:${PORTSDIR}/math/R-cran-quadprog \ Link Here

(-)b/finance/R-cran-tseries/Makefile (-2 / +1 lines)
18	RUN_DEPENDS= R-cran-quadprog>0:${PORTSDIR}/math/R-cran-quadprog \	18	RUN_DEPENDS= R-cran-quadprog>0:${PORTSDIR}/math/R-cran-quadprog \
19	R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo	19	R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo
20		20
21	USE_R_MOD= yes	21	USES= cran:auto-plist
22	R_MOD_AUTOPLIST= yes
23		22
24	.include <bsd.port.mk>	23	.include <bsd.port.mk>

Lines 13-19 COMMENT= Unit root and cointegration tests for time series data Link Here

(-)b/finance/R-cran-urca/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 18-24 RUN_DEPENDS= R-cran-strucchange>0:${PORTSDIR}/finance/R-cran-strucchange \ Link Here

(-)b/finance/R-cran-vars/Makefile (-2 / +1 lines)
18	R-cran-lmtest>=0.9.26:${PORTSDIR}/finance/R-cran-lmtest \	18	R-cran-lmtest>=0.9.26:${PORTSDIR}/finance/R-cran-lmtest \
19	R-cran-sandwich>=2.2.4:${PORTSDIR}/math/R-cran-sandwich	19	R-cran-sandwich>=2.2.4:${PORTSDIR}/math/R-cran-sandwich
20		20
21	USE_R_MOD= yes	21	USES= cran:auto-plist
22	R_MOD_AUTOPLIST= yes
23		22
24	.include <bsd.port.mk>	23	.include <bsd.port.mk>

Lines 16-22 BUILD_DEPENDS= curl-config:${PORTSDIR}/ftp/curl Link Here

(-)b/ftp/R-cran-RCurl/Makefile (-2 / +1 lines)
16	RUN_DEPENDS= R-cran-bitops>0:${PORTSDIR}/devel/R-cran-bitops	16	RUN_DEPENDS= R-cran-bitops>0:${PORTSDIR}/devel/R-cran-bitops
17	LIB_DEPENDS= curl:${PORTSDIR}/ftp/curl	17	LIB_DEPENDS= curl:${PORTSDIR}/ftp/curl
18		18
19	USE_R_MOD= yes	19	USES= cran:auto-plist
20	R_MOD_AUTOPLIST= yes
21		20
22	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 17-23 RUN_DEPENDS:= ${BUILD_DEPENDS} Link Here

(-)b/graphics/R-cran-GDD/Makefile (-2 / +1 lines)
17		17
18	WRKSRC= ${WRKDIR}/${PORTNAME}	18	WRKSRC= ${WRKDIR}/${PORTNAME}
19		19
20	USE_R_MOD= yes	20	USES= cran:auto-plist
21	R_MOD_AUTOPLIST= yes
22		21
23	.include <bsd.port.mk>	22	.include <bsd.port.mk>

Lines 12-18 COMMENT= ColorBrewer palettes Link Here

(-)b/graphics/R-cran-RColorBrewer/Makefile (-2 / +1 lines)
12		12
13	LICENSE= AL2	13	LICENSE= AL2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 12-18 COMMENT= Color Space Manipulation Link Here

(-)b/graphics/R-cran-colorspace/Makefile (-2 / +1 lines)
12		12
13	LICENSE= BSD	13	LICENSE= BSD
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 15-21 LICENSE_COMB= dual Link Here

(-)b/graphics/R-cran-diagram/Makefile (-2 / +1 lines)
15		15
16	RUN_DEPENDS= R-cran-shape>0:${PORTSDIR}/graphics/R-cran-shape	16	RUN_DEPENDS= R-cran-shape>0:${PORTSDIR}/graphics/R-cran-shape
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 12-18 COMMENT= Color schemes for dichromats Link Here

(-)b/graphics/R-cran-dichromat/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 18-24 RUN_DEPENDS= R-cran-plyr>=1.7.1:${PORTSDIR}/devel/R-cran-plyr \ Link Here

(-)b/graphics/R-cran-ggplot2/Makefile (-2 / +1 lines)
18	R-cran-scales>=0.2.3:${PORTSDIR}/graphics/R-cran-scales \	18	R-cran-scales>=0.2.3:${PORTSDIR}/graphics/R-cran-scales \
19	R-cran-proto>=0:${PORTSDIR}/devel/R-cran-proto	19	R-cran-proto>=0:${PORTSDIR}/devel/R-cran-proto
20		20
21	USE_R_MOD= yes	21	USES= cran:auto-plist
22	R_MOD_AUTOPLIST= yes
23		22
24	.include <bsd.port.mk>	23	.include <bsd.port.mk>

Lines 18-24 LICENSE_PERMS_CW= auto-accept Link Here

(-)b/graphics/R-cran-munsell/Makefile (-2 / +1 lines)
18		18
19	RUN_DEPENDS= R-cran-colorspace>0:${PORTSDIR}/graphics/R-cran-colorspace	19	RUN_DEPENDS= R-cran-colorspace>0:${PORTSDIR}/graphics/R-cran-colorspace
20		20
21	USE_R_MOD= yes	21	USES= cran:auto-plist
22	R_MOD_AUTOPLIST= yes
23		22
24	.include <bsd.port.mk>	23	.include <bsd.port.mk>

Lines 12-18 COMMENT= Bitmap Images ("Pixel Maps") Link Here

(-)b/graphics/R-cran-pixmap/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 15-21 LICENSE_COMB= dual Link Here

(-)b/graphics/R-cran-png/Makefile (-2 / +1 lines)
15		15
16	LIB_DEPENDS= png15:${PORTSDIR}/graphics/png	16	LIB_DEPENDS= png15:${PORTSDIR}/graphics/png
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 16-23 LIB_DEPENDS= gdal:${PORTSDIR}/graphics/gdal \ Link Here

(-)b/graphics/R-cran-rgdal/Makefile (-2 / +1 lines)
16	proj:${PORTSDIR}/graphics/proj	16	proj:${PORTSDIR}/graphics/proj
17	RUN_DEPENDS= R-cran-sp>=1.0.9:${PORTSDIR}/math/R-cran-sp	17	RUN_DEPENDS= R-cran-sp>=1.0.9:${PORTSDIR}/math/R-cran-sp
18		18
19	USE_R_MOD= yes	19	USES= cran:auto-plist
20	R_MOD_AUTOPLIST= yes
21		20
22	R_POSTCMD_INSTALL_OPTIONS+= --configure-args="--with-proj-lib=${LOCALBASE}/lib"	21	R_POSTCMD_INSTALL_OPTIONS+= --configure-args="--with-proj-lib=${LOCALBASE}/lib"
23		22

Lines 15-21 RUN_DEPENDS= R-cran-pixmap>0:${PORTSDIR}/graphics/R-cran-pixmap Link Here

(-)b/graphics/R-cran-rtiff/Makefile (-2 / +1 lines)
15		15
16	LICENSE_FILE= ${WRKSRC}/LICENSE	16	LICENSE_FILE= ${WRKSRC}/LICENSE
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 18-24 RUN_DEPENDS= R-cran-RColorBrewer>=0:${PORTSDIR}/graphics/R-cran-RColorBrewer \ Link Here

(-)b/graphics/R-cran-scales/Makefile (-2 / +1 lines)
18	R-cran-plyr>=1.2:${PORTSDIR}/devel/R-cran-plyr \	18	R-cran-plyr>=1.2:${PORTSDIR}/devel/R-cran-plyr \
19	R-cran-labeling>=0:${PORTSDIR}/math/R-cran-labeling	19	R-cran-labeling>=0:${PORTSDIR}/math/R-cran-labeling
20		20
21	USE_R_MOD= yes	21	USES= cran:auto-plist
22	R_MOD_AUTOPLIST= yes
23		22
24	.include <bsd.port.mk>	23	.include <bsd.port.mk>

Lines 12-18 COMMENT= Functions for plotting graphical shapes, colors Link Here

(-)b/graphics/R-cran-shape/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv3	13	LICENSE= GPLv3
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 15-21 LICENSE= BSD Link Here

(-)b/math/R-cran-ChangeAnomalyDetection/Makefile (-2 / +1 lines)
15	RUN_DEPENDS= R-cran-TTR>0:${PORTSDIR}/finance/R-cran-TTR \	15	RUN_DEPENDS= R-cran-TTR>0:${PORTSDIR}/finance/R-cran-TTR \
16	R-cran-forecast>0:${PORTSDIR}/math/R-cran-forecast	16	R-cran-forecast>0:${PORTSDIR}/math/R-cran-forecast
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 12-18 COMMENT= Extended Model Formulas Link Here

(-)b/math/R-cran-Formula/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 13-19 COMMENT= Kalman filter and smoothers for exponential family state space models Link Here

(-)b/math/R-cran-KFAS/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 13-19 COMMENT= Functions for Learning Bayesian Inference Link Here

(-)b/math/R-cran-LearnBayes/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 16-22 RUN_DEPENDS= R-cran-coda>0.11.3:${PORTSDIR}/math/R-cran-coda Link Here

(-)b/math/R-cran-MCMCpack/Makefile (-2 / +1 lines)
16		16
17	# Actually required 4.0 or later, but at least 4.2 in the FreeBSD ports tree	17	# Actually required 4.0 or later, but at least 4.2 in the FreeBSD ports tree
18	USE_GCC= 4.2+	18	USE_GCC= 4.2+
19	USE_R_MOD= yes	19	USES= cran:auto-plist
20	R_MOD_AUTOPLIST= yes
21		20
22	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 13-19 COMMENT= Hidden Markov Models simulations and estimations Link Here

(-)b/math/R-cran-RHmm/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${PORTVERSION} Link Here

(-)b/math/R-cran-RSvgDevice/Makefile (-2 / +1 lines)
10	MAINTAINER= dbn@FreeBSD.org	10	MAINTAINER= dbn@FreeBSD.org
11	COMMENT= A R SVG graphics device	11	COMMENT= A R SVG graphics device
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 14-20 LICENSE_COMB= dual Link Here

(-)b/math/R-cran-RcppArmadillo/Makefile (-2 / +1 lines)
14		14
15	RUN_DEPENDS= R-cran-Rcpp>=0.10.5:${PORTSDIR}/devel/R-cran-Rcpp	15	RUN_DEPENDS= R-cran-Rcpp>=0.10.5:${PORTSDIR}/devel/R-cran-Rcpp
16		16
17	USE_R_MOD= yes	17	USES= cran:auto-plist
18	R_MOD_AUTOPLIST= yes
19		18
20	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 17-24 COMMENT= Supplementary distributions and RNG for R Link Here

(-)b/math/R-cran-SuppDists/Makefile (-2 / +1 lines)
17	LICENSE= GPLv2	17	LICENSE= GPLv2
18		18
19	BENCHMARK_SCRIPT= R-benchmark-25.R	19	BENCHMARK_SCRIPT= R-benchmark-25.R
20	R_MOD_AUTOPLIST= yes	20	USES= cran:auto-plist
21	USE_R_MOD= yes
22	WRKSRC = ${WRKDIR}/${PORTNAME}	21	WRKSRC = ${WRKDIR}/${PORTNAME}
23		22
24	.if defined(MAINTAINER_MODE)	23	.if defined(MAINTAINER_MODE)

Lines 13-19 COMMENT= Everyone's Statistical Software Link Here

(-)b/math/R-cran-Zelig/Makefile (-2 / +1 lines)
13	BUILD_DEPENDS= R-cran-sandwich>=0:${PORTSDIR}/math/R-cran-sandwich	13	BUILD_DEPENDS= R-cran-sandwich>=0:${PORTSDIR}/math/R-cran-sandwich
14	RUN_DEPENDS= R-cran-sandwich>=0:${PORTSDIR}/math/R-cran-sandwich	14	RUN_DEPENDS= R-cran-sandwich>=0:${PORTSDIR}/math/R-cran-sandwich
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST=yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 12-18 COMMENT= Routines for Block Diagonal Symmetric matrices Link Here

(-)b/math/R-cran-bdsmatrix/Makefile (-2 / +1 lines)
12		12
13	LICENSE= LGPL20	13	LICENSE= LGPL20
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 12-18 COMMENT= Companion to Applied Regression for R Link Here

(-)b/math/R-cran-car/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${DISTVERSION} Link Here

(-)b/math/R-cran-coda/Makefile (-2 / +1 lines)
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= Output analysis and diagnostics for MCMC	11	COMMENT= Output analysis and diagnostics for MCMC
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 13-19 COMMENT= Delaunay Triangulation and Dirichlet (Voronoi) Tessellation Link Here

(-)b/math/R-cran-deldir/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 13-19 COMMENT= Generalized Dynamic Linear Modeler Link Here

(-)b/math/R-cran-dlmodeler/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3 BSD	13	LICENSE= GPLv2 GPLv3 BSD
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 20-26 RUN_DEPENDS= R-cran-tseries>0:${PORTSDIR}/finance/R-cran-tseries \ Link Here

(-)b/math/R-cran-forecast/Makefile (-2 / +1 lines)
20	R-cran-RcppArmadillo>=0.2.35:${PORTSDIR}/math/R-cran-RcppArmadillo \	20	R-cran-RcppArmadillo>=0.2.35:${PORTSDIR}/math/R-cran-RcppArmadillo \
21	R-cran-colorspace>0:${PORTSDIR}/graphics/R-cran-colorspace	21	R-cran-colorspace>0:${PORTSDIR}/graphics/R-cran-colorspace
22		22
23	USE_R_MOD= yes	23	USES= cran:auto-plist
24	R_MOD_AUTOPLIST= yes
25		24
26	.include <bsd.port.mk>	25	.include <bsd.port.mk>

Lines 13-19 COMMENT= Fractionally differenced ARIMA aka ARFIMA(p,d,q) models Link Here

(-)b/math/R-cran-fracdiff/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${DISTVERSION} Link Here

(-)b/math/R-cran-gpclib/Makefile (-2 / +1 lines)
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= General Polygon Clipping Library for R	11	COMMENT= General Polygon Clipping Library for R
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 12-18 COMMENT= General Smoothing Splines Link Here

(-)b/math/R-cran-gss/Makefile (-2 / +1 lines)
12	LICENSE= GPLv2 GPLv3	12	LICENSE= GPLv2 GPLv3
13	LICENSE_COMB= dual	13	LICENSE_COMB= dual
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 11-17 COMMENT= Arrange grobs in tables Link Here

(-)b/math/R-cran-gtable/Makefile (-2 / +1 lines)
11		11
12	LICENSE= GPLv2	12	LICENSE= GPLv2
13		13
14	USE_R_MOD= yes	14	USES= cran:auto-plist
15	R_MOD_AUTOPLIST= yes
16		15
17	.include <bsd.port.mk>	16	.include <bsd.port.mk>

Lines 12-19 COMMENT= R extension package for igraph Link Here

(-)b/math/R-cran-igraph/Makefile (-2 / +1 lines)
12	LICENSE= GPLv2 GPLv3	12	LICENSE= GPLv2 GPLv3
13	LICENSE_COMB= dual	13	LICENSE_COMB= dual
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.pre.mk>	17	.include <bsd.port.pre.mk>
19		18

Lines 10-16 DISTNAME= ${PORTNAME}_${PORTVERSION} Link Here

(-)b/math/R-cran-inline/Makefile (-2 / +1 lines)
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= Inline C, C++, Fortran function calls from R	11	COMMENT= Inline C, C++, Fortran function calls from R
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 12-18 COMMENT= Provides a range of axis labeling algorithms Link Here

(-)b/math/R-cran-labeling/Makefile (-2 / +1 lines)
12		12
13	LICENSE= MIT	13	LICENSE= MIT
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 12-18 COMMENT= Provides an infrastructure for the management of survey data Link Here

(-)b/math/R-cran-memisc/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1} Link Here

(-)b/math/R-cran-mvtnorm/Makefile (-2 / +1 lines)
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= Multivariate Normal and t Distributions	11	COMMENT= Multivariate Normal and t Distributions
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 12-18 COMMENT= R implementation of an algorithm for non-negative least squares Link Here

(-)b/math/R-cran-nnls/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${PORTVERSION} Link Here

(-)b/math/R-cran-outliers/Makefile (-2 / +1 lines)
10	MAINTAINER= ports@FreeBSD.org	10	MAINTAINER= ports@FreeBSD.org
11	COMMENT= Collection of some tests commonly used for identifying outliers	11	COMMENT= Collection of some tests commonly used for identifying outliers
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${PORTVERSION} Link Here

(-)b/math/R-cran-psych/Makefile (-2 / +1 lines)
10	MAINTAINER= drue@therub.org	10	MAINTAINER= drue@therub.org
11	COMMENT= Psych package for the R project	11	COMMENT= Psych package for the R project
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 13-19 COMMENT= Functions to solve Quadratic Programming Problems Link Here

(-)b/math/R-cran-quadprog/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 14-20 LICENSE= GPLv2 Link Here

(-)b/math/R-cran-sandwich/Makefile (-2 / +1 lines)
14		14
15	RUN_DEPENDS= R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo	15	RUN_DEPENDS= R-cran-zoo>0:${PORTSDIR}/math/R-cran-zoo
16		16
17	USE_R_MOD= yes	17	USES= cran:auto-plist
18	R_MOD_AUTOPLIST= yes
19		18
20	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${DISTVERSION} Link Here

(-)b/math/R-cran-sm/Makefile (-2 / +1 lines)
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= Smoothing methods for nonparametric regression and density estimation	11	COMMENT= Smoothing methods for nonparametric regression and density estimation
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 13-19 COMMENT= R Classes and Methods for Spatial Data Link Here

(-)b/math/R-cran-sp/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 17-23 RUN_DEPENDS= R-cran-sp>=0.9:${PORTSDIR}/math/R-cran-sp \ Link Here

(-)b/math/R-cran-spdep/Makefile (-2 / +1 lines)
17	R-cran-coda>0:${PORTSDIR}/math/R-cran-coda \	17	R-cran-coda>0:${PORTSDIR}/math/R-cran-coda \
18	R-cran-LearnBayes>0:${PORTSDIR}/math/R-cran-LearnBayes	18	R-cran-LearnBayes>0:${PORTSDIR}/math/R-cran-LearnBayes
19		19
20	USE_R_MOD= yes	20	USES= cran:auto-plist
21	R_MOD_AUTOPLIST= yes
22		21
23	.include <bsd.port.mk>	22	.include <bsd.port.mk>

Lines 13-20 COMMENT= A glm-like formula to define dynamic generalized linear models Link Here

(-)b/math/R-cran-sspir/Makefile (-2 / +1 lines)
13	RUN_DEPENDS= R-cran-mvtnorm>=0.9.96_11:${PORTSDIR}/math/R-cran-mvtnorm \	13	RUN_DEPENDS= R-cran-mvtnorm>=0.9.96_11:${PORTSDIR}/math/R-cran-mvtnorm \
14	R-cran-KFAS>=0.9.11_3:${PORTSDIR}/math/R-cran-KFAS	14	R-cran-KFAS>=0.9.11_3:${PORTSDIR}/math/R-cran-KFAS
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19		18
20	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 13-19 COMMENT= Stable Distribution Functions Link Here

(-)b/math/R-cran-stabledist/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 15-21 LICENSE_COMB= dual Link Here

(-)b/math/R-cran-xts/Makefile (-2 / +1 lines)
15		15
16	RUN_DEPENDS= R-cran-zoo>=1.7.10:${PORTSDIR}/math/R-cran-zoo	16	RUN_DEPENDS= R-cran-zoo>=1.7.10:${PORTSDIR}/math/R-cran-zoo
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 12-18 COMMENT= S3 Infrastructure for Regular and Irregular Time Series Link Here

(-)b/math/R-cran-zoo/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 16-22 RUN_DEPENDS= R-cran-RCurl>0:${PORTSDIR}/ftp/R-cran-RCurl \ Link Here

(-)b/net/R-cran-twitteR/Makefile (-2 / +1 lines)
16	R-cran-rjson>=0.2.12:${PORTSDIR}/converters/R-cran-rjson \	16	R-cran-rjson>=0.2.12:${PORTSDIR}/converters/R-cran-rjson \
17	R-cran-ROAuth>=0.9.3:${PORTSDIR}/security/R-cran-ROAuth	17	R-cran-ROAuth>=0.9.3:${PORTSDIR}/security/R-cran-ROAuth
18		18
19	USE_R_MOD= yes	19	USES= cran:auto-plist
20	R_MOD_AUTOPLIST= yes
21		20
22	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1} Link Here

(-)b/science/R-cran-AMORE/Makefile (-2 / +1 lines)
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= A MORE flexible neural network package	11	COMMENT= A MORE flexible neural network package
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 15-21 LICENSE_COMB= dual Link Here

(-)b/science/R-cran-DCluster/Makefile (-2 / +1 lines)
15		15
16	RUN_DEPENDS= R-cran-spdep>0:${PORTSDIR}/math/R-cran-spdep	16	RUN_DEPENDS= R-cran-spdep>0:${PORTSDIR}/math/R-cran-spdep
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 12-18 COMMENT= Package for statistical analysis in epidemiology Link Here

(-)b/science/R-cran-Epi/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1} Link Here

(-)b/science/R-cran-bayesm/Makefile (-2 / +1 lines)
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= Bayesian Inference for Marketing/Micro-econometrics	11	COMMENT= Bayesian Inference for Marketing/Micro-econometrics
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 12-18 COMMENT= Misc Functions of the Department of Statistics (e1071), TU Wien Link Here

(-)b/science/R-cran-e1071/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1} Link Here

(-)b/science/R-cran-eco/Makefile (-2 / +1 lines)
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= R Package for Ecological Inference in 2x2 Tables	11	COMMENT= R Package for Ecological Inference in 2x2 Tables
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 10-16 DISTNAME= ${PORTNAME}_${PORTVERSION} Link Here

(-)b/science/R-cran-epicalc/Makefile (-2 / +1 lines)
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= Epidemiological calculator	11	COMMENT= Epidemiological calculator
12		12
13	USE_R_MOD= yes	13	USES= cran:auto-plist
14	R_MOD_AUTOPLIST= yes
15		14
16	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 13-19 COMMENT= Support for simple parallel computing in R Link Here

(-)b/science/R-cran-snow/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 12-18 COMMENT= Self-Organizing Map Link Here

(-)b/science/R-cran-som/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv3	13	LICENSE= GPLv3
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 15-21 LICENSE= ART20 Link Here

(-)b/security/R-cran-ROAuth/Makefile (-2 / +1 lines)
15	RUN_DEPENDS= R-cran-RCurl>=1.6.4:${PORTSDIR}/ftp/R-cran-RCurl \	15	RUN_DEPENDS= R-cran-RCurl>=1.6.4:${PORTSDIR}/ftp/R-cran-RCurl \
16	R-cran-digest>0:${PORTSDIR}/security/R-cran-digest	16	R-cran-digest>0:${PORTSDIR}/security/R-cran-digest
17		17
18	USE_R_MOD= yes	18	USES= cran:auto-plist
19	R_MOD_AUTOPLIST= yes
20		19
21	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 12-18 COMMENT= Create cryptographic hash digests of R objects Link Here

(-)b/security/R-cran-digest/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 12-18 COMMENT= HTML exportation for R objects Link Here

(-)b/textproc/R-cran-R2HTML/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 12-19 COMMENT= Tools for parsing and generating XML Link Here

(-)b/textproc/R-cran-XML/Makefile (-2 / +1 lines)
12		12
13	LICENSE= BSD	13	LICENSE= BSD
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17	USE_GNOME= libxml2	16	USE_GNOME= libxml2
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 14-20 LICENSE= GPLv2 Link Here

(-)b/textproc/R-cran-stringr/Makefile (-2 / +1 lines)
14		14
15	RUN_DEPENDS= R-cran-plyr>0:${PORTSDIR}/devel/R-cran-plyr	15	RUN_DEPENDS= R-cran-plyr>0:${PORTSDIR}/devel/R-cran-plyr
16		16
17	USE_R_MOD= yes	17	USES= cran:auto-plist
18	R_MOD_AUTOPLIST= yes
19		18
20	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 13-19 COMMENT= Export tables to LaTeX or HTML Link Here

(-)b/textproc/R-cran-xtable/Makefile (-2 / +1 lines)
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 16-22 LICENSE_COMB= dual Link Here

(-)b/www/R-cran-RgoogleMaps/Makefile (-2 / +1 lines)
16	RUN_DEPENDS= R-cran-png>0:${PORTSDIR}/graphics/R-cran-png \	16	RUN_DEPENDS= R-cran-png>0:${PORTSDIR}/graphics/R-cran-png \
17	R-cran-RJSONIO>0:${PORTSDIR}/converters/R-cran-RJSONIO	17	R-cran-RJSONIO>0:${PORTSDIR}/converters/R-cran-RJSONIO
18		18
19	USE_R_MOD= yes	19	USES= cran:auto-plist
20	R_MOD_AUTOPLIST= yes
21		20
22	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 12-18 COMMENT= Workbook-style, web-based interface to R Link Here

(-)b/www/R-cran-Rpad/Makefile (-2 / +1 lines)
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USE_R_MOD= yes	15	USES= cran:auto-plist
16	R_MOD_AUTOPLIST= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 18-25 LICENSE_PERMS_NODE= auto-accept Link Here

(-)b/www/R-cran-httpuv/Makefile (-2 lines)
18	RUN_DEPENDS= R-cran-Rcpp>=0.10.2:${PORTSDIR}/devel/R-cran-Rcpp	18	RUN_DEPENDS= R-cran-Rcpp>=0.10.2:${PORTSDIR}/devel/R-cran-Rcpp
19		19
20	USE_GMAKE= yes	20	USE_GMAKE= yes
21	USE_R_MOD= yes
22	R_MOD_AUTOPLIST= yes
23		21
24	MAKE_ENV= MAKE=${GMAKE}	22	MAKE_ENV= MAKE=${GMAKE}
25		23

Lines 13-19 COMMENT= Tools for Scraping Data from HTML and XML Documents Link Here

(-)b/www/R-cran-scrapeR/Makefile (-2 / +1 lines)
13	RUN_DEPENDS= R-cran-XML>0:${PORTSDIR}/textproc/R-cran-XML \	13	RUN_DEPENDS= R-cran-XML>0:${PORTSDIR}/textproc/R-cran-XML \
14	R-cran-RCurl>0:${PORTSDIR}/ftp/R-cran-RCurl	14	R-cran-RCurl>0:${PORTSDIR}/ftp/R-cran-RCurl
15		15
16	USE_R_MOD= yes	16	USES= cran:auto-plist
17	R_MOD_AUTOPLIST= yes
18		17
19	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 17-23 RUN_DEPENDS= R-cran-httpuv>=1.2.0:${PORTSDIR}/www/R-cran-httpuv \ Link Here

(-)b/www/R-cran-shiny/Makefile (-2 / +1 lines)
17	R-cran-xtable>0:${PORTSDIR}/textproc/R-cran-xtable \	17	R-cran-xtable>0:${PORTSDIR}/textproc/R-cran-xtable \
18	R-cran-digest>0:${PORTSDIR}/security/R-cran-digest	18	R-cran-digest>0:${PORTSDIR}/security/R-cran-digest
19		19
20	USE_R_MOD= yes	20	USES= cran:auto-plist
21	R_MOD_AUTOPLIST= yes
22		21
23	.include <bsd.port.mk>	22	.include <bsd.port.mk>

Return to bug 184699

Lines 421-428 FreeBSD_MAINTAINER= portmgr@FreeBSD.org Link Here

(-)b/Mk/bsd.port.mk (-6 lines)
421	# Implies inclusion of bsd.python.mk. (Also see	421	# Implies inclusion of bsd.python.mk. (Also see
422	# that file for more information on USE_PYTHON_*	422	# that file for more information on USE_PYTHON_*
423	# and USE_PYDISTUTILS).	423	# and USE_PYDISTUTILS).
424	# USE_R_MOD - If set, this port uses the Comprehensive R Archive Network.
425	# See bsd.cran.mk for more details.
426	# USE_RUBY - If set, this port relies on the Ruby language.	424	# USE_RUBY - If set, this port relies on the Ruby language.
427	# Implies inclusion of bsd.ruby.mk. (Also see	425	# Implies inclusion of bsd.ruby.mk. (Also see
428	# that file for more information on USE_RUBY_*).	426	# that file for more information on USE_RUBY_*).
Lines 1427-1436 PKGCOMPATDIR?= ${LOCALBASE}/lib/compat/pkg Link Here
1427	.include "${PORTSDIR}/Mk/bsd.java.mk"	1425	.include "${PORTSDIR}/Mk/bsd.java.mk"
1428	.endif	1426	.endif
1429		1427
1430	.if defined(USE_R_MOD)
1431	.include "${PORTSDIR}/Mk/bsd.cran.mk"
1432	.endif
1433
1434	.if defined(USE_RUBY) \|\| defined(USE_LIBRUBY)	1428	.if defined(USE_RUBY) \|\| defined(USE_LIBRUBY)
1435	.include "${PORTSDIR}/Mk/bsd.ruby.mk"	1429	.include "${PORTSDIR}/Mk/bsd.ruby.mk"
1436	.endif	1430	.endif

Added Link Here

(-)b/Mk/Uses/cran.mk (+95 lines)
1	# $FreeBSD: head/Mk/bsd.cran.mk 335044 2013-11-27 18:56:43Z dbn $
2	#
3	# Use the Comprehensive R Archive Network
4	#
5	# MAINTAINER= wen@FreeBSD.org
6	#
7	# Feature: cran
8	# Usage: USES=cran or USES=cran:ARGS
9	# Valid ARGS: auto-plist
10	#
11	# auto-plist The pkg-plist can be automatically compiled
12
13	.if !defined(_INCLUDE_USES_CRAN_MK)
14	_INCLUDE_USES_CRAN_MK= yes
15
16	VALID_ARGS= auto-plist
17
18	MASTER_SITE_CRAN+= http://ftp.ctex.org/mirrors/CRAN/src/contrib/ \
19	http://cran.rakanu.com/src/contrib/ \
20	http://cran.ms.unimelb.edu.au/src/contrib/ \
21	http://mirror.its.dal.ca/cran/src/contrib/ \
22	http://mirrors.dotsrc.org/cran/src/contrib/ \
23	http://cran.univ-lyon1.fr/src/contrib/ \
24	http://ftp5.gwdg.de/pub/misc/cran/src/contrib/ \
25	http://cran.stat.unipd.it/src/contrib/ \
26	http://cran.md.tsukuba.ac.jp/src/contrib/ \
27	http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/ \
28	http://cran.cnr.berkeley.edu/src/contrib/
29	MASTER_SITE_CRAN_ARCHIVE+= ${MASTER_SITE_CRAN:S,$,Archive/${PORTNAME}/,}
30
31	MASTER_SITES?= ${MASTER_SITE_CRAN} ${MASTER_SITE_CRAN_ARCHIVE}
32
33	USE_FORTRAN= yes
34	BUILD_DEPENDS+= ${LOCALBASE}/bin/R:${PORTSDIR}/math/R
35	RUN_DEPENDS+= ${LOCALBASE}/bin/R:${PORTSDIR}/math/R
36
37	PKGNAMEPREFIX?= R-cran-
38
39	R_LIB_DIR= lib/R/library
40	R_MOD_DIR?= ${R_LIB_DIR}/${PORTNAME}
41	PLIST_SUB+= R_MOD_DIR=${R_MOD_DIR}
42	WRKSRC?= ${WRKDIR}/${PORTNAME}
43
44	NO_BUILD= yes
45	R_COMMAND= ${LOCALBASE}/bin/R
46
47	.if !target(regression-test)
48	R_POSTCMD_CHECK_OPTIONS?= --timings
49
50	.if !exists(${LOCALBASE}/bin/pdflatex)
51	R_POSTCMD_CHECK_OPTIONS+= --no-manual --no-rebuild-vignettes
52	.endif
53
54	.if defined(NO_STAGE)
55	check-makevars::
56	@${ECHO_MSG} "Makefile error: USE_R_MOD cannot be used with NO_STAGE"
57	@${FALSE}
58	.endif
59
60	regression-test: build
61	@cd ${WRKDIR} ; ${SETENV} ${MAKE_ENV} _R_CHECK_FORCE_SUGGESTS_=FALSE \
62	${R_COMMAND} ${R_PRECMD_CHECK_OPTIONS} CMD check \
63	${R_POSTCMD_CHECK_OPTIONS} ${PORTNAME}
64	.endif
65
66	.if !target(do-install)
67	R_POSTCMD_INSTALL_OPTIONS+= -l ${STAGEDIR}${PREFIX}/${R_LIB_DIR}
68	.if defined(NOPORTDATA)
69	R_POSTCMD_INSTALL_OPTIONS+= --no-data --no-demo
70	.else
71	R_POSTCMD_INSTALL_OPTIONS+= --install-tests
72	.endif
73
74	.if defined(NOPORTDOCS)
75	R_POSTCMD_INSTALL_OPTIONS+= --no-docs --no-html
76	.endif
77
78	do-install:
79	@${MKDIR} ${STAGEDIR}${PREFIX}/${R_LIB_DIR}
80	@cd ${WRKDIR} ; ${SETENV} ${MAKE_ENV} ${R_COMMAND} \
81	${R_PRECMD_INSTALL_OPTIONS} CMD INSTALL \
82	${R_POSTCMD_INSTALL_OPTIONS} ${PORTNAME}
83	.endif
84
85	.if ${cran_ARGS:Mauto-plist}
86	.if !target(post-install-script)
87	post-install-script:
88	@${FIND} -ds ${STAGEDIR}${PREFIX}/${R_MOD_DIR} \( -type f -or -type l \) -print \| \
89	${SED} -E -e 's,^${STAGEDIR}${PREFIX}/?,,' >> ${TMPPLIST}
90	@${FIND} -ds ${STAGEDIR}${PREFIX}/${R_MOD_DIR} -type d -print \| ${SED} -E -e \
91	's,^${STAGEDIR}${PREFIX}/?,@dirrm ,' >> ${TMPPLIST}
92	.endif
93	.endif
94
95	.endif #_INCLUDE_USES_CRAN_MK

Removed Link Here

(-)a/Mk/bsd.cran.mk (-85 lines)
1	# Date created: 2009-01-25
2	# Whom: Wen Heping <wenheping@gmail.com>
3	#
4	# $FreeBSD$
5	#
6
7	CRAN_Include_MAINTAINER= wen@FreeBSD.org
8
9	MASTER_SITE_CRAN+= http://ftp.ctex.org/mirrors/CRAN/src/contrib/ \
10	http://cran.rakanu.com/src/contrib/ \
11	http://cran.ms.unimelb.edu.au/src/contrib/ \
12	http://mirror.its.dal.ca/cran/src/contrib/ \
13	http://mirrors.dotsrc.org/cran/src/contrib/ \
14	http://cran.univ-lyon1.fr/src/contrib/ \
15	http://ftp5.gwdg.de/pub/misc/cran/src/contrib/ \
16	http://cran.stat.unipd.it/src/contrib/ \
17	http://cran.md.tsukuba.ac.jp/src/contrib/ \
18	http://mirrors.ibiblio.org/pub/mirrors/CRAN/src/contrib/ \
19	http://cran.cnr.berkeley.edu/src/contrib/
20	MASTER_SITE_CRAN_ARCHIVE+= ${MASTER_SITE_CRAN:S,$,Archive/${PORTNAME}/,}
21
22	MASTER_SITES?= ${MASTER_SITE_CRAN} ${MASTER_SITE_CRAN_ARCHIVE}
23
24	USE_FORTRAN= yes
25	BUILD_DEPENDS+= ${LOCALBASE}/bin/R:${PORTSDIR}/math/R
26	RUN_DEPENDS+= ${LOCALBASE}/bin/R:${PORTSDIR}/math/R
27
28	PKGNAMEPREFIX?= R-cran-
29
30	R_LIB_DIR= lib/R/library
31	R_MOD_DIR?= ${R_LIB_DIR}/${PORTNAME}
32	PLIST_SUB+= R_MOD_DIR=${R_MOD_DIR}
33	WRKSRC?= ${WRKDIR}/${PORTNAME}
34
35	NO_BUILD= yes
36	R_COMMAND= ${LOCALBASE}/bin/R
37
38	.if !target(regression-test)
39	R_POSTCMD_CHECK_OPTIONS?= --timings
40
41	.if !exists(${LOCALBASE}/bin/pdflatex)
42	R_POSTCMD_CHECK_OPTIONS+= --no-manual --no-rebuild-vignettes
43	.endif
44
45	.if defined(NO_STAGE)
46	check-makevars::
47	@${ECHO_MSG} "Makefile error: USE_R_MOD cannot be used with NO_STAGE"
48	@${FALSE}
49	.endif
50
51	regression-test: build
52	@cd ${WRKDIR} ; ${SETENV} ${MAKE_ENV} _R_CHECK_FORCE_SUGGESTS_=FALSE \
53	${R_COMMAND} ${R_PRECMD_CHECK_OPTIONS} CMD check \
54	${R_POSTCMD_CHECK_OPTIONS} ${PORTNAME}
55	.endif
56
57	.if !target(do-install)
58	R_POSTCMD_INSTALL_OPTIONS+= -l ${STAGEDIR}${PREFIX}/${R_LIB_DIR}
59	.if defined(NOPORTDATA)
60	R_POSTCMD_INSTALL_OPTIONS+= --no-data --no-demo
61	.else
62	R_POSTCMD_INSTALL_OPTIONS+= --install-tests
63	.endif
64
65	.if defined(NOPORTDOCS)
66	R_POSTCMD_INSTALL_OPTIONS+= --no-docs --no-html
67	.endif
68
69	do-install:
70	@${MKDIR} ${STAGEDIR}${PREFIX}/${R_LIB_DIR}
71	@cd ${WRKDIR} ; ${SETENV} ${MAKE_ENV} ${R_COMMAND} \
72	${R_PRECMD_INSTALL_OPTIONS} CMD INSTALL \
73	${R_POSTCMD_INSTALL_OPTIONS} ${PORTNAME}
74	.endif
75
76	.if defined(R_MOD_AUTOPLIST)
77	.if !target(post-install-script)
78	post-install-script:
79	@${FIND} -ds ${STAGEDIR}${PREFIX}/${R_MOD_DIR} \( -type f -or -type l \) -print \| \
80	${SED} -E -e 's,^${STAGEDIR}${PREFIX}/?,,' >> ${TMPPLIST}
81	@${FIND} -ds ${STAGEDIR}${PREFIX}/${R_MOD_DIR} -type d -print \| ${SED} -E -e \
82	's,^${STAGEDIR}${PREFIX}/?,@dirrm ,' >> ${TMPPLIST}
83	.endif
84	.endif
85