Attachment #173018 for bug #211393




LIB_DEPENDS=		libcurl.so:ftp/curl \
			libpcre.so:devel/pcre

CONFIGURE_ARGS=		--disable-java \
			--enable-R-shlib \
			rdocdir=${DOCSDIR}
GNU_CONFIGURE=		yes
INSTALL_TARGET=		install-strip
ONLY_FOR_ARCHS= 	i386 amd64
USES=			fortran iconv localbase objc:compiler perl5
USE_PERL5=		build
USE_LDCONFIG=		${PREFIX}/lib/R/lib
CONFIGURE_ARGS=		--disable-java --enable-memory-profiling rdocdir=${DOCSDIR}
INSTALL_TARGET=		install-strip

OPTIONS_DEFINE=		DOCS ICU INFO LETTER LDOUBLE NLS X11
OPTIONS_GROUP=		NEEDGCC NEEDX11
OPTIONS_GROUP_NEEDGCC=	LTO OPENMP
OPTIONS_GROUP_NEEDX11=	GHOSTSCRIPT JPEG CAIROPANGO PDF PNG TCLTK TIFF
OPTIONS_RADIO=		BLAS
OPTIONS_RADIO_BLAS=	ATLAS OPENBLAS NETLIB RBLAS

OPTIONS_SUB=		YES

ATLAS_DESC=		ATLAS BLAS implementation
GHOSTSCRIPT_DESC=	Graphics device for bitmap files via Ghostscript
CAIROPANGO_DESC=	Cairo graphics device and Pango multi-language text
INFO_DESC=		GNU info manuals
JPEG_DESC=		JPEG graphics device
LDOUBLE_DESC=		Enable long double data type
LETTER_DESC=		US letter paper
LTO_DESC=		Use Link Time Optimization
NEEDGCC_DESC=		Require GCC
NEEDX11_DESC=		Require X11
NEEDX11_DESC=		X11-Implying Options
NETLIB_DESC=		Netlib BLAS implementation
OPENBLAS_DESC=		OpenBLAS BLAS implementation
PDF_DESC=		PDF manuals (requires TeX)

RBLAS_DESC=		Use R-bundled BLAS implementation
X11_DESC=		X11 graphics device

OPTIONS_DEFAULT=	CAIROPANGO GHOSTSCRIPT ICU INFO JPEG LDOUBLE PNG RBLAS \
			TCLTK TIFF X11

OPTIONS_DEFAULT_armv6+=		MISSING
OPTIONS_DEFAULT_powerpc+=	MISSING
OPTIONS_DEFAULT_powerpc64+=	MISSING
OPTIONS_DEFAULT_sparc64+=	MISSING

ATLAS_USES=		blaslapack:atlas
ATLAS_VARS=		MANUAL_PACKAGE_BUILD=\
"Choose a BLAS option other than ATLAS for package building."
.endif

CAIROPANGO_IMPLIES=	X11
CAIROPANGO_CONFIGURE_WITH=cairo
CAIROPANGO_USES=	gettext jpeg pkgconfig
CAIROPANGO_USE=		gnome=pango,cairo

DOCS_BUILD_DEPENDS=	texi2any:print/texinfo

GHOSTSCRIPT_IMPLIES=	X11


JPEG_IMPLIES=		X11
JPEG_CONFIGURE_WITH=	jpeglib
JPEG_CONFIGURE_ENV=	r_cv_header_jpeglib_h=yes
JPEG_USES=		jpeg

LETTER_CONFIGURE_ENV=	R_PAPERSIZE=letter

LIBR_CONFIGURE_ENABLE=	R-shlib

LDOUBLE_CONFIGURE_ENABLE=long-double

LTO_CONFIGURE_ENABLE=	lto
LTO_USE=		GCC

.for i in acos asin atan cos cosh exp log pow sin sinh tan tanh
MISSING_CONFIGURE_ENV+=	ac_cv_have_decl_c${i}=yes
.endfor
MISSING_LIB_DEPENDS=	libmissing.so:math/libmissing
MISSING_VARS=		LIBM="-L${LOCALBASE}/lib -lmissing -lm" \
			LIBMH=<missing_math.h>
MISSING_VARS_OFF=	LIBM='-lquadmath -lm' \
			LIBMH=<quadmath.h>

NETLIB_USES=		blaslapack:netlib

NLS_CONFIGURE_OFF=	--disable-nls

OPENBLAS_USES=		blaslapack:openblas

OPENMP_CONFIGURE_ENABLE=openmp
OPENMP_USES=		compiler:openmp

CAIROPANGO_IMPLIES=	X11
CAIROPANGO_CONFIGURE_WITH=cairo
CAIROPANGO_USES=	gettext jpeg pkgconfig
CAIROPANGO_USE=		gnome=pango,cairo

PDF_IMPLIES=		DOCS X11
PDF_USE=		tex=dvipsk:build,kpathsea:build,pdftex:build
PDF_INSTALL_TARGET=	install-pdf

RBLAS_CONFIGURE_ON=	--without-blas \
			--without-lapack
RBLAS_CONFIGURE_OFF=	--with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \
			--with-lapack="${LAPACKLIB}" \
			--enable-BLAS-shlib \
			--enable-memory-profiling

TCLTK_IMPLIES=		X11
TCLTK_USES=		tcl tk:84+
TCLTK_CONFIGURE_WITH=	tcltk

THREADS_CONFIGURE_ON=	--enable-threads=posix
THREADS_CONFIGURE_OFF=	--disable-threads

TIFF_IMPLIES=		X11
TIFF_LIB_DEPENDS=	libtiff.so:graphics/tiff
TIFF_CONFIGURE_WITH=	libtiff

			RBLAS_SOVERSION="${RBLAS_SOVERSION}" \
			RLAPACK_SOVERSION="${RLAPACK_SOVERSION}"

.include "compiler.mk"
.include <bsd.port.options.mk>

.if ${OSVERSION} < 1000015
USE_GCC=		yes
${ARCH} == sparc64)
.for i in coshl erfcl erfl lgammal powl sinhl tanhl tgammal
CFLAGS+=		-fno-builtin-${i}
LDFLAGS+=		-fno-builtin-${i}
.endfor
.endif

post-patch:
.if !${PORT_OPTIONS:MMISSING}
.if ${OSVERSION} < 1000016
	@${REINPLACE_CMD} -e \
's/# define EXP expl/# define EXP(x) (long double)expq((__float128)(x))/' \
		${WRKSRC}/src/nmath/pnchisq.c \
		${WRKSRC}/src/nmath/pgamma.c
	@${REINPLACE_CMD} -e \
's/# define LOG logl/# define LOG(x) (long double)logq((__float128)(x))/' \
		${WRKSRC}/src/nmath/pnchisq.c \
		${WRKSRC}/src/nmath/pgamma.c
.endif
.if ${OSVERSION} < 1000034
	@${REINPLACE_CMD} -Ee 's/(log)(1p)?l\(/(long double)\1\2q((__float128)/'\
		${WRKSRC}/src/nmath/dnbeta.c \
		${WRKSRC}/src/nmath/pnbeta.c
.endif
	@${REINPLACE_CMD} -Ee \
's/powl\((.*)(long double)/(long double)powq((__float128)\1__float128/' \
		${WRKSRC}/src/main/format.c
.else # !PORT_OPTIONS:MMISSING
.if ${OSVERSION} > 1000052 && \
(${ARCH} == amd64 || ${ARCH} == i386 || ${ARCH} == ia64 || ${ARCH} == pc98 || \
${ARCH} == sparc64)
	@${REINPLACE_CMD} -e '\|^FLIBS="$$ac_cv_f77_libs"|s|"|&${LIBM} |' \
		${WRKSRC}/configure
.endif
	@${REINPLACE_CMD} -e \
'\|#[[:blank:]]*include[[:blank:]]*<complex.h>|{x;s|^.*$$|#include "missing_complex.h"|;H;x;}' \
		${WRKSRC}/src/main/complex.c
.endif # !PORT_OPTIONS:MMISSING
	@${REINPLACE_CMD} -e \
'\|#[[:blank:]]*include[[:blank:]]*<math.h>|{x;s|^.*$$|#include ${LIBMH}|;H;x;}'\
		${WRKSRC}/src/nmath/nmath.h \
		${WRKSRC}/src/include/Rmath.h0.in
	@${REINPLACE_CMD} -e 's|(libdir)/pkgconfig|(prefix)/libdata/pkgconfig|g'\
		${WRKSRC}/src/nmath/standalone/Makefile.in \
		${WRKSRC}/src/unix/Makefile.in
	@${REINPLACE_CMD} -e "s|/usr/local|${LOCALBASE}|g" \
		${WRKSRC}/configure
		${WRKSRC}/src/library/profile/Rprofile.unix \
		${WRKSRC}/src/scripts/javareconf.in

.if !${PORT_OPTIONS:MMISSING}
pre-configure:
	@if [ ! -f ${_GCC_RUNTIME}/libquadmath.a ] ; then \
		IGNORE="\n\n\n%s\n\n\n" "libquadmath is not available for your\
		compiler and architecture: please enable the MISSING option."; \
	fi
.endif

post-install:
.for L in R Rblas Rlapack
	@if [ -d ${STAGEDIR}${PREFIX}/lib/R/lib ] ; then \

Lines 1-2 Link Here

(-)compiler.mk (-2 lines)
1	# Compiler settings required for R and the R-cran ports.
2	USE_GCC= yes




--- configure.orig	2016-04-25 22:17:08 UTC
+++ configure
@@ -22470,13 +22470,13 @@ if test "x$ac_cv_lib_mw__mwvalidcheckl" 
   LIBM=-lmw
 fi
 
-  { $as_echo "$as_me:${as_lineno-$LINENO}: checking for cos in -lm" >&5
-$as_echo_n "checking for cos in -lm... " >&6; }
+  { $as_echo "$as_me:${as_lineno-$LINENO}: checking for cos in -lquadmath -lquadmath -lm" >&5
+$as_echo_n "checking for cos in -lquadmath -lquadmath -lm... " >&6; }
 if ${ac_cv_lib_m_cos+:} false; then :
   $as_echo_n "(cached) " >&6
 else
   ac_check_lib_save_LIBS=$LIBS
-LIBS="-lm  $LIBS"
+LIBS="-lquadmath -lquadmath -lm  $LIBS"
 cat confdefs.h - <<_ACEOF >conftest.$ac_ext
 /* end confdefs.h.  */
 
@@ -22507,18 +22507,18 @@ fi
 { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_m_cos" >&5
 $as_echo "$ac_cv_lib_m_cos" >&6; }
 if test "x$ac_cv_lib_m_cos" = xyes; then :
-  LIBM="$LIBM -lm"
+  LIBM="$LIBM -lquadmath -lquadmath -lm"
 fi
 
   ;;
 *)
-  { $as_echo "$as_me:${as_lineno-$LINENO}: checking for cos in -lm" >&5
-$as_echo_n "checking for cos in -lm... " >&6; }
+  { $as_echo "$as_me:${as_lineno-$LINENO}: checking for cos in -lquadmath -lquadmath -lm" >&5
+$as_echo_n "checking for cos in -lquadmath  -lquadmath -lm... " >&6; }
 if ${ac_cv_lib_m_cos+:} false; then :
   $as_echo_n "(cached) " >&6
 else
   ac_check_lib_save_LIBS=$LIBS
-LIBS="-lm  $LIBS"
+LIBS="-lquadmath -lquadmath -lm  $LIBS"
 cat confdefs.h - <<_ACEOF >conftest.$ac_ext
 /* end confdefs.h.  */
 
@@ -22549,7 +22549,7 @@ fi
 { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_m_cos" >&5
 $as_echo "$ac_cv_lib_m_cos" >&6; }
 if test "x$ac_cv_lib_m_cos" = xyes; then :
-  LIBM=-lm
+  LIBM="-lquadmath -lquadmath -lm"
 fi
 
   ;;
@@ -22560,13 +22560,13 @@ esac
 ## </NOTE>
 ## AC_CHECK_LIBM computes LIBM but does not add to LIBS, hence we do
 ## the following as well.
-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for sin in -lm" >&5
-$as_echo_n "checking for sin in -lm... " >&6; }
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for sin in -lquadmath -lquadmath -lm" >&5
+$as_echo_n "checking for sin in -lquadmath -lquadmath -lm... " >&6; }
 if ${ac_cv_lib_m_sin+:} false; then :
   $as_echo_n "(cached) " >&6
 else
   ac_check_lib_save_LIBS=$LIBS
-LIBS="-lm  $LIBS"
+LIBS="-lquadmath -lquadmath -lm  $LIBS"
 cat confdefs.h - <<_ACEOF >conftest.$ac_ext
 /* end confdefs.h.  */
 
@@ -22601,7 +22601,7 @@ if test "x$ac_cv_lib_m_sin" = xyes; then
 #define HAVE_LIBM 1
 _ACEOF
 
-  LIBS="-lm $LIBS"
+  LIBS="-lquadmath -lquadmath -lm $LIBS"
 
 fi
 
@@ -27958,7 +27958,7 @@ fi
 ## if nothing was obtained for SHLIB_CXXLDFLAGS.
 ##
 ## Note also that some systems (formerly AIX) do not allow for unresolved
-## symbols at link time.  For such systems, we link against -lm (in case
+## symbols at link time.  For such systems, we link against -lquadmath -lm (in case
 ## it exists) when building a shlib module via SHLIB_LIBADD.
 
 main_ld="${CC}"
@@ -30147,7 +30147,7 @@ if ${ac_cv_lib_rt_clock_gettime+:} false
   $as_echo_n "(cached) " >&6
 else
   ac_check_lib_save_LIBS=$LIBS
-LIBS="-lrt  $LIBS"
+LIBS="$LIBS"
 cat confdefs.h - <<_ACEOF >conftest.$ac_ext
 /* end confdefs.h.  */
 
@@ -30190,7 +30190,7 @@ if test "x$ac_cv_lib_rt_clock_gettime" =
 #define HAVE_LIBRT 1
 _ACEOF
 
-  LIBS="-lrt $LIBS"
+  LIBS="$LIBS"
 
 fi
 
@@ -35109,7 +35109,7 @@ fi
     ## Part 2.  Try finding the tk library.
     if test -n "${TK_CONFIG}"; then
       . ${TK_CONFIG}
-      TCLTK_LIBS="${TCLTK_LIBS} ${TK_LIB_SPEC} ${TK_XLIBSW}"
+      TCLTK_LIBS="${TCLTK_LIBS} ${TK_LIB_SPEC} ${TK_XLIBSW} ${TCL_LD_FLAGS}"
     else
       { $as_echo "$as_me:${as_lineno-$LINENO}: checking for Tk_Init in -ltk" >&5
 $as_echo_n "checking for Tk_Init in -ltk... " >&6; }

Lines 1-11 Link Here

(-)files/patch-src__nmath__standalone__test.c (-11 lines)
1	--- src/nmath/standalone/test.c.orig 2015-08-25 22:18:53 UTC
2	+++ src/nmath/standalone/test.c
3	@@ -38,7 +38,7 @@ main(int argc, char** argv)
4	qnorm(0.7, 0.0, 1.0, 0, 0);
5	printf("*** loaded '%s'\n", argv[0]);
6	set_seed(123, 456);
7	- N01_kind = AHRENS_DIETER;
8	+ N01type N01_kind = AHRENS_DIETER;
9	printf("one normal %f\n", norm_rand());
10	set_seed(123, 456);
11	N01_kind = BOX_MULLER;




--- src/extra/tre/tre-internal.h.orig	2016-07-23 16:50:17 UTC
+++ src/extra/tre/tre-internal.h
@@ -18,6 +18,7 @@
 #include <wctype.h>
 #endif /* !HAVE_WCTYPE_H */
 
+#include <limits.h>
 #include <ctype.h>
+#include <stdint.h>
 #include "tre.h"
 
 #ifdef TRE_DEBUG
 #ifdef TRE_WCHAR
 
 /* Wide characters. */
+#if WCHAR_MAX <= INT_MAX
 typedef wint_t tre_cint_t;
+#else /* WCHAR_MAX > INT_MAX */
+#define TRE_CHAR_MAX INT_MAX
+#endif
 /* Workaround problem seen on AIX, (2010 & 2015), e.g.,
     https://stat.ethz.ch/pipermail/r-devel/2015-October/071902.html
   WCHAR_MAX = UINT32_MAX on AIX and that is "not possible to work"




lib/R/include/Rmath.h
lib/R/include/Rversion.h
lib/R/include/S.h
lib/R/lib/libRblas.so
lib/R/lib/libRblas.so.%%RBLAS_SOVERSION%%
lib/R/lib/libRlapack.so
lib/R/lib/libRlapack.so.%%RLAPACK_SOVERSION%%
lib/R/lib/libR.so
lib/R/lib/libR.so.%%R_SOVERSION%%
lib/R/library/KernSmooth/DESCRIPTION
lib/R/library/KernSmooth/INDEX
lib/R/library/KernSmooth/Meta/Rd.rds

lib/R/share/texmf/tex/latex/omscmtt.fd
lib/R/share/texmf/tex/latex/ts1aer.fd
lib/R/share/texmf/tex/latex/ts1aett.fd
libdata/pkgconfig/libR.pc
man/man1/R.1.gz
man/man1/Rscript.1.gz
%%DOCSDIR%%/html/NEWS.2.html

Return to bug 211393

Lines 99-110 Link Here

(-)pkg-plist (-7 / +7 lines)
99	lib/R/include/Rmath.h	99	lib/R/include/Rmath.h
100	lib/R/include/Rversion.h	100	lib/R/include/Rversion.h
101	lib/R/include/S.h	101	lib/R/include/S.h
102	%%RBLAS%%lib/R/lib/libRblas.so	102	lib/R/lib/libRblas.so
103	%%RBLAS%%lib/R/lib/libRblas.so.%%RBLAS_SOVERSION%%	103	lib/R/lib/libRblas.so.%%RBLAS_SOVERSION%%
104	%%RBLAS%%lib/R/lib/libRlapack.so	104	lib/R/lib/libRlapack.so
105	%%RBLAS%%lib/R/lib/libRlapack.so.%%RLAPACK_SOVERSION%%	105	lib/R/lib/libRlapack.so.%%RLAPACK_SOVERSION%%
106	%%LIBR%%lib/R/lib/libR.so	106	lib/R/lib/libR.so
107	%%LIBR%%lib/R/lib/libR.so.%%R_SOVERSION%%	107	lib/R/lib/libR.so.%%R_SOVERSION%%
108	lib/R/library/KernSmooth/DESCRIPTION	108	lib/R/library/KernSmooth/DESCRIPTION
109	lib/R/library/KernSmooth/INDEX	109	lib/R/library/KernSmooth/INDEX
110	lib/R/library/KernSmooth/Meta/Rd.rds	110	lib/R/library/KernSmooth/Meta/Rd.rds
Lines 1486-1492 Link Here
1486	lib/R/share/texmf/tex/latex/omscmtt.fd	1486	lib/R/share/texmf/tex/latex/omscmtt.fd
1487	lib/R/share/texmf/tex/latex/ts1aer.fd	1487	lib/R/share/texmf/tex/latex/ts1aer.fd
1488	lib/R/share/texmf/tex/latex/ts1aett.fd	1488	lib/R/share/texmf/tex/latex/ts1aett.fd
1489	%%LIBR%%libdata/pkgconfig/libR.pc	1489	libdata/pkgconfig/libR.pc
1490	man/man1/R.1.gz	1490	man/man1/R.1.gz
1491	man/man1/Rscript.1.gz	1491	man/man1/Rscript.1.gz
1492	%%DOCSDIR%%/html/NEWS.2.html	1492	%%DOCSDIR%%/html/NEWS.2.html

Lines 29-61 Link Here

(-)Makefile (-97 / +35 lines)
29	LIB_DEPENDS= libcurl.so:ftp/curl \	29	LIB_DEPENDS= libcurl.so:ftp/curl \
30	libpcre.so:devel/pcre	30	libpcre.so:devel/pcre
31		31
		32	CONFIGURE_ARGS= --disable-java \
		33	--enable-R-shlib \
		34	rdocdir=${DOCSDIR}
32	GNU_CONFIGURE= yes	35	GNU_CONFIGURE= yes
33	USES= fortran iconv objc:compiler perl5	36	INSTALL_TARGET= install-strip
		37	ONLY_FOR_ARCHS= i386 amd64
		38	USES= fortran iconv localbase objc:compiler perl5
34	USE_PERL5= build	39	USE_PERL5= build
35	USE_LDCONFIG= ${PREFIX}/lib/R/lib	40	USE_LDCONFIG= ${PREFIX}/lib/R/lib
36	CONFIGURE_ARGS= --disable-java --enable-memory-profiling rdocdir=${DOCSDIR}
37	INSTALL_TARGET= install-strip
38		41
39	OPTIONS_DEFINE= DOCS ICU INFO LETTER LIBR LDOUBLE LTO MISSING NLS \	42	OPTIONS_DEFINE= DOCS ICU INFO LETTER LDOUBLE NLS X11
40	OPENMP THREADS X11	43	OPTIONS_GROUP= NEEDGCC NEEDX11
41	OPTIONS_GROUP= NEEDX11	44	OPTIONS_GROUP_NEEDGCC= LTO OPENMP
42	OPTIONS_GROUP_NEEDX11= GHOSTSCRIPT JPEG CAIROPANGO PDF PNG TCLTK TIFF	45	OPTIONS_GROUP_NEEDX11= GHOSTSCRIPT JPEG CAIROPANGO PDF PNG TCLTK TIFF
43	OPTIONS_SINGLE= BLAS	46	OPTIONS_RADIO= BLAS
44	OPTIONS_SINGLE_BLAS= ATLAS OPENBLAS NETLIB RBLAS	47	OPTIONS_RADIO_BLAS= ATLAS OPENBLAS NETLIB RBLAS
45		48
46	OPTIONS_SUB= YES	49	OPTIONS_SUB= YES
47		50
48	ATLAS_DESC= ATLAS BLAS implementation	51	ATLAS_DESC= ATLAS BLAS implementation
49	GHOSTSCRIPT_DESC= Graphics Device for Bitmap Files via Ghostscript	52	GHOSTSCRIPT_DESC= Graphics device for bitmap files via Ghostscript
50	CAIROPANGO_DESC= Cairo graphics device and Pango multi-language text	53	CAIROPANGO_DESC= Cairo graphics device and Pango multi-language text
51	INFO_DESC= GNU info manuals	54	INFO_DESC= GNU info manuals
52	JPEG_DESC= JPEG graphics device	55	JPEG_DESC= JPEG graphics device
53	LDOUBLE_DESC= Enable long double data type	56	LDOUBLE_DESC= Enable long double data type
54	LETTER_DESC= US Letter paper	57	LETTER_DESC= US letter paper
55	LIBR_DESC= Build dynamic (shared) R library	58	LTO_DESC= Use Link Time Optimization
56	LTO_DESC= Try to produce faster code through LTO	59	NEEDGCC_DESC= Require GCC
57	MISSING_DESC= Use libmissing rather than libquadmath	60	NEEDX11_DESC= Require X11
58	NEEDX11_DESC= X11-Implying Options
59	NETLIB_DESC= Netlib BLAS implementation	61	NETLIB_DESC= Netlib BLAS implementation
60	OPENBLAS_DESC= OpenBLAS BLAS implementation	62	OPENBLAS_DESC= OpenBLAS BLAS implementation
61	PDF_DESC= PDF manuals (requires TeX)	63	PDF_DESC= PDF manuals (requires TeX)
Lines 63-81 Link Here
63	RBLAS_DESC= Use R-bundled BLAS implementation	65	RBLAS_DESC= Use R-bundled BLAS implementation
64	X11_DESC= X11 graphics device	66	X11_DESC= X11 graphics device
65		67
66	OPTIONS_DEFAULT= GHOSTSCRIPT ICU INFO JPEG LTO LIBR OPENBLAS OPENMP \	68	OPTIONS_DEFAULT= CAIROPANGO GHOSTSCRIPT ICU INFO JPEG LDOUBLE PNG RBLAS \
67	CAIROPANGO PNG TCLTK TIFF THREADS X11	69	TCLTK TIFF X11
68		70
69	OPTIONS_DEFAULT_armv6+= MISSING
70	OPTIONS_DEFAULT_powerpc+= MISSING
71	OPTIONS_DEFAULT_powerpc64+= MISSING
72	OPTIONS_DEFAULT_sparc64+= MISSING
73
74	ATLAS_USES= blaslapack:atlas	71	ATLAS_USES= blaslapack:atlas
75	.if defined(BATCH) \|\| defined(PACKAGE_BUILDING)	72	ATLAS_VARS= MANUAL_PACKAGE_BUILD=\
76	ATLAS_IGNORE= Choose a BLAS option other than ATLAS for package building.	73	"Choose a BLAS option other than ATLAS for package building."
77	.endif
78		74
		75	CAIROPANGO_IMPLIES= X11
		76	CAIROPANGO_CONFIGURE_WITH=cairo
		77	CAIROPANGO_USES= gettext jpeg pkgconfig
		78	CAIROPANGO_USE= gnome=pango,cairo
		79
79	DOCS_BUILD_DEPENDS= texi2any:print/texinfo	80	DOCS_BUILD_DEPENDS= texi2any:print/texinfo
80		81
81	GHOSTSCRIPT_IMPLIES= X11	82	GHOSTSCRIPT_IMPLIES= X11
Lines 90-113 Link Here
90		91
91	JPEG_IMPLIES= X11	92	JPEG_IMPLIES= X11
92	JPEG_CONFIGURE_WITH= jpeglib	93	JPEG_CONFIGURE_WITH= jpeglib
		94	JPEG_CONFIGURE_ENV= r_cv_header_jpeglib_h=yes
		95	JPEG_USES= jpeg
93		96
94	LETTER_CONFIGURE_ENV= R_PAPERSIZE=letter	97	LETTER_CONFIGURE_ENV= R_PAPERSIZE=letter
95		98
96	LIBR_CONFIGURE_ENABLE= R-shlib
97
98	LDOUBLE_CONFIGURE_ENABLE=long-double	99	LDOUBLE_CONFIGURE_ENABLE=long-double
99		100
100	LTO_CONFIGURE_ENABLE= lto	101	LTO_CONFIGURE_ENABLE= lto
		102	LTO_USE= GCC
101		103
102	.for i in acos asin atan cos cosh exp log pow sin sinh tan tanh
103	MISSING_CONFIGURE_ENV+= ac_cv_have_decl_c${i}=yes
104	.endfor
105	MISSING_LIB_DEPENDS= libmissing.so:math/libmissing
106	MISSING_VARS= LIBM="-L${LOCALBASE}/lib -lmissing -lm" \
107	LIBMH=<missing_math.h>
108	MISSING_VARS_OFF= LIBM='-lquadmath -lm' \
109	LIBMH=<quadmath.h>
110
111	NETLIB_USES= blaslapack:netlib	104	NETLIB_USES= blaslapack:netlib
112		105
113	NLS_CONFIGURE_OFF= --disable-nls	106	NLS_CONFIGURE_OFF= --disable-nls
Lines 116-127 Link Here
116	OPENBLAS_USES= blaslapack:openblas	109	OPENBLAS_USES= blaslapack:openblas
117		110
118	OPENMP_CONFIGURE_ENABLE=openmp	111	OPENMP_CONFIGURE_ENABLE=openmp
		112	OPENMP_USES= compiler:openmp
119		113
120	CAIROPANGO_IMPLIES= X11
121	CAIROPANGO_CONFIGURE_WITH=cairo
122	CAIROPANGO_USES= gettext jpeg pkgconfig
123	CAIROPANGO_USE= gnome=pango,cairo
124
125	PDF_IMPLIES= DOCS X11	114	PDF_IMPLIES= DOCS X11
126	PDF_USE= tex=dvipsk:build,kpathsea:build,pdftex:build	115	PDF_USE= tex=dvipsk:build,kpathsea:build,pdftex:build
127	PDF_INSTALL_TARGET= install-pdf	116	PDF_INSTALL_TARGET= install-pdf
Lines 136-150 Link Here
136	RBLAS_CONFIGURE_ON= --without-blas \	125	RBLAS_CONFIGURE_ON= --without-blas \
137	--without-lapack	126	--without-lapack
138	RBLAS_CONFIGURE_OFF= --with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \	127	RBLAS_CONFIGURE_OFF= --with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \
139	--with-lapack="${LAPACKLIB}"	128	--with-lapack="${LAPACKLIB}" \
		129	--enable-BLAS-shlib \
		130	--enable-memory-profiling
140		131
141	TCLTK_IMPLIES= X11	132	TCLTK_IMPLIES= X11
142	TCLTK_USES= tcl tk:84+	133	TCLTK_USES= tcl tk:84+
143	TCLTK_CONFIGURE_WITH= tcltk	134	TCLTK_CONFIGURE_WITH= tcltk
144		135
145	THREADS_CONFIGURE_ON= --enable-threads=posix
146	THREADS_CONFIGURE_OFF= --disable-threads
147
148	TIFF_IMPLIES= X11	136	TIFF_IMPLIES= X11
149	TIFF_LIB_DEPENDS= libtiff.so:graphics/tiff	137	TIFF_LIB_DEPENDS= libtiff.so:graphics/tiff
150	TIFF_CONFIGURE_WITH= libtiff	138	TIFF_CONFIGURE_WITH= libtiff
Lines 160-228 Link Here
160	RBLAS_SOVERSION="${RBLAS_SOVERSION}" \	148	RBLAS_SOVERSION="${RBLAS_SOVERSION}" \
161	RLAPACK_SOVERSION="${RLAPACK_SOVERSION}"	149	RLAPACK_SOVERSION="${RLAPACK_SOVERSION}"
162		150
163	.include "compiler.mk"
164	.include <bsd.port.options.mk>	151	.include <bsd.port.options.mk>
165		152
166	.if ${OSVERSION} > 1000052 && \	153	.if ${OSVERSION} < 1000015
167	(${ARCH} == amd64 \|\| ${ARCH} == i386 \|\| ${ARCH} == ia64 \|\| ${ARCH} == pc98 \|\| \	154	USE_GCC= yes
168	${ARCH} == sparc64)
169	.for i in coshl erfcl erfl lgammal powl sinhl tanhl tgammal
170	CFLAGS+= -fno-builtin-${i}
171	LDFLAGS+= -fno-builtin-${i}
172	.endfor
173	.endif	155	.endif
174		156
175	post-patch:	157	post-patch:
176	.if !${PORT_OPTIONS:MMISSING}
177	.if ${OSVERSION} < 1000016
178	@${REINPLACE_CMD} -e \
179	's/# define EXP expl/# define EXP(x) (long double)expq((__float128)(x))/' \
180	${WRKSRC}/src/nmath/pnchisq.c \
181	${WRKSRC}/src/nmath/pgamma.c
182	@${REINPLACE_CMD} -e \
183	's/# define LOG logl/# define LOG(x) (long double)logq((__float128)(x))/' \
184	${WRKSRC}/src/nmath/pnchisq.c \
185	${WRKSRC}/src/nmath/pgamma.c
186	.endif
187	.if ${OSVERSION} < 1000034
188	@${REINPLACE_CMD} -Ee 's/(log)(1p)?l\(/(long double)\1\2q((__float128)/'\
189	${WRKSRC}/src/nmath/dnbeta.c \
190	${WRKSRC}/src/nmath/pnbeta.c
191	.endif
192	@${REINPLACE_CMD} -Ee \
193	's/powl\((.*)(long double)/(long double)powq((__float128)\1__float128/' \
194	${WRKSRC}/src/main/format.c
195	.else # !PORT_OPTIONS:MMISSING
196	.if ${OSVERSION} > 1000052 && \
197	(${ARCH} == amd64 \|\| ${ARCH} == i386 \|\| ${ARCH} == ia64 \|\| ${ARCH} == pc98 \|\| \
198	${ARCH} == sparc64)
199	@${REINPLACE_CMD} -e '\\|^FLIBS="$$ac_cv_f77_libs"\|s\|"\|&${LIBM} \|' \
200	${WRKSRC}/configure
201	.endif
202	@${REINPLACE_CMD} -e \
203	'\\|#[[:blank:]]include[[:blank:]]<complex.h>\|{x;s\|^.*$$\|#include "missing_complex.h"\|;H;x;}' \
204	${WRKSRC}/src/main/complex.c
205	.endif # !PORT_OPTIONS:MMISSING
206	@${REINPLACE_CMD} -e \
207	'\\|#[[:blank:]]include[[:blank:]]<math.h>\|{x;s\|^.*$$\|#include ${LIBMH}\|;H;x;}'\
208	${WRKSRC}/src/nmath/nmath.h \
209	${WRKSRC}/src/include/Rmath.h0.in
210	@${REINPLACE_CMD} -e 's\|(libdir)/pkgconfig\|(prefix)/libdata/pkgconfig\|g'\	158	@${REINPLACE_CMD} -e 's\|(libdir)/pkgconfig\|(prefix)/libdata/pkgconfig\|g'\
211	${WRKSRC}/src/nmath/standalone/Makefile.in \	159	${WRKSRC}/src/nmath/standalone/Makefile.in \
212	${WRKSRC}/src/unix/Makefile.in	160	${WRKSRC}/src/unix/Makefile.in
213	@${REINPLACE_CMD} -e "s\|/usr/local\|${LOCALBASE}\|g" \	161	@${REINPLACE_CMD} -e "s\|/usr/local\|${LOCALBASE}\|g" \
214	${WRKSRC}/configure \	162	${WRKSRC}/configure
215	${WRKSRC}/src/library/profile/Rprofile.unix \
216	${WRKSRC}/src/scripts/javareconf.in
217		163
218	.if !${PORT_OPTIONS:MMISSING}
219	pre-configure:
220	@if [ ! -f ${_GCC_RUNTIME}/libquadmath.a ] ; then \
221	IGNORE="\n\n\n%s\n\n\n" "libquadmath is not available for your\
222	compiler and architecture: please enable the MISSING option."; \
223	fi
224	.endif
225
226	post-install:	164	post-install:
227	.for L in R Rblas Rlapack	165	.for L in R Rblas Rlapack
228	@if [ -d ${STAGEDIR}${PREFIX}/lib/R/lib ] ; then \	166	@if [ -d ${STAGEDIR}${PREFIX}/lib/R/lib ] ; then \

Lines 1-113 Link Here

(-)files/patch-configure (-113 lines)
1	--- configure.orig 2016-04-25 22:17:08 UTC
2	+++ configure
3	@@ -22470,13 +22470,13 @@ if test "x$ac_cv_lib_mw__mwvalidcheckl"
4	LIBM=-lmw
5	fi
6
7	- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for cos in -lm" >&5
8	-$as_echo_n "checking for cos in -lm... " >&6; }
9	+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for cos in -lquadmath -lquadmath -lm" >&5
10	+$as_echo_n "checking for cos in -lquadmath -lquadmath -lm... " >&6; }
11	if ${ac_cv_lib_m_cos+:} false; then :
12	$as_echo_n "(cached) " >&6
13	else
14	ac_check_lib_save_LIBS=$LIBS
15	-LIBS="-lm $LIBS"
16	+LIBS="-lquadmath -lquadmath -lm $LIBS"
17	cat confdefs.h - <<_ACEOF >conftest.$ac_ext
18	/* end confdefs.h. */
19
20	@@ -22507,18 +22507,18 @@ fi
21	{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_m_cos" >&5
22	$as_echo "$ac_cv_lib_m_cos" >&6; }
23	if test "x$ac_cv_lib_m_cos" = xyes; then :
24	- LIBM="$LIBM -lm"
25	+ LIBM="$LIBM -lquadmath -lquadmath -lm"
26	fi
27
28	;;
29	*)
30	- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for cos in -lm" >&5
31	-$as_echo_n "checking for cos in -lm... " >&6; }
32	+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for cos in -lquadmath -lquadmath -lm" >&5
33	+$as_echo_n "checking for cos in -lquadmath -lquadmath -lm... " >&6; }
34	if ${ac_cv_lib_m_cos+:} false; then :
35	$as_echo_n "(cached) " >&6
36	else
37	ac_check_lib_save_LIBS=$LIBS
38	-LIBS="-lm $LIBS"
39	+LIBS="-lquadmath -lquadmath -lm $LIBS"
40	cat confdefs.h - <<_ACEOF >conftest.$ac_ext
41	/* end confdefs.h. */
42
43	@@ -22549,7 +22549,7 @@ fi
44	{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_m_cos" >&5
45	$as_echo "$ac_cv_lib_m_cos" >&6; }
46	if test "x$ac_cv_lib_m_cos" = xyes; then :
47	- LIBM=-lm
48	+ LIBM="-lquadmath -lquadmath -lm"
49	fi
50
51	;;
52	@@ -22560,13 +22560,13 @@ esac
53	## </NOTE>
54	## AC_CHECK_LIBM computes LIBM but does not add to LIBS, hence we do
55	## the following as well.
56	-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for sin in -lm" >&5
57	-$as_echo_n "checking for sin in -lm... " >&6; }
58	+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for sin in -lquadmath -lquadmath -lm" >&5
59	+$as_echo_n "checking for sin in -lquadmath -lquadmath -lm... " >&6; }
60	if ${ac_cv_lib_m_sin+:} false; then :
61	$as_echo_n "(cached) " >&6
62	else
63	ac_check_lib_save_LIBS=$LIBS
64	-LIBS="-lm $LIBS"
65	+LIBS="-lquadmath -lquadmath -lm $LIBS"
66	cat confdefs.h - <<_ACEOF >conftest.$ac_ext
67	/* end confdefs.h. */
68
69	@@ -22601,7 +22601,7 @@ if test "x$ac_cv_lib_m_sin" = xyes; then
70	#define HAVE_LIBM 1
71	_ACEOF
72
73	- LIBS="-lm $LIBS"
74	+ LIBS="-lquadmath -lquadmath -lm $LIBS"
75
76	fi
77
78	@@ -27958,7 +27958,7 @@ fi
79	## if nothing was obtained for SHLIB_CXXLDFLAGS.
80	##
81	## Note also that some systems (formerly AIX) do not allow for unresolved
82	-## symbols at link time. For such systems, we link against -lm (in case
83	+## symbols at link time. For such systems, we link against -lquadmath -lm (in case
84	## it exists) when building a shlib module via SHLIB_LIBADD.
85
86	main_ld="${CC}"
87	@@ -30147,7 +30147,7 @@ if ${ac_cv_lib_rt_clock_gettime+:} false
88	$as_echo_n "(cached) " >&6
89	else
90	ac_check_lib_save_LIBS=$LIBS
91	-LIBS="-lrt $LIBS"
92	+LIBS="$LIBS"
93	cat confdefs.h - <<_ACEOF >conftest.$ac_ext
94	/* end confdefs.h. */
95
96	@@ -30190,7 +30190,7 @@ if test "x$ac_cv_lib_rt_clock_gettime" =
97	#define HAVE_LIBRT 1
98	_ACEOF
99
100	- LIBS="-lrt $LIBS"
101	+ LIBS="$LIBS"
102
103	fi
104
105	@@ -35109,7 +35109,7 @@ fi
106	## Part 2. Try finding the tk library.
107	if test -n "${TK_CONFIG}"; then
108	. ${TK_CONFIG}
109	- TCLTK_LIBS="${TCLTK_LIBS} ${TK_LIB_SPEC} ${TK_XLIBSW}"
110	+ TCLTK_LIBS="${TCLTK_LIBS} ${TK_LIB_SPEC} ${TK_XLIBSW} ${TCL_LD_FLAGS}"
111	else
112	{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for Tk_Init in -ltk" >&5
113	$as_echo_n "checking for Tk_Init in -ltk... " >&6; }

Lines 1-22 Link Here

(-)files/patch-src_extra_tre_tre-internal.h (-16 / +4 lines)
1	--- src/extra/tre/tre-internal.h.orig 2016-05-05 10:54:54 UTC	1	--- src/extra/tre/tre-internal.h.orig 2016-07-23 16:50:17 UTC
2	+++ src/extra/tre/tre-internal.h	2	+++ src/extra/tre/tre-internal.h
3	@@ -17,6 +17,7 @@	3	@@ -18,6 +18,7 @@
4	#include <wctype.h>
5	#endif /* !HAVE_WCTYPE_H */	4	#endif /* !HAVE_WCTYPE_H */
6		5
7	+#include <limits.h>
8	#include <ctype.h>	6	#include <ctype.h>
		7	+#include <stdint.h>
9	#include "tre.h"	8	#include "tre.h"
10		9
11	@@ -47,7 +48,11 @@	10	#ifdef TRE_DEBUG
12	#ifdef TRE_WCHAR
13
14	/* Wide characters. */
15	+#if WCHAR_MAX <= INT_MAX
16	typedef wint_t tre_cint_t;
17	+#else /* WCHAR_MAX > INT_MAX */
18	+#define TRE_CHAR_MAX INT_MAX
19	+#endif
20	/* Workaround problem seen on AIX, (2010 & 2015), e.g.,
21	https://stat.ethz.ch/pipermail/r-devel/2015-October/071902.html
22	WCHAR_MAX = UINT32_MAX on AIX and that is "not possible to work"