Attachment #143585 for bug #190850

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# $FreeBSD$

PORTNAME=	pandas
PORTVERSION=	0.14.0
PORTREVISION=	1
CATEGORIES=	math devel python
MASTER_SITES=	CHEESESHOP
PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

		${PYTHON_PKGNAMEPREFIX}dateutil>0:${PORTSDIR}/devel/py-dateutil \
		${PYTHON_PKGNAMEPREFIX}pytz>0:${PORTSDIR}/devel/py-pytz \
		${PYTHON_PKGNAMEPREFIX}sqlite3>0:${PORTSDIR}/databases/py-sqlite3
TEST_DEPENDS:=	${RUN_DEPENDS} \
		nosetests:${PORTSDIR}/devel/py-nose \
		cython:${PORTSDIR}/lang/cython \
		${PYTHON_PKGNAMEPREFIX}boto>0:${PORTSDIR}/devel/py-boto \

		${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib \
		${PYTHON_PKGNAMEPREFIX}numexpr>0:${PORTSDIR}/math/py-numexpr \
		${PYTHON_PKGNAMEPREFIX}scipy>0:${PORTSDIR}/science/py-scipy \
		${PYTHON_PKGNAMEPREFIX}openpyxl<2.0.0:${PORTSDIR}/textproc/py-openpyxl1 \
		${PYTHON_PKGNAMEPREFIX}xlrd>0:${PORTSDIR}/textproc/py-xlrd \
		${PYTHON_PKGNAMEPREFIX}xlwt>0:${PORTSDIR}/textproc/py-xlwt \
		${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:${PORTSDIR}/www/py-beautifulsoup \

# Note: we cannot include math/py-statsmodels in TEST_DEPENDS because it
# depends upon us for BUILD and RUN.

OPTIONS_DEFINE=		MPL SCIPY
OPTIONS_GROUP=		ACCEL STORAGE HTML EXCEL
OPTIONS_GROUP_ACCEL=	BTLNCK NUMEXPR
OPTIONS_GROUP_STORAGE=	BOTO TABLES
OPTIONS_GROUP_HTML=	LXML HTML5LIB
OPTIONS_GROUP_EXCEL=	OPENPYXL XLRD XLWT

MPL_DESC=	Support graphical plotting output via math/py-matplotlib
SCIPY_DESC=	Support various statistical functions via science/py-scipy
BTLNCK_DESC=	Accelerate certain NaN evals via math/py-bottleneck
NUMEXPR_DESC=	Accelerate certain numerical ops via math/py-numexpr
BOTO_DESC=	Support Amazon S3 storage via devel/py-boto
TABLES_DESC=	Support HDF5-based storage via devel/py-tables
LXML_DESC=	Parse HTML with devel/py-lxml and www/py-beautifulsoup
HTML5LIB_DESC=	Parse HTML with www/py-html5lib and www/py-beautifulsoup
OPENPYXL_DESC=	Read/write MS Excel 2007+ with textproc/py-openpyxl1
XLRD_DESC=	Read MS Excel with textproc/py-xlrd
XLWT_DESC=	Write MS Excel with textproc/py-xlwt
ACCEL_DESC=	Computation Acceleration Add-ons
STORAGE_DESC=	Data Storage Add-ons
HTML_DESC=	HTML Parsing Add-ons
EXCEL_DESC=	MS Excel I/O Add-ons

MPL_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib
SCIPY_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}scipy>0:${PORTSDIR}/science/py-scipy
BTLNCK_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}bottleneck>0:${PORTSDIR}/math/py-bottleneck
NUMEXPR_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}numexpr>0:${PORTSDIR}/math/py-numexpr
BOTO_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}boto>0:${PORTSDIR}/devel/py-boto
TABLES_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}tables>0:${PORTSDIR}/devel/py-tables
LXML_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}lxml>0:${PORTSDIR}/devel/py-lxml
HTML5LIB_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}html5lib>0:${PORTSDIR}/www/py-html5lib
OPENPYXL_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}openpyxl<2.0.0:${PORTSDIR}/textproc/py-openpyxl1
XLRD_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}xlrd>0:${PORTSDIR}/textproc/py-xlrd
XLWT_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}xlwt>0:${PORTSDIR}/textproc/py-xlwt

.include <bsd.port.options.mk>

.if ${PORT_OPTIONS:MLXML} || ${PORT_OPTIONS:MHTML5LIB}
RUN_DEPENDS+=	${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:${PORTSDIR}/www/py-beautifulsoup
.endif

SUB_FILES=	pkg-message

USE_PYTHON=		yes

		${PYTHON_CMD} ${PYSETUP} build_ext --inplace && \
		${PYTHON_CMD} -c 'import pandas.util.print_versions as pv; pv.show_versions()' && \
		( ${SETENV} ${NOSE_ENV} nosetests ${NOSE_ARGS} || ${TRUE} ) && \
		${PYTHON_CMD} ${SCRIPTDIR}/print_skipped.py ${XUNITFILE} \
	)

.include <bsd.port.mk>

Lines 1-2 Link Here

(-)math/py-pandas/distinfo (-2 / +2 lines)
1	SHA256 (pandas-0.13.1.tar.gz) = 6813746caa796550969ed98069f16627f070f6d8d60686cfb3fa0e66c2e0312b	1	SHA256 (pandas-0.14.0.tar.gz) = f7997debca756c4dd5ccdf5a010dfe3d1c7dac98ee706b715d994cf7c9d35528
2	SIZE (pandas-0.13.1.tar.gz) = 6096890	2	SIZE (pandas-0.14.0.tar.gz) = 6526846




===
If you wish, install math/py-statsmodels to enable parts of pandas.stats.
recommended to get the most out of pandas. Install them as needed.

Library		Port origin		Purpose
-------		-----------		-------
boto		devel/py-boto		access Amazon S3
pytables	devel/py-tables		necessary for HDF5-based storage
bottleneck	math/py-bottleneck	accelerate certain NaN evals
matplotlib	math/py-matplotlib	plotting
numexpr		math/py-numexpr		accelerate certain numerical ops
statsmodels	math/py-statsmodels	enables parts of pandas.stats
scipy		science/py-scipy	misc. statistical functions
openpyxl	textproc/py-openpyxl	Excel 2007+ I/O
xlrd		textproc/py-xlrd	Excel input
xlwt		textproc/py-xlwt	Excel output

To use the HTML table parsing capabilities that were introduced in
pandas 0.12.0, you will need to install

beautifulsoup	www/py-beautifulsoup

and one or the other or both of

html5lib	www/py-html5lib
lxml		devel/py-lxml

Please read the pandas documentation before deciding:

http://pandas.pydata.org/pandas-docs/stable/gotchas.html#html-gotchas
===




#!/usr/bin/env python

import sys
import math
import xml.etree.ElementTree as et


def parse_results(filename):
    tree = et.parse(filename)
    root = tree.getroot()
    skipped = []

    current_class = old_class = ''
    i = 1
    assert i - 1 == len(skipped)
    for el in root.findall('testcase'):
        cn = el.attrib['classname']
        for sk in el.findall('skipped'):
            old_class = current_class
            current_class = cn
            name = '{classname}.{name}'.format(classname=current_class,
                                               name=el.attrib['name'])
            msg = sk.attrib['message']
            out = ''
            if old_class != current_class:
                ndigits = int(math.log(i, 10) + 1)
                out += ('-' * (len(name + msg) + 4 + ndigits) + '\n') # 4 for : + space + # + space
            out += '#{i} {name}: {msg}'.format(i=i, name=name, msg=msg)
            skipped.append(out)
            i += 1
            assert i - 1 == len(skipped)
    assert i - 1 == len(skipped)
    assert len(skipped) == int(root.attrib['skip'])
    return '\n'.join(skipped)


def main(args):
    print('SKIPPED TESTS:')
    print(parse_results(args.filename))
    return 0


def parse_args():
    import argparse
    parser = argparse.ArgumentParser()
    parser.add_argument('filename', help='XUnit file to parse')
    return parser.parse_args()


if __name__ == '__main__':
    sys.exit(main(parse_args()))




#!/usr/bin/env python

import sys
import math
import xml.etree.ElementTree as et


def parse_results(filename):
    tree = et.parse(filename)
    root = tree.getroot()
    skipped = []

    current_class = old_class = ''
    i = 1
    assert i - 1 == len(skipped)
    for el in root.findall('testcase'):
        cn = el.attrib['classname']
        for sk in el.findall('skipped'):
            old_class = current_class
            current_class = cn
            name = '{classname}.{name}'.format(classname=current_class,
                                               name=el.attrib['name'])
            msg = sk.attrib['message']
            out = ''
            if old_class != current_class:
                ndigits = int(math.log(i, 10) + 1)
                out += ('-' * (len(name + msg) + 4 + ndigits) + '\n') # 4 for : + space + # + space
            out += '#{i} {name}: {msg}'.format(i=i, name=name, msg=msg)
            skipped.append(out)
            i += 1
            assert i - 1 == len(skipped)
    assert i - 1 == len(skipped)
    assert len(skipped) == int(root.attrib['skip'])
    return '\n'.join(skipped)


def main(args):
    print('SKIPPED TESTS:')
    print(parse_results(args.filename))
    return 0


def parse_args():
    import argparse
    parser = argparse.ArgumentParser()
    parser.add_argument('filename', help='XUnit file to parse')
    return parser.parse_args()


if __name__ == '__main__':
    sys.exit(main(parse_args()))

Return to bug 190850

Lines 1-8 Link Here

(-)math/py-pandas/Makefile (-5 / +45 lines)
1	# $FreeBSD$	1	# $FreeBSD$
2		2
3	PORTNAME= pandas	3	PORTNAME= pandas
4	PORTVERSION= 0.13.1	4	PORTVERSION= 0.14.0
5	PORTREVISION= 1
6	CATEGORIES= math devel python	5	CATEGORIES= math devel python
7	MASTER_SITES= CHEESESHOP	6	MASTER_SITES= CHEESESHOP
8	PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}	7	PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
Lines 17-23 Link Here
17	${PYTHON_PKGNAMEPREFIX}dateutil>0:${PORTSDIR}/devel/py-dateutil \	16	${PYTHON_PKGNAMEPREFIX}dateutil>0:${PORTSDIR}/devel/py-dateutil \
18	${PYTHON_PKGNAMEPREFIX}pytz>0:${PORTSDIR}/devel/py-pytz \	17	${PYTHON_PKGNAMEPREFIX}pytz>0:${PORTSDIR}/devel/py-pytz \
19	${PYTHON_PKGNAMEPREFIX}sqlite3>0:${PORTSDIR}/databases/py-sqlite3	18	${PYTHON_PKGNAMEPREFIX}sqlite3>0:${PORTSDIR}/databases/py-sqlite3
20	TEST_DEPENDS= ${RUN_DEPENDS} \	19	TEST_DEPENDS:= ${RUN_DEPENDS} \
21	nosetests:${PORTSDIR}/devel/py-nose \	20	nosetests:${PORTSDIR}/devel/py-nose \
22	cython:${PORTSDIR}/lang/cython \	21	cython:${PORTSDIR}/lang/cython \
23	${PYTHON_PKGNAMEPREFIX}boto>0:${PORTSDIR}/devel/py-boto \	22	${PYTHON_PKGNAMEPREFIX}boto>0:${PORTSDIR}/devel/py-boto \
Lines 27-33 Link Here
27	${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib \	26	${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib \
28	${PYTHON_PKGNAMEPREFIX}numexpr>0:${PORTSDIR}/math/py-numexpr \	27	${PYTHON_PKGNAMEPREFIX}numexpr>0:${PORTSDIR}/math/py-numexpr \
29	${PYTHON_PKGNAMEPREFIX}scipy>0:${PORTSDIR}/science/py-scipy \	28	${PYTHON_PKGNAMEPREFIX}scipy>0:${PORTSDIR}/science/py-scipy \
30	${PYTHON_PKGNAMEPREFIX}openpyxl>0:${PORTSDIR}/textproc/py-openpyxl \	29	${PYTHON_PKGNAMEPREFIX}openpyxl<2.0.0:${PORTSDIR}/textproc/py-openpyxl1 \
31	${PYTHON_PKGNAMEPREFIX}xlrd>0:${PORTSDIR}/textproc/py-xlrd \	30	${PYTHON_PKGNAMEPREFIX}xlrd>0:${PORTSDIR}/textproc/py-xlrd \
32	${PYTHON_PKGNAMEPREFIX}xlwt>0:${PORTSDIR}/textproc/py-xlwt \	31	${PYTHON_PKGNAMEPREFIX}xlwt>0:${PORTSDIR}/textproc/py-xlwt \
33	${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:${PORTSDIR}/www/py-beautifulsoup \	32	${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:${PORTSDIR}/www/py-beautifulsoup \
Lines 35-40 Link Here
35	# Note: we cannot include math/py-statsmodels in TEST_DEPENDS because it	34	# Note: we cannot include math/py-statsmodels in TEST_DEPENDS because it
36	# depends upon us for BUILD and RUN.	35	# depends upon us for BUILD and RUN.
37		36
		37	OPTIONS_DEFINE= MPL SCIPY
		38	OPTIONS_GROUP= ACCEL STORAGE HTML EXCEL
		39	OPTIONS_GROUP_ACCEL= BTLNCK NUMEXPR
		40	OPTIONS_GROUP_STORAGE= BOTO TABLES
		41	OPTIONS_GROUP_HTML= LXML HTML5LIB
		42	OPTIONS_GROUP_EXCEL= OPENPYXL XLRD XLWT
		43
		44	MPL_DESC= Support graphical plotting output via math/py-matplotlib
		45	SCIPY_DESC= Support various statistical functions via science/py-scipy
		46	BTLNCK_DESC= Accelerate certain NaN evals via math/py-bottleneck
		47	NUMEXPR_DESC= Accelerate certain numerical ops via math/py-numexpr
		48	BOTO_DESC= Support Amazon S3 storage via devel/py-boto
		49	TABLES_DESC= Support HDF5-based storage via devel/py-tables
		50	LXML_DESC= Parse HTML with devel/py-lxml and www/py-beautifulsoup
		51	HTML5LIB_DESC= Parse HTML with www/py-html5lib and www/py-beautifulsoup
		52	OPENPYXL_DESC= Read/write MS Excel 2007+ with textproc/py-openpyxl1
		53	XLRD_DESC= Read MS Excel with textproc/py-xlrd
		54	XLWT_DESC= Write MS Excel with textproc/py-xlwt
		55	ACCEL_DESC= Computation Acceleration Add-ons
		56	STORAGE_DESC= Data Storage Add-ons
		57	HTML_DESC= HTML Parsing Add-ons
		58	EXCEL_DESC= MS Excel I/O Add-ons
		59
		60	MPL_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib
		61	SCIPY_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}scipy>0:${PORTSDIR}/science/py-scipy
		62	BTLNCK_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}bottleneck>0:${PORTSDIR}/math/py-bottleneck
		63	NUMEXPR_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numexpr>0:${PORTSDIR}/math/py-numexpr
		64	BOTO_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}boto>0:${PORTSDIR}/devel/py-boto
		65	TABLES_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}tables>0:${PORTSDIR}/devel/py-tables
		66	LXML_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>0:${PORTSDIR}/devel/py-lxml
		67	HTML5LIB_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}html5lib>0:${PORTSDIR}/www/py-html5lib
		68	OPENPYXL_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}openpyxl<2.0.0:${PORTSDIR}/textproc/py-openpyxl1
		69	XLRD_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xlrd>0:${PORTSDIR}/textproc/py-xlrd
		70	XLWT_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xlwt>0:${PORTSDIR}/textproc/py-xlwt
		71
		72	.include <bsd.port.options.mk>
		73
		74	.if ${PORT_OPTIONS:MLXML} \|\| ${PORT_OPTIONS:MHTML5LIB}
		75	RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}beautifulsoup>0:${PORTSDIR}/www/py-beautifulsoup
		76	.endif
		77
38	SUB_FILES= pkg-message	78	SUB_FILES= pkg-message
39		79
40	USE_PYTHON= yes	80	USE_PYTHON= yes
Lines 54-60 Link Here
54	${PYTHON_CMD} ${PYSETUP} build_ext --inplace && \	94	${PYTHON_CMD} ${PYSETUP} build_ext --inplace && \
55	${PYTHON_CMD} -c 'import pandas.util.print_versions as pv; pv.show_versions()' && \	95	${PYTHON_CMD} -c 'import pandas.util.print_versions as pv; pv.show_versions()' && \
56	( ${SETENV} ${NOSE_ENV} nosetests ${NOSE_ARGS} \|\| ${TRUE} ) && \	96	( ${SETENV} ${NOSE_ENV} nosetests ${NOSE_ARGS} \|\| ${TRUE} ) && \
57	${PYTHON_CMD} ${SCRIPTDIR}/print_skipped.py ${XUNITFILE}	97	${PYTHON_CMD} ${SCRIPTDIR}/print_skipped.py ${XUNITFILE} \
58	)	98	)
59		99
60	.include <bsd.port.mk>	100	.include <bsd.port.mk>

Lines 1-31 Link Here

(-)math/py-pandas/files/pkg-message.in (-29 / +1 lines)
1	===	1	===
2	Note that the following ports are not strict dependencies but are highly	2	If you wish, install math/py-statsmodels to enable parts of pandas.stats.
3	recommended to get the most out of pandas. Install them as needed.
4
5	Library Port origin Purpose
6	------- ----------- -------
7	boto devel/py-boto access Amazon S3
8	pytables devel/py-tables necessary for HDF5-based storage
9	bottleneck math/py-bottleneck accelerate certain NaN evals
10	matplotlib math/py-matplotlib plotting
11	numexpr math/py-numexpr accelerate certain numerical ops
12	statsmodels math/py-statsmodels enables parts of pandas.stats
13	scipy science/py-scipy misc. statistical functions
14	openpyxl textproc/py-openpyxl Excel 2007+ I/O
15	xlrd textproc/py-xlrd Excel input
16	xlwt textproc/py-xlwt Excel output
17
18	To use the HTML table parsing capabilities that were introduced in
19	pandas 0.12.0, you will need to install
20
21	beautifulsoup www/py-beautifulsoup
22
23	and one or the other or both of
24
25	html5lib www/py-html5lib
26	lxml devel/py-lxml
27
28	Please read the pandas documentation before deciding:
29
30	http://pandas.pydata.org/pandas-docs/stable/gotchas.html#html-gotchas
31	===	3	===

Lines 1-51 Link Here

(-)math/py-pandas/files/print_skipped.py (-51 lines)
1	#!/usr/bin/env python
2
3	import sys
4	import math
5	import xml.etree.ElementTree as et
6
7
8	def parse_results(filename):
9	tree = et.parse(filename)
10	root = tree.getroot()
11	skipped = []
12
13	current_class = old_class = ''
14	i = 1
15	assert i - 1 == len(skipped)
16	for el in root.findall('testcase'):
17	cn = el.attrib['classname']
18	for sk in el.findall('skipped'):
19	old_class = current_class
20	current_class = cn
21	name = '{classname}.{name}'.format(classname=current_class,
22	name=el.attrib['name'])
23	msg = sk.attrib['message']
24	out = ''
25	if old_class != current_class:
26	ndigits = int(math.log(i, 10) + 1)
27	out += ('-' * (len(name + msg) + 4 + ndigits) + '\n') # 4 for : + space + # + space
28	out += '#{i} {name}: {msg}'.format(i=i, name=name, msg=msg)
29	skipped.append(out)
30	i += 1
31	assert i - 1 == len(skipped)
32	assert i - 1 == len(skipped)
33	assert len(skipped) == int(root.attrib['skip'])
34	return '\n'.join(skipped)
35
36
37	def main(args):
38	print('SKIPPED TESTS:')
39	print(parse_results(args.filename))
40	return 0
41
42
43	def parse_args():
44	import argparse
45	parser = argparse.ArgumentParser()
46	parser.add_argument('filename', help='XUnit file to parse')
47	return parser.parse_args()
48
49
50	if __name__ == '__main__':
51	sys.exit(main(parse_args()))

Line 0 Link Here

(-)math/py-pandas/scripts/print_skipped.py (+51 lines)
	1	#!/usr/bin/env python
	2
	3	import sys
	4	import math
	5	import xml.etree.ElementTree as et
	6
	7
	8	def parse_results(filename):
	9	tree = et.parse(filename)
	10	root = tree.getroot()
	11	skipped = []
	12
	13	current_class = old_class = ''
	14	i = 1
	15	assert i - 1 == len(skipped)
	16	for el in root.findall('testcase'):
	17	cn = el.attrib['classname']
	18	for sk in el.findall('skipped'):
	19	old_class = current_class
	20	current_class = cn
	21	name = '{classname}.{name}'.format(classname=current_class,
	22	name=el.attrib['name'])
	23	msg = sk.attrib['message']
	24	out = ''
	25	if old_class != current_class:
	26	ndigits = int(math.log(i, 10) + 1)
	27	out += ('-' * (len(name + msg) + 4 + ndigits) + '\n') # 4 for : + space + # + space
	28	out += '#{i} {name}: {msg}'.format(i=i, name=name, msg=msg)
	29	skipped.append(out)
	30	i += 1
	31	assert i - 1 == len(skipped)
	32	assert i - 1 == len(skipped)
	33	assert len(skipped) == int(root.attrib['skip'])
	34	return '\n'.join(skipped)
	35
	36
	37	def main(args):
	38	print('SKIPPED TESTS:')
	39	print(parse_results(args.filename))
	40	return 0
	41
	42
	43	def parse_args():
	44	import argparse
	45	parser = argparse.ArgumentParser()
	46	parser.add_argument('filename', help='XUnit file to parse')
	47	return parser.parse_args()
	48
	49
	50	if __name__ == '__main__':
	51	sys.exit(main(parse_args()))