Attachment #151430 for bug #196260




# $FreeBSD$

PORTNAME=	slurm
PORTVERSION=	14.11.2
PORTREVISION=	4
CATEGORIES=	sysutils
MASTER_SITES=	http://www.schedmd.com/download/archive/ \
		http://www.schedmd.com/download/latest/ \

MAINTAINER=	jwbacon@tds.net
COMMENT=	Simple Linux Utility for Resource Management

LICENSE=	GPLv2

LIB_DEPENDS=	libsysinfo.so:${PORTSDIR}/devel/libsysinfo \
		libhwloc.so:${PORTSDIR}/devel/hwloc \

		libhdf5.so:${PORTSDIR}/science/hdf5

GNU_CONFIGURE=	yes
USES=		gmake libtool perl5 python tar:bzip2
USE_LDCONFIG=	yes
USES=		gmake libtool perl5 tar:bzip2
USE_PYTHON=	yes

OPTIONS_DEFINE=	DOCS MYSQL PGSQL GTK2


USE_RC_SUBR=	slurmctld slurmd
SUB_FILES+=	slurm.conf

DOCSDIR=	${PREFIX}/share/doc/${PORTNAME}-${PORTVERSION}
PLIST_SUB=	SLURM_VERSION=${PORTVERSION}

STRIP_CMD=	# NONE
CFLAGS+=	-I${WRKSRC}/slurm -I${LOCALBASE}/include
LDFLAGS+=	-L${LOCALBASE}/lib -lsysinfo -lkvm

post-install:

.include <bsd.port.options.mk>

.if ${PORT_OPTIONS:MMYSQL}
USE_MYSQL=	yes # Job accounting
PLIST_FILES+=	lib/slurm/accounting_storage_mysql.a \
		lib/slurm/accounting_storage_mysql.la \
		lib/slurm/accounting_storage_mysql.so \

.endif

.if ${PORT_OPTIONS:MPGSQL}
USES+=		pgsql # Job accounting
PLIST_FILES+=	lib/slurm/accounting_storage_pgsql.a \
		lib/slurm/accounting_storage_pgsql.la \
		lib/slurm/accounting_storage_pgsql.so \

# Note: Configure could not find pcre when building with no ports
# preinstalled on 9.1-RELEASE.  Worked fine on second try.
USE_GNOME=	glib20 gtk20	# sview
#PLIST_FILES+=	bin/sview
.endif

post-patch:

Lines 1-2 Link Here

(-)distinfo (-2 / +2 lines)
1	SHA256 (slurm-2.6.4.tar.bz2) = f44a9a80c502dba9809127dc2a04069fd7c87d6b1e10824fe254b2077f9adac8	1	SHA256 (slurm-14.11.2.tar.bz2) = 92459bcee4989133ccf3fe7d3e4d1b34ce39190269f99ad007108bb3a1c11989
2	SIZE (slurm-2.6.4.tar.bz2) = 5954130	2	SIZE (slurm-14.11.2.tar.bz2) = 6347846




--- configure.orig	2013-09-10 16:44:33.000000000 -0500
+++ configure	2013-11-14 10:23:02.000000000 -0600
@@ -21594,12 +21594,9 @@
 main ()
 {
 
-					int main()
-					{
 						MYSQL mysql;
 						(void) mysql_init(&mysql);
 						(void) mysql_close(&mysql);
-					}
 
   ;
   return 0;
@@ -21636,12 +21633,9 @@
 main ()
 {
 
-						int main()
-						{
 							MYSQL mysql;
 							(void) mysql_init(&mysql);
 							(void) mysql_close(&mysql);
-						}
 
   ;
   return 0;
@@ -21803,12 +21797,9 @@
 main ()
 {
 
-				int main()
-       	  			{
 					PGconn     *conn;
 					conn = PQconnectdb("dbname = postgres");
        					(void) PQfinish(conn);
-				}
 
   ;
   return 0;




--- src/plugins/select/cons_res/dist_tasks.c.orig	2013-09-10 16:44:33.000000000 -0500
+++ src/plugins/select/cons_res/dist_tasks.c	2013-11-14 10:23:02.000000000 -0600
@@ -271,6 +271,30 @@
 	return SLURM_SUCCESS;
 }
 
+// These were nested below, which is not legal in standard C
+
+	/* qsort compare function for ascending int list */
+	int _cmp_int_ascend (const void *a, const void *b)
+	{
+		return (*(int*)a - *(int*)b);
+	}
+
+	/* qsort compare function for descending int list */
+	int _cmp_int_descend (const void *a, const void *b)
+	{
+		return (*(int*)b - *(int*)a);
+	}
+
+	int* sockets_cpu_cnt;
+
+	/* qsort compare function for board combination socket
+	 * list */
+	int _cmp_sock (const void *a, const void *b)
+	{
+		 return (sockets_cpu_cnt[*(int*)b] -
+				 sockets_cpu_cnt[*(int*)a]);
+	}
+
 /* sync up core bitmap with new CPU count using a best-fit approach
  * on the available resources on each node
  *
@@ -298,7 +322,6 @@
 	int elig_idx, comb_brd_idx, sock_list_idx, comb_min, board_num;
 	int* boards_cpu_cnt;
 	int* sort_brds_cpu_cnt;
-	int* sockets_cpu_cnt;
 	int* board_combs;
 	int* socket_list;
 	int* elig_brd_combs;
@@ -316,26 +339,6 @@
 	uint64_t ncomb_brd;
 	bool sufficient,best_fit_sufficient;
 
-	/* qsort compare function for ascending int list */
-	int _cmp_int_ascend (const void *a, const void *b)
-	{
-		return (*(int*)a - *(int*)b);
-	}
-
-	/* qsort compare function for descending int list */
-	int _cmp_int_descend (const void *a, const void *b)
-	{
-		return (*(int*)b - *(int*)a);
-	}
-
-	/* qsort compare function for board combination socket
-	 * list */
-	int _cmp_sock (const void *a, const void *b)
-	{
-		 return (sockets_cpu_cnt[*(int*)b] -
-				 sockets_cpu_cnt[*(int*)a]);
-	}
-
 	if (!job_res)
 		return;
 




--- src/plugins/task/cgroup/task_cgroup_cpuset.c.orig	2013-11-14 10:56:33.000000000 -0600
+++ src/plugins/task/cgroup/task_cgroup_cpuset.c	2013-11-14 11:10:51.000000000 -0600
@@ -59,7 +59,12 @@
 
 #ifdef HAVE_HWLOC
 #include <hwloc.h>
+#if !defined(__FreeBSD__)
 #include <hwloc/glibc-sched.h>
+#else
+// For cpuset
+#include <pthread_np.h>
+#endif
 
 # if HWLOC_API_VERSION <= 0x00010000
 /* After this version the cpuset structure and all it's functions
@@ -714,7 +719,7 @@
 	hwloc_obj_type_t req_hwtype;
 
 	size_t tssize;
-	cpu_set_t ts;
+	cpuset_t ts;
 
 	bind_type = job->cpu_bind_type ;
 	if (conf->task_plugin_param & CPU_BIND_VERBOSE ||
@@ -900,7 +905,7 @@
 
 		hwloc_bitmap_asprintf(&str, cpuset);
 
-		tssize = sizeof(cpu_set_t);
+		tssize = sizeof(cpuset_t);
 		if (hwloc_cpuset_to_glibc_sched_affinity(topology,cpuset,
 							 &ts,tssize) == 0) {
 			fstatus = SLURM_SUCCESS;

Lines 1-9 Link Here

(-)pkg-descr (-4 / +4 lines)
1	SLURM is an open-source resource manager designed for *nix clusters of all	1	Slurm is an open-source workload manager designed for *nux clusters of all
2	sizes. It provides three key functions. First it allocates exclusive and/or	2	sizes. It provides three key functions. First it allocates exclusive and/or
3	non-exclusive access to resources (computer nodes) to users for some duration	3	non-exclusive access to resources (computer nodes) to users for some duration of
4	of time so they can perform work. Second, it provides a framework for starting,	4	time so they can perform work. Second, it provides a framework for starting,
5	executing, and monitoring work (typically a parallel job) on a set of allocated	5	executing, and monitoring work (typically a parallel job) on a set of allocated
6	nodes. Finally, it arbitrates contention for resources by managing a queue of	6	nodes. Finally, it arbitrates contention for resources by managing a queue of
7	pending work.	7	pending work.
8		8
9	WWW: https://computing.llnl.gov/linux/slurm/	9	WWW: http://slurm.schedmd.com/




include/slurm/slurm.h
include/slurm/slurm_errno.h
include/slurm/slurmdb.h
include/slurm/smd_ns.h
include/slurm/spank.h
lib/libpmi.a
lib/libpmi.so

lib/libpmi.so.0.0.0
lib/libslurm.a
lib/libslurm.so
lib/libslurm.so.28
lib/libslurm.so.28.0.0
lib/libslurmdb.a
lib/libslurmdb.so
lib/libslurmdb.so.28
lib/libslurmdb.so.28.0.0
lib/slurm/accounting_storage_filetxt.a
lib/slurm/accounting_storage_filetxt.so
lib/slurm/accounting_storage_none.a

lib/slurm/checkpoint_none.so
lib/slurm/checkpoint_ompi.a
lib/slurm/checkpoint_ompi.so
lib/slurm/core_spec_cray.a
lib/slurm/core_spec_cray.so
lib/slurm/core_spec_none.a
lib/slurm/core_spec_none.so
lib/slurm/crypto_munge.a
lib/slurm/crypto_munge.so
lib/slurm/crypto_openssl.a

lib/slurm/gres_mic.so
lib/slurm/gres_nic.a
lib/slurm/gres_nic.so
lib/slurm/job_container_cncu.a
lib/slurm/job_container_cncu.so
lib/slurm/job_container_none.a
lib/slurm/job_container_none.so
lib/slurm/job_submit_all_partitions.a
lib/slurm/job_submit_all_partitions.so
lib/slurm/job_submit_cnode.a
lib/slurm/job_submit_cnode.so
lib/slurm/job_submit_cray.a
lib/slurm/job_submit_cray.so
lib/slurm/job_submit_defaults.a
lib/slurm/job_submit_defaults.so
lib/slurm/job_submit_logging.a

lib/slurm/job_submit_pbs.so
lib/slurm/job_submit_require_timelimit.a
lib/slurm/job_submit_require_timelimit.so
lib/slurm/job_submit_throttle.a
lib/slurm/job_submit_throttle.so
lib/slurm/jobacct_gather_aix.a
lib/slurm/jobacct_gather_aix.so
lib/slurm/jobacct_gather_cgroup.a

lib/slurm/mpi_openmpi.so
lib/slurm/mpi_pmi2.a
lib/slurm/mpi_pmi2.so
lib/slurm/preempt_job_prio.a
lib/slurm/preempt_job_prio.so
lib/slurm/preempt_none.a
lib/slurm/preempt_none.so
lib/slurm/preempt_partition_prio.a

lib/slurm/proctrack_linuxproc.so
lib/slurm/proctrack_pgid.a
lib/slurm/proctrack_pgid.so
lib/slurm/route_default.a
lib/slurm/route_default.so
lib/slurm/route_topology.a
lib/slurm/route_topology.so
lib/slurm/sched_backfill.a
lib/slurm/sched_backfill.so
lib/slurm/sched_builtin.a

lib/slurm/sched_wiki.so
lib/slurm/sched_wiki2.a
lib/slurm/sched_wiki2.so
lib/slurm/select_alps.a
lib/slurm/select_alps.so
lib/slurm/select_cons_res.a
lib/slurm/select_cons_res.so
lib/slurm/select_cray.a

lib/slurm/select_linear.so
lib/slurm/select_serial.a
lib/slurm/select_serial.so
lib/slurm/slurmctld_nonstop.a
lib/slurm/slurmctld_nonstop.so
lib/slurm/spank_pbs.a
lib/slurm/spank_pbs.so
lib/slurm/src/sattach/sattach.wrapper.c
lib/slurm/src/srun/srun.wrapper.c
lib/slurm/switch_cray.a
lib/slurm/switch_cray.so
lib/slurm/switch_generic.a
lib/slurm/switch_generic.so
lib/slurm/switch_none.a
lib/slurm/switch_none.so
lib/slurm/task_cgroup.a
lib/slurm/task_cgroup.so
lib/slurm/task_cray.a
lib/slurm/task_cray.so
lib/slurm/task_none.a
lib/slurm/task_none.so
lib/slurm/topology_3d_torus.a

man/man3/slurm_free_ctl_conf.3.gz
man/man3/slurm_free_front_end_info_msg.3.gz
man/man3/slurm_free_job_alloc_info_response_msg.3.gz
man/man3/slurm_free_job_array_resp.3.gz
man/man3/slurm_free_job_info_msg.3.gz
man/man3/slurm_free_job_step_create_response_msg.3.gz
man/man3/slurm_free_job_step_info_response_msg.3.gz

man/man3/slurm_read_hostfile.3.gz
man/man3/slurm_reconfigure.3.gz
man/man3/slurm_requeue.3.gz
man/man3/slurm_requeue2.3.gz
man/man3/slurm_resume.3.gz
man/man3/slurm_resume2.3.gz
man/man3/slurm_set_debug_level.3.gz
man/man3/slurm_set_trigger.3.gz
man/man3/slurm_shutdown.3.gz

man/man3/slurm_strerror.3.gz
man/man3/slurm_submit_batch_job.3.gz
man/man3/slurm_suspend.3.gz
man/man3/slurm_suspend2.3.gz
man/man3/slurm_takeover.3.gz
man/man3/slurm_terminate_job.3.gz
man/man3/slurm_terminate_job_step.3.gz
man/man3/slurm_update_front_end.3.gz
man/man3/slurm_update_job.3.gz
man/man3/slurm_update_job2.3.gz
man/man3/slurm_update_node.3.gz
man/man3/slurm_update_partition.3.gz
man/man3/slurm_update_reservation.3.gz

man/man5/cray.conf.5.gz
man/man5/ext_sensors.conf.5.gz
man/man5/gres.conf.5.gz
man/man5/nonstop.conf.5.gz
man/man5/slurm.conf.5.gz
man/man5/slurmdbd.conf.5.gz
man/man5/topology.conf.5.gz

sbin/slurmd
sbin/slurmdbd
sbin/slurmstepd
%%DOCSDIR%%/html/Slurm_Entity.pdf
%%DOCSDIR%%/html/Slurm_Individual.pdf
%%DOCSDIR%%/html/accounting.html
%%DOCSDIR%%/html/accounting_storageplugins.html
%%DOCSDIR%%/html/acct_gather_energy_plugins.html
%%DOCSDIR%%/html/acct_gather_profile_plugins.html
%%DOCSDIR%%/html/add.html
%%DOCSDIR%%/html/allocation_pies.gif
%%DOCSDIR%%/html/api.html
%%DOCSDIR%%/html/arch.gif
%%DOCSDIR%%/html/authplugins.html
%%DOCSDIR%%/html/big_sys.html
%%DOCSDIR%%/html/bluegene.html
%%DOCSDIR%%/html/bull.jpg
%%DOCSDIR%%/html/cgroups.html
%%DOCSDIR%%/html/checkpoint_blcr.html
%%DOCSDIR%%/html/checkpoint_plugins.html
%%DOCSDIR%%/html/coding_style.pdf
%%DOCSDIR%%/html/configurator.easy.html
%%DOCSDIR%%/html/configurator.html
%%DOCSDIR%%/html/cons_res.html
%%DOCSDIR%%/html/cons_res_share.html
%%DOCSDIR%%/html/contributor.html
%%DOCSDIR%%/html/core_spec.html
%%DOCSDIR%%/html/core_spec_plugins.html
%%DOCSDIR%%/html/cpu_management.html
%%DOCSDIR%%/html/cray.html
%%DOCSDIR%%/html/cray_alps.html
%%DOCSDIR%%/html/crypto_plugins.html
%%DOCSDIR%%/html/disclaimer.html
%%DOCSDIR%%/html/dist_plane.html
%%DOCSDIR%%/html/documentation.html
%%DOCSDIR%%/html/download.html
%%DOCSDIR%%/html/dynalloc.html
%%DOCSDIR%%/html/elastic_computing.html
%%DOCSDIR%%/html/entities.gif
%%DOCSDIR%%/html/example_usage.gif
%%DOCSDIR%%/html/ext_sensorsplugins.html
%%DOCSDIR%%/html/fair_tree.html
%%DOCSDIR%%/html/faq.html
%%DOCSDIR%%/html/gang_scheduling.html
%%DOCSDIR%%/html/gres.html
%%DOCSDIR%%/html/gres_design.html
%%DOCSDIR%%/html/gres_plugins.html
%%DOCSDIR%%/html/hdf5_job_outline.png
%%DOCSDIR%%/html/hdf5_profile_user_guide.html
%%DOCSDIR%%/html/hdf5_task_attr.png
%%DOCSDIR%%/html/high_throughput.html
%%DOCSDIR%%/html/ibm-pe.html
%%DOCSDIR%%/html/ibm.html
%%DOCSDIR%%/html/ibm_pe_fig1.png
%%DOCSDIR%%/html/ibm_pe_fig2.png
%%DOCSDIR%%/html/job_array.html
%%DOCSDIR%%/html/job_container_plugins.html
%%DOCSDIR%%/html/job_exit_code.html
%%DOCSDIR%%/html/job_launch.html
%%DOCSDIR%%/html/job_submit_plugins.html
%%DOCSDIR%%/html/jobacct_gatherplugins.html
%%DOCSDIR%%/html/jobcompplugins.html
%%DOCSDIR%%/html/k_function.gif
%%DOCSDIR%%/html/launch_plugins.html
%%DOCSDIR%%/html/licenses.html
%%DOCSDIR%%/html/linuxstyles.css
%%DOCSDIR%%/html/lll.gif
%%DOCSDIR%%/html/mail.html
%%DOCSDIR%%/html/man_index.html
%%DOCSDIR%%/html/maui.html
%%DOCSDIR%%/html/mc_support.gif
%%DOCSDIR%%/html/mc_support.html
%%DOCSDIR%%/html/meetings.html
%%DOCSDIR%%/html/moab.html
%%DOCSDIR%%/html/mpi_guide.html
%%DOCSDIR%%/html/mpiplugins.html
%%DOCSDIR%%/html/multi_cluster.html
%%DOCSDIR%%/html/news.html
%%DOCSDIR%%/html/overview.html
%%DOCSDIR%%/html/plane_ex1.gif
%%DOCSDIR%%/html/plane_ex2.gif
%%DOCSDIR%%/html/plane_ex3.gif
%%DOCSDIR%%/html/plane_ex4.gif
%%DOCSDIR%%/html/plane_ex5.gif
%%DOCSDIR%%/html/plane_ex6.gif
%%DOCSDIR%%/html/plane_ex7.gif
%%DOCSDIR%%/html/platforms.html
%%DOCSDIR%%/html/plugins.html
%%DOCSDIR%%/html/power_save.html
%%DOCSDIR%%/html/preempt.html
%%DOCSDIR%%/html/preemption_plugins.html
%%DOCSDIR%%/html/priority_multifactor.html
%%DOCSDIR%%/html/priority_multifactor2.html
%%DOCSDIR%%/html/priority_multifactor3.html
%%DOCSDIR%%/html/priority_plugins.html
%%DOCSDIR%%/html/proctrack_plugins.html
%%DOCSDIR%%/html/programmer_guide.html
%%DOCSDIR%%/html/prolog_epilog.html
%%DOCSDIR%%/html/publications.html
%%DOCSDIR%%/html/qos.html
%%DOCSDIR%%/html/quickstart.html
%%DOCSDIR%%/html/quickstart_admin.html
%%DOCSDIR%%/html/reservations.html
%%DOCSDIR%%/html/resource_limits.html
%%DOCSDIR%%/html/rosetta.html
%%DOCSDIR%%/html/route_plugin.html
%%DOCSDIR%%/html/rpc.html
%%DOCSDIR%%/html/sched_config.html
%%DOCSDIR%%/html/schedmd.png
%%DOCSDIR%%/html/schedplugins.html
%%DOCSDIR%%/html/select_design.html
%%DOCSDIR%%/html/selectplugins.html
%%DOCSDIR%%/html/slurm.html
%%DOCSDIR%%/html/slurm_design.pdf
%%DOCSDIR%%/html/slurm_logo.png
%%DOCSDIR%%/html/slurm_ug_agenda.html
%%DOCSDIR%%/html/slurm_ug_cfp.html
%%DOCSDIR%%/html/slurm_ug_registration.html
%%DOCSDIR%%/html/slurmctld_plugstack.html
%%DOCSDIR%%/html/slurmstyles.css
%%DOCSDIR%%/html/sponsors.gif
%%DOCSDIR%%/html/sun_const.html
%%DOCSDIR%%/html/switchplugins.html
%%DOCSDIR%%/html/taskplugins.html
%%DOCSDIR%%/html/team.html
%%DOCSDIR%%/html/testimonials.html
%%DOCSDIR%%/html/topo_ex1.gif
%%DOCSDIR%%/html/topo_ex2.gif
%%DOCSDIR%%/html/topology.html
%%DOCSDIR%%/html/topology_plugin.html
%%DOCSDIR%%/html/troubleshoot.html
%%DOCSDIR%%/html/tutorial_intro_files.tar
%%DOCSDIR%%/html/tutorials.html
%%DOCSDIR%%/html/usage_pies.gif
%%DOCSDIR%%/html/wckey.html

Return to bug 196260

Lines 2-9 Link Here

(-)Makefile (-9 / +11 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= slurm	4	PORTNAME= slurm
5	PORTVERSION= 2.6.4	5	PORTVERSION= 14.11.2
6	PORTREVISION= 4
7	CATEGORIES= sysutils	6	CATEGORIES= sysutils
8	MASTER_SITES= http://www.schedmd.com/download/archive/ \	7	MASTER_SITES= http://www.schedmd.com/download/archive/ \
9	http://www.schedmd.com/download/latest/ \	8	http://www.schedmd.com/download/latest/ \
Lines 13-19 Link Here
13	MAINTAINER= jwbacon@tds.net	12	MAINTAINER= jwbacon@tds.net
14	COMMENT= Simple Linux Utility for Resource Management	13	COMMENT= Simple Linux Utility for Resource Management
15		14
16	LICENSE= GPLv1	15	LICENSE= GPLv2
17		16
18	LIB_DEPENDS= libsysinfo.so:${PORTSDIR}/devel/libsysinfo \	17	LIB_DEPENDS= libsysinfo.so:${PORTSDIR}/devel/libsysinfo \
19	libhwloc.so:${PORTSDIR}/devel/hwloc \	18	libhwloc.so:${PORTSDIR}/devel/hwloc \
Lines 22-29 Link Here
22	libhdf5.so:${PORTSDIR}/science/hdf5	21	libhdf5.so:${PORTSDIR}/science/hdf5
23		22
24	GNU_CONFIGURE= yes	23	GNU_CONFIGURE= yes
25	USES= gmake libtool perl5 python tar:bzip2
26	USE_LDCONFIG= yes	24	USE_LDCONFIG= yes
		25	USES= gmake libtool perl5 tar:bzip2
		26	USE_PYTHON= yes
27		27
28	OPTIONS_DEFINE= DOCS MYSQL PGSQL GTK2	28	OPTIONS_DEFINE= DOCS MYSQL PGSQL GTK2
29		29
Lines 33-41 Link Here
33	USE_RC_SUBR= slurmctld slurmd	33	USE_RC_SUBR= slurmctld slurmd
34	SUB_FILES+= slurm.conf	34	SUB_FILES+= slurm.conf
35		35
36	# This is a new and complex port. Allow debugging.	36	DOCSDIR= ${PREFIX}/share/doc/${PORTNAME}-${PORTVERSION}
		37	PLIST_SUB= SLURM_VERSION=${PORTVERSION}
		38
37	STRIP_CMD= # NONE	39	STRIP_CMD= # NONE
38	CFLAGS+= -I${LOCALBASE}/include -g -O1	40	CFLAGS+= -I${WRKSRC}/slurm -I${LOCALBASE}/include
39	LDFLAGS+= -L${LOCALBASE}/lib -lsysinfo -lkvm	41	LDFLAGS+= -L${LOCALBASE}/lib -lsysinfo -lkvm
40		42
41	post-install:	43	post-install:
Lines 44-50 Link Here
44	.include <bsd.port.options.mk>	46	.include <bsd.port.options.mk>
45		47
46	.if ${PORT_OPTIONS:MMYSQL}	48	.if ${PORT_OPTIONS:MMYSQL}
47	USE_MYSQL= yes # Job accounting	49	USE_MYSQL= yes # Job accounting
48	PLIST_FILES+= lib/slurm/accounting_storage_mysql.a \	50	PLIST_FILES+= lib/slurm/accounting_storage_mysql.a \
49	lib/slurm/accounting_storage_mysql.la \	51	lib/slurm/accounting_storage_mysql.la \
50	lib/slurm/accounting_storage_mysql.so \	52	lib/slurm/accounting_storage_mysql.so \
Lines 57-63 Link Here
57	.endif	59	.endif
58		60
59	.if ${PORT_OPTIONS:MPGSQL}	61	.if ${PORT_OPTIONS:MPGSQL}
60	USES+= pgsql # Job accounting	62	USES+= pgsql # Job accounting
61	PLIST_FILES+= lib/slurm/accounting_storage_pgsql.a \	63	PLIST_FILES+= lib/slurm/accounting_storage_pgsql.a \
62	lib/slurm/accounting_storage_pgsql.la \	64	lib/slurm/accounting_storage_pgsql.la \
63	lib/slurm/accounting_storage_pgsql.so \	65	lib/slurm/accounting_storage_pgsql.so \
Lines 73-79 Link Here
73	# Note: Configure could not find pcre when building with no ports	75	# Note: Configure could not find pcre when building with no ports
74	# preinstalled on 9.1-RELEASE. Worked fine on second try.	76	# preinstalled on 9.1-RELEASE. Worked fine on second try.
75	USE_GNOME= glib20 gtk20 # sview	77	USE_GNOME= glib20 gtk20 # sview
76	PLIST_FILES+= bin/sview	78	#PLIST_FILES+= bin/sview
77	.endif	79	.endif
78		80
79	post-patch:	81	post-patch:

Lines 1-41 Link Here

(-)files/patch-configure (-41 lines)
1	--- configure.orig 2013-09-10 16:44:33.000000000 -0500
2	+++ configure 2013-11-14 10:23:02.000000000 -0600
3	@@ -21594,12 +21594,9 @@
4	main ()
5	{
6
7	- int main()
8	- {
9	MYSQL mysql;
10	(void) mysql_init(&mysql);
11	(void) mysql_close(&mysql);
12	- }
13
14	;
15	return 0;
16	@@ -21636,12 +21633,9 @@
17	main ()
18	{
19
20	- int main()
21	- {
22	MYSQL mysql;
23	(void) mysql_init(&mysql);
24	(void) mysql_close(&mysql);
25	- }
26
27	;
28	return 0;
29	@@ -21803,12 +21797,9 @@
30	main ()
31	{
32
33	- int main()
34	- {
35	PGconn *conn;
36	conn = PQconnectdb("dbname = postgres");
37	(void) PQfinish(conn);
38	- }
39
40	;
41	return 0;

Lines 1-68 Link Here

(-)files/patch-src-plugins-select-cons_res-dist_tasks.c (-68 lines)
1	--- src/plugins/select/cons_res/dist_tasks.c.orig 2013-09-10 16:44:33.000000000 -0500
2	+++ src/plugins/select/cons_res/dist_tasks.c 2013-11-14 10:23:02.000000000 -0600
3	@@ -271,6 +271,30 @@
4	return SLURM_SUCCESS;
5	}
6
7	+// These were nested below, which is not legal in standard C
8	+
9	+ /* qsort compare function for ascending int list */
10	+ int _cmp_int_ascend (const void a, const void b)
11	+ {
12	+ return ((int)a - (int)b);
13	+ }
14	+
15	+ /* qsort compare function for descending int list */
16	+ int _cmp_int_descend (const void a, const void b)
17	+ {
18	+ return ((int)b - (int)a);
19	+ }
20	+
21	+ int* sockets_cpu_cnt;
22	+
23	+ /* qsort compare function for board combination socket
24	+ * list */
25	+ int _cmp_sock (const void a, const void b)
26	+ {
27	+ return (sockets_cpu_cnt[(int)b] -
28	+ sockets_cpu_cnt[(int)a]);
29	+ }
30	+
31	/* sync up core bitmap with new CPU count using a best-fit approach
32	* on the available resources on each node
33	*
34	@@ -298,7 +322,6 @@
35	int elig_idx, comb_brd_idx, sock_list_idx, comb_min, board_num;
36	int* boards_cpu_cnt;
37	int* sort_brds_cpu_cnt;
38	- int* sockets_cpu_cnt;
39	int* board_combs;
40	int* socket_list;
41	int* elig_brd_combs;
42	@@ -316,26 +339,6 @@
43	uint64_t ncomb_brd;
44	bool sufficient,best_fit_sufficient;
45
46	- /* qsort compare function for ascending int list */
47	- int _cmp_int_ascend (const void a, const void b)
48	- {
49	- return ((int)a - (int)b);
50	- }
51	-
52	- /* qsort compare function for descending int list */
53	- int _cmp_int_descend (const void a, const void b)
54	- {
55	- return ((int)b - (int)a);
56	- }
57	-
58	- /* qsort compare function for board combination socket
59	- * list */
60	- int _cmp_sock (const void a, const void b)
61	- {
62	- return (sockets_cpu_cnt[(int)b] -
63	- sockets_cpu_cnt[(int)a]);
64	- }
65	-
66	if (!job_res)
67	return;
68

Lines 1-33 Link Here

(-)files/patch-src-plugins-task-cgroup-task_cgroup_cpuset.c (-33 lines)
1	--- src/plugins/task/cgroup/task_cgroup_cpuset.c.orig 2013-11-14 10:56:33.000000000 -0600
2	+++ src/plugins/task/cgroup/task_cgroup_cpuset.c 2013-11-14 11:10:51.000000000 -0600
3	@@ -59,7 +59,12 @@
4
5	#ifdef HAVE_HWLOC
6	#include <hwloc.h>
7	+#if !defined(__FreeBSD__)
8	#include <hwloc/glibc-sched.h>
9	+#else
10	+// For cpuset
11	+#include <pthread_np.h>
12	+#endif
13
14	# if HWLOC_API_VERSION <= 0x00010000
15	/* After this version the cpuset structure and all it's functions
16	@@ -714,7 +719,7 @@
17	hwloc_obj_type_t req_hwtype;
18
19	size_t tssize;
20	- cpu_set_t ts;
21	+ cpuset_t ts;
22
23	bind_type = job->cpu_bind_type ;
24	if (conf->task_plugin_param & CPU_BIND_VERBOSE \|\|
25	@@ -900,7 +905,7 @@
26
27	hwloc_bitmap_asprintf(&str, cpuset);
28
29	- tssize = sizeof(cpu_set_t);
30	+ tssize = sizeof(cpuset_t);
31	if (hwloc_cpuset_to_glibc_sched_affinity(topology,cpuset,
32	&ts,tssize) == 0) {
33	fstatus = SLURM_SUCCESS;

Lines 22-27 Link Here

(-)pkg-plist (-125 / +171 lines)
22	include/slurm/slurm.h	22	include/slurm/slurm.h
23	include/slurm/slurm_errno.h	23	include/slurm/slurm_errno.h
24	include/slurm/slurmdb.h	24	include/slurm/slurmdb.h
		25	include/slurm/smd_ns.h
25	include/slurm/spank.h	26	include/slurm/spank.h
26	lib/libpmi.a	27	lib/libpmi.a
27	lib/libpmi.so	28	lib/libpmi.so
Lines 29-40 Link Here
29	lib/libpmi.so.0.0.0	30	lib/libpmi.so.0.0.0
30	lib/libslurm.a	31	lib/libslurm.a
31	lib/libslurm.so	32	lib/libslurm.so
32	lib/libslurm.so.26	33	lib/libslurm.so.28
33	lib/libslurm.so.26.0.0	34	lib/libslurm.so.28.0.0
34	lib/libslurmdb.a	35	lib/libslurmdb.a
35	lib/libslurmdb.so	36	lib/libslurmdb.so
36	lib/libslurmdb.so.26	37	lib/libslurmdb.so.28
37	lib/libslurmdb.so.26.0.0	38	lib/libslurmdb.so.28.0.0
38	lib/slurm/accounting_storage_filetxt.a	39	lib/slurm/accounting_storage_filetxt.a
39	lib/slurm/accounting_storage_filetxt.so	40	lib/slurm/accounting_storage_filetxt.so
40	lib/slurm/accounting_storage_none.a	41	lib/slurm/accounting_storage_none.a
Lines 63-68 Link Here
63	lib/slurm/checkpoint_none.so	64	lib/slurm/checkpoint_none.so
64	lib/slurm/checkpoint_ompi.a	65	lib/slurm/checkpoint_ompi.a
65	lib/slurm/checkpoint_ompi.so	66	lib/slurm/checkpoint_ompi.so
		67	lib/slurm/core_spec_cray.a
		68	lib/slurm/core_spec_cray.so
		69	lib/slurm/core_spec_none.a
		70	lib/slurm/core_spec_none.so
66	lib/slurm/crypto_munge.a	71	lib/slurm/crypto_munge.a
67	lib/slurm/crypto_munge.so	72	lib/slurm/crypto_munge.so
68	lib/slurm/crypto_openssl.a	73	lib/slurm/crypto_openssl.a
Lines 77-86 Link Here
77	lib/slurm/gres_mic.so	82	lib/slurm/gres_mic.so
78	lib/slurm/gres_nic.a	83	lib/slurm/gres_nic.a
79	lib/slurm/gres_nic.so	84	lib/slurm/gres_nic.so
		85	lib/slurm/job_container_cncu.a
		86	lib/slurm/job_container_cncu.so
		87	lib/slurm/job_container_none.a
		88	lib/slurm/job_container_none.so
80	lib/slurm/job_submit_all_partitions.a	89	lib/slurm/job_submit_all_partitions.a
81	lib/slurm/job_submit_all_partitions.so	90	lib/slurm/job_submit_all_partitions.so
82	lib/slurm/job_submit_cnode.a	91	lib/slurm/job_submit_cnode.a
83	lib/slurm/job_submit_cnode.so	92	lib/slurm/job_submit_cnode.so
		93	lib/slurm/job_submit_cray.a
		94	lib/slurm/job_submit_cray.so
84	lib/slurm/job_submit_defaults.a	95	lib/slurm/job_submit_defaults.a
85	lib/slurm/job_submit_defaults.so	96	lib/slurm/job_submit_defaults.so
86	lib/slurm/job_submit_logging.a	97	lib/slurm/job_submit_logging.a
Lines 91-96 Link Here
91	lib/slurm/job_submit_pbs.so	102	lib/slurm/job_submit_pbs.so
92	lib/slurm/job_submit_require_timelimit.a	103	lib/slurm/job_submit_require_timelimit.a
93	lib/slurm/job_submit_require_timelimit.so	104	lib/slurm/job_submit_require_timelimit.so
		105	lib/slurm/job_submit_throttle.a
		106	lib/slurm/job_submit_throttle.so
94	lib/slurm/jobacct_gather_aix.a	107	lib/slurm/jobacct_gather_aix.a
95	lib/slurm/jobacct_gather_aix.so	108	lib/slurm/jobacct_gather_aix.so
96	lib/slurm/jobacct_gather_cgroup.a	109	lib/slurm/jobacct_gather_cgroup.a
Lines 125-130 Link Here
125	lib/slurm/mpi_openmpi.so	138	lib/slurm/mpi_openmpi.so
126	lib/slurm/mpi_pmi2.a	139	lib/slurm/mpi_pmi2.a
127	lib/slurm/mpi_pmi2.so	140	lib/slurm/mpi_pmi2.so
		141	lib/slurm/preempt_job_prio.a
		142	lib/slurm/preempt_job_prio.so
128	lib/slurm/preempt_none.a	143	lib/slurm/preempt_none.a
129	lib/slurm/preempt_none.so	144	lib/slurm/preempt_none.so
130	lib/slurm/preempt_partition_prio.a	145	lib/slurm/preempt_partition_prio.a
Lines 141-146 Link Here
141	lib/slurm/proctrack_linuxproc.so	156	lib/slurm/proctrack_linuxproc.so
142	lib/slurm/proctrack_pgid.a	157	lib/slurm/proctrack_pgid.a
143	lib/slurm/proctrack_pgid.so	158	lib/slurm/proctrack_pgid.so
		159	lib/slurm/route_default.a
		160	lib/slurm/route_default.so
		161	lib/slurm/route_topology.a
		162	lib/slurm/route_topology.so
144	lib/slurm/sched_backfill.a	163	lib/slurm/sched_backfill.a
145	lib/slurm/sched_backfill.so	164	lib/slurm/sched_backfill.so
146	lib/slurm/sched_builtin.a	165	lib/slurm/sched_builtin.a
Lines 151-156 Link Here
151	lib/slurm/sched_wiki.so	170	lib/slurm/sched_wiki.so
152	lib/slurm/sched_wiki2.a	171	lib/slurm/sched_wiki2.a
153	lib/slurm/sched_wiki2.so	172	lib/slurm/sched_wiki2.so
		173	lib/slurm/select_alps.a
		174	lib/slurm/select_alps.so
154	lib/slurm/select_cons_res.a	175	lib/slurm/select_cons_res.a
155	lib/slurm/select_cons_res.so	176	lib/slurm/select_cons_res.so
156	lib/slurm/select_cray.a	177	lib/slurm/select_cray.a
Lines 159-172 Link Here
159	lib/slurm/select_linear.so	180	lib/slurm/select_linear.so
160	lib/slurm/select_serial.a	181	lib/slurm/select_serial.a
161	lib/slurm/select_serial.so	182	lib/slurm/select_serial.so
		183	lib/slurm/slurmctld_nonstop.a
		184	lib/slurm/slurmctld_nonstop.so
162	lib/slurm/spank_pbs.a	185	lib/slurm/spank_pbs.a
163	lib/slurm/spank_pbs.so	186	lib/slurm/spank_pbs.so
164	lib/slurm/src/sattach/sattach.wrapper.c	187	lib/slurm/src/sattach/sattach.wrapper.c
165	lib/slurm/src/srun/srun.wrapper.c	188	lib/slurm/src/srun/srun.wrapper.c
		189	lib/slurm/switch_cray.a
		190	lib/slurm/switch_cray.so
		191	lib/slurm/switch_generic.a
		192	lib/slurm/switch_generic.so
166	lib/slurm/switch_none.a	193	lib/slurm/switch_none.a
167	lib/slurm/switch_none.so	194	lib/slurm/switch_none.so
168	lib/slurm/task_cgroup.a	195	lib/slurm/task_cgroup.a
169	lib/slurm/task_cgroup.so	196	lib/slurm/task_cgroup.so
		197	lib/slurm/task_cray.a
		198	lib/slurm/task_cray.so
170	lib/slurm/task_none.a	199	lib/slurm/task_none.a
171	lib/slurm/task_none.so	200	lib/slurm/task_none.so
172	lib/slurm/topology_3d_torus.a	201	lib/slurm/topology_3d_torus.a
Lines 228-233 Link Here
228	man/man3/slurm_free_ctl_conf.3.gz	257	man/man3/slurm_free_ctl_conf.3.gz
229	man/man3/slurm_free_front_end_info_msg.3.gz	258	man/man3/slurm_free_front_end_info_msg.3.gz
230	man/man3/slurm_free_job_alloc_info_response_msg.3.gz	259	man/man3/slurm_free_job_alloc_info_response_msg.3.gz
		260	man/man3/slurm_free_job_array_resp.3.gz
231	man/man3/slurm_free_job_info_msg.3.gz	261	man/man3/slurm_free_job_info_msg.3.gz
232	man/man3/slurm_free_job_step_create_response_msg.3.gz	262	man/man3/slurm_free_job_step_create_response_msg.3.gz
233	man/man3/slurm_free_job_step_info_response_msg.3.gz	263	man/man3/slurm_free_job_step_info_response_msg.3.gz
Lines 297-303 Link Here
297	man/man3/slurm_read_hostfile.3.gz	327	man/man3/slurm_read_hostfile.3.gz
298	man/man3/slurm_reconfigure.3.gz	328	man/man3/slurm_reconfigure.3.gz
299	man/man3/slurm_requeue.3.gz	329	man/man3/slurm_requeue.3.gz
		330	man/man3/slurm_requeue2.3.gz
300	man/man3/slurm_resume.3.gz	331	man/man3/slurm_resume.3.gz
		332	man/man3/slurm_resume2.3.gz
301	man/man3/slurm_set_debug_level.3.gz	333	man/man3/slurm_set_debug_level.3.gz
302	man/man3/slurm_set_trigger.3.gz	334	man/man3/slurm_set_trigger.3.gz
303	man/man3/slurm_shutdown.3.gz	335	man/man3/slurm_shutdown.3.gz
Lines 324-334 Link Here
324	man/man3/slurm_strerror.3.gz	356	man/man3/slurm_strerror.3.gz
325	man/man3/slurm_submit_batch_job.3.gz	357	man/man3/slurm_submit_batch_job.3.gz
326	man/man3/slurm_suspend.3.gz	358	man/man3/slurm_suspend.3.gz
		359	man/man3/slurm_suspend2.3.gz
327	man/man3/slurm_takeover.3.gz	360	man/man3/slurm_takeover.3.gz
328	man/man3/slurm_terminate_job.3.gz	361	man/man3/slurm_terminate_job.3.gz
329	man/man3/slurm_terminate_job_step.3.gz	362	man/man3/slurm_terminate_job_step.3.gz
330	man/man3/slurm_update_front_end.3.gz	363	man/man3/slurm_update_front_end.3.gz
331	man/man3/slurm_update_job.3.gz	364	man/man3/slurm_update_job.3.gz
		365	man/man3/slurm_update_job2.3.gz
332	man/man3/slurm_update_node.3.gz	366	man/man3/slurm_update_node.3.gz
333	man/man3/slurm_update_partition.3.gz	367	man/man3/slurm_update_partition.3.gz
334	man/man3/slurm_update_reservation.3.gz	368	man/man3/slurm_update_reservation.3.gz
Lines 339-344 Link Here
339	man/man5/cray.conf.5.gz	373	man/man5/cray.conf.5.gz
340	man/man5/ext_sensors.conf.5.gz	374	man/man5/ext_sensors.conf.5.gz
341	man/man5/gres.conf.5.gz	375	man/man5/gres.conf.5.gz
		376	man/man5/nonstop.conf.5.gz
342	man/man5/slurm.conf.5.gz	377	man/man5/slurm.conf.5.gz
343	man/man5/slurmdbd.conf.5.gz	378	man/man5/slurmdbd.conf.5.gz
344	man/man5/topology.conf.5.gz	379	man/man5/topology.conf.5.gz
Lines 352-475 Link Here
352	sbin/slurmd	387	sbin/slurmd
353	sbin/slurmdbd	388	sbin/slurmdbd
354	sbin/slurmstepd	389	sbin/slurmstepd
355	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/Slurm_Entity.pdf	390	%%DOCSDIR%%/html/Slurm_Entity.pdf
356	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/Slurm_Individual.pdf	391	%%DOCSDIR%%/html/Slurm_Individual.pdf
357	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/accounting.html	392	%%DOCSDIR%%/html/accounting.html
358	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/accounting_storageplugins.html	393	%%DOCSDIR%%/html/accounting_storageplugins.html
359	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/acct_gather_energy_plugins.html	394	%%DOCSDIR%%/html/acct_gather_energy_plugins.html
360	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/acct_gather_profile_plugins.html	395	%%DOCSDIR%%/html/acct_gather_profile_plugins.html
361	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/add.html	396	%%DOCSDIR%%/html/add.html
362	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/allocation_pies.gif	397	%%DOCSDIR%%/html/allocation_pies.gif
363	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/api.html	398	%%DOCSDIR%%/html/api.html
364	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/arch.gif	399	%%DOCSDIR%%/html/arch.gif
365	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/authplugins.html	400	%%DOCSDIR%%/html/authplugins.html
366	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/big_sys.html	401	%%DOCSDIR%%/html/big_sys.html
367	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/bluegene.html	402	%%DOCSDIR%%/html/bluegene.html
368	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/bull.jpg	403	%%DOCSDIR%%/html/bull.jpg
369	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/cgroups.html	404	%%DOCSDIR%%/html/cgroups.html
370	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/checkpoint_blcr.html	405	%%DOCSDIR%%/html/checkpoint_blcr.html
371	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/checkpoint_plugins.html	406	%%DOCSDIR%%/html/checkpoint_plugins.html
372	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/coding_style.pdf	407	%%DOCSDIR%%/html/coding_style.pdf
373	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/configurator.easy.html	408	%%DOCSDIR%%/html/configurator.easy.html
374	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/configurator.html	409	%%DOCSDIR%%/html/configurator.html
375	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/cons_res.html	410	%%DOCSDIR%%/html/cons_res.html
376	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/cons_res_share.html	411	%%DOCSDIR%%/html/cons_res_share.html
377	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/contributor.html	412	%%DOCSDIR%%/html/contributor.html
378	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/cpu_management.html	413	%%DOCSDIR%%/html/core_spec.html
379	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/cray.html	414	%%DOCSDIR%%/html/core_spec_plugins.html
380	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/crypto_plugins.html	415	%%DOCSDIR%%/html/cpu_management.html
381	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/disclaimer.html	416	%%DOCSDIR%%/html/cray.html
382	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/dist_plane.html	417	%%DOCSDIR%%/html/cray_alps.html
383	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/documentation.html	418	%%DOCSDIR%%/html/crypto_plugins.html
384	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/download.html	419	%%DOCSDIR%%/html/disclaimer.html
385	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/dynalloc.html	420	%%DOCSDIR%%/html/dist_plane.html
386	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/elastic_computing.html	421	%%DOCSDIR%%/html/documentation.html
387	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/entities.gif	422	%%DOCSDIR%%/html/download.html
388	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/example_usage.gif	423	%%DOCSDIR%%/html/dynalloc.html
389	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/ext_sensorsplugins.html	424	%%DOCSDIR%%/html/elastic_computing.html
390	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/faq.html	425	%%DOCSDIR%%/html/entities.gif
391	%%PORTDOCS%%%%DOCSDIR%%-2.6.4/html/gang_scheduling.html	426	%%DOCSDIR%%/html/example_usage.gif
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