Attachment #183205 for bug #219776

Lines 3-9 Link Here

(-)math/R/Makefile (-1 / +8 lines)
3		3
4	PORTNAME= R	4	PORTNAME= R
5	PORTVERSION= 3.4.0	5	PORTVERSION= 3.4.0
6	PORTREVISION= 0	6	PORTREVISION= 1
7	CATEGORIES= math lang	7	CATEGORIES= math lang
8	MASTER_SITES= CRAN/src/base/R-${PORTVERSION:C\|\..*\|\|}	8	MASTER_SITES= CRAN/src/base/R-${PORTVERSION:C\|\..*\|\|}
9		9
Lines 26-31 Link Here
26	perl5 readline	26	perl5 readline
27		27
28	USE_PERL5= build	28	USE_PERL5= build
		29	USE_LDCONFIG= ${PREFIX}/lib/R/lib
29		30
30	OPTIONS_DEFINE= ICU INFO LDOUBLE LETTER LIBR MEMPROF NLS RPROF X11	31	OPTIONS_DEFINE= ICU INFO LDOUBLE LETTER LIBR MEMPROF NLS RPROF X11
31	OPTIONS_GROUP= NEEDGCC NEEDX11	32	OPTIONS_GROUP= NEEDGCC NEEDX11
Lines 120-125 Link Here
120		121
121	post-patch:	122	post-patch:
122	@${REINPLACE_CMD} -e "s\|/usr/local\|${LOCALBASE}\|g" ${WRKSRC}/configure	123	@${REINPLACE_CMD} -e "s\|/usr/local\|${LOCALBASE}\|g" ${WRKSRC}/configure
		124	@${REINPLACE_CMD} "s\|@LIBR_LDFLAGS@\|-Wl,-soname,libR.so\|" \
		125	${WRKSRC}/src/main/Makefile.in
		126	@${REINPLACE_CMD} "/LIBADD/ s\|@RBLAS_LDFLAGS@\|-Wl,-soname,libRblas.so\|" \
		127	${WRKSRC}/src/extra/blas/Makefile.in
		128	@${REINPLACE_CMD} "s\|@RLAPACK_LDFLAGS@\|-Wl,-soname,libRlapack.so\|" \
		129	${WRKSRC}/src/modules/lapack/Makefile.in
123		130
124	.include <bsd.port.pre.mk>	131	.include <bsd.port.pre.mk>
125	.include "compiler.mk"	132	.include "compiler.mk"

Lines 2-8 Link Here

(-)math/cantor/Makefile (-3 / +2 lines)
2		2
3	PORTNAME= cantor	3	PORTNAME= cantor
4	PORTVERSION= ${KDE4_VERSION}	4	PORTVERSION= ${KDE4_VERSION}
5	PORTREVISION= 5	5	PORTREVISION= 6
6	CATEGORIES= math kde kde-kde4	6	CATEGORIES= math kde kde-kde4
7		7
8	MAINTAINER= kde@FreeBSD.org	8	MAINTAINER= kde@FreeBSD.org
Lines 32-39 Link Here
32	OCTAVE_RUN_DEPENDS= octave:math/octave	32	OCTAVE_RUN_DEPENDS= octave:math/octave
33		33
34	R_DESC= Build R backend and install R	34	R_DESC= Build R backend and install R
35	R_BUILD_DEPENDS= R:math/R	35	R_LIB_DEPENDS= libR.so:math/R
36	R_RUN_DEPENDS= R:math/R
37	# Required to set CFLAGS for -lgfortran.	36	# Required to set CFLAGS for -lgfortran.
38	R_USES= fortran	37	R_USES= fortran
39	R_CMAKE_OFF= -DWITH_R:BOOL=FALSE	38	R_CMAKE_OFF= -DWITH_R:BOOL=FALSE





PORTNAME=	rkward
PORTVERSION=	0.6.5
PORTREVISION=	5
CATEGORIES=	math
MASTER_SITES=	KDE/stable/${PORTNAME}/${PORTVERSION}/src
PKGNAMESUFFIX=	-kde4


LICENSE=	GPLv2

LIB_DEPENDS=	libR.so:math/R \
		libsoprano.so:textproc/soprano
RUN_DEPENDS=	${KDE_PREFIX}/lib/kde4/katepart.so:editors/kate
		${KDE_PREFIX}/lib/kde4/katepart.so:editors/kate

USES=		cmake gettext fortran kde:4 php:cli shared-mime-info
USE_QT4=	corelib dbus gui qmake_build moc_build network phonon rcc_build	\





PORTNAME=	rpy
PORTVERSION=	1.0.3
PORTREVISION=	36
CATEGORIES=	math
MASTER_SITES=	SF


LICENSE=	GPLv2 LGPL21 MPL
LICENSE_COMB=	dual

BUILD_DEPENDS=	${PYNUMPY}
LIB_DEPENDS=	libR.so:math/R
RUN_DEPENDS=	${PYNUMPY}
		R:math/R

USES=		python
USE_PYTHON=	distutils autoplist





PORTNAME=	rpy2
PORTVERSION=	2.7.8
PORTREVISION=	5
CATEGORIES=	math
MASTER_SITES=	CHEESESHOP



LICENSE=	GPLv2+

BUILD_DEPENDS=	${PYNUMPY}
LIB_DEPENDS=	libR.so:math/R
RUN_DEPENDS=	${PYNUMPY}
		R:math/R

USES=		fortran python readline
USE_PYTHON=	distutils autoplist





PORTNAME=	afni
PORTVERSION=	2015.11.13
PORTREVISION=	5
CATEGORIES=	science biology graphics
MASTER_SITES=	http://www.acadix.biz/Ports/distfiles/



LICENSE=	GPLv2

BUILD_DEPENDS=	gm4:devel/m4
		R:math/R
LIB_DEPENDS=	libexpat.so:textproc/expat2 \
		libf2c.so:lang/f2c \
		libR.so:math/R \
		libgsl.so:math/gsl \
		libnetcdff.so:science/netcdf-fortran \
		libxml2.so:textproc/libxml2 \

RUN_DEPENDS=	endian:sysutils/endian \
		mpeg_encode:multimedia/mpeg_encode \
		ppmtogif:graphics/netpbm \
		qhull:math/qhull5
		R:math/R

CONFLICTS=	im-[0-9]* \
		nifticlib-[0-9]* \

Return to bug 219776

Lines 3-9 Link Here

(-)math/rkward-kde4/Makefile (-5 / +4 lines)
3		3
4	PORTNAME= rkward	4	PORTNAME= rkward
5	PORTVERSION= 0.6.5	5	PORTVERSION= 0.6.5
6	PORTREVISION= 4	6	PORTREVISION= 5
7	CATEGORIES= math	7	CATEGORIES= math
8	MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}/src	8	MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}/src
9	PKGNAMESUFFIX= -kde4	9	PKGNAMESUFFIX= -kde4
Lines 13-22 Link Here
13		13
14	LICENSE= GPLv2	14	LICENSE= GPLv2
15		15
16	BUILD_DEPENDS= ${LOCALBASE}/bin/R:math/R	16	LIB_DEPENDS= libR.so:math/R \
17	LIB_DEPENDS= libsoprano.so:textproc/soprano	17	libsoprano.so:textproc/soprano
18	RUN_DEPENDS= ${LOCALBASE}/bin/R:math/R \	18	RUN_DEPENDS= ${KDE_PREFIX}/lib/kde4/katepart.so:editors/kate
19	${KDE_PREFIX}/lib/kde4/katepart.so:editors/kate
20		19
21	USES= cmake gettext fortran kde:4 php:cli shared-mime-info	20	USES= cmake gettext fortran kde:4 php:cli shared-mime-info
22	USE_QT4= corelib dbus gui qmake_build moc_build network phonon rcc_build \	21	USE_QT4= corelib dbus gui qmake_build moc_build network phonon rcc_build \

Lines 3-8 Link Here

(-)math/rkward-kde4/pkg-plist (+2 lines)
3	lib/R/library/rkward/DESCRIPTION	3	lib/R/library/rkward/DESCRIPTION
4	lib/R/library/rkward/INDEX	4	lib/R/library/rkward/INDEX
5	lib/R/library/rkward/Meta/Rd.rds	5	lib/R/library/rkward/Meta/Rd.rds
		6	lib/R/library/rkward/Meta/features.rds
6	lib/R/library/rkward/Meta/hsearch.rds	7	lib/R/library/rkward/Meta/hsearch.rds
7	lib/R/library/rkward/Meta/links.rds	8	lib/R/library/rkward/Meta/links.rds
8	lib/R/library/rkward/Meta/nsInfo.rds	9	lib/R/library/rkward/Meta/nsInfo.rds
Lines 22-27 Link Here
22	lib/R/library/rkwardtests/DESCRIPTION	23	lib/R/library/rkwardtests/DESCRIPTION
23	lib/R/library/rkwardtests/INDEX	24	lib/R/library/rkwardtests/INDEX
24	lib/R/library/rkwardtests/Meta/Rd.rds	25	lib/R/library/rkwardtests/Meta/Rd.rds
		26	lib/R/library/rkwardtests/Meta/features.rds
25	lib/R/library/rkwardtests/Meta/hsearch.rds	27	lib/R/library/rkwardtests/Meta/hsearch.rds
26	lib/R/library/rkwardtests/Meta/links.rds	28	lib/R/library/rkwardtests/Meta/links.rds
27	lib/R/library/rkwardtests/Meta/nsInfo.rds	29	lib/R/library/rkwardtests/Meta/nsInfo.rds

Lines 3-9 Link Here

(-)math/rpy/Makefile (-5 / +4 lines)
3		3
4	PORTNAME= rpy	4	PORTNAME= rpy
5	PORTVERSION= 1.0.3	5	PORTVERSION= 1.0.3
6	PORTREVISION= 35	6	PORTREVISION= 36
7	CATEGORIES= math	7	CATEGORIES= math
8	MASTER_SITES= SF	8	MASTER_SITES= SF
9		9
Lines 13-22 Link Here
13	LICENSE= GPLv2 LGPL21 MPL	13	LICENSE= GPLv2 LGPL21 MPL
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	BUILD_DEPENDS= ${PYNUMPY} \	16	BUILD_DEPENDS= ${PYNUMPY}
17	R:math/R	17	LIB_DEPENDS= libR.so:math/R
18	RUN_DEPENDS= ${PYNUMPY} \	18	RUN_DEPENDS= ${PYNUMPY}
19	R:math/R
20		19
21	USES= python	20	USES= python
22	USE_PYTHON= distutils autoplist	21	USE_PYTHON= distutils autoplist

Lines 3-9 Link Here

(-)math/rpy2/Makefile (-5 / +4 lines)
3		3
4	PORTNAME= rpy2	4	PORTNAME= rpy2
5	PORTVERSION= 2.7.8	5	PORTVERSION= 2.7.8
6	PORTREVISION= 4	6	PORTREVISION= 5
7	CATEGORIES= math	7	CATEGORIES= math
8	MASTER_SITES= CHEESESHOP	8	MASTER_SITES= CHEESESHOP
9		9
Lines 12-21 Link Here
12		12
13	LICENSE= GPLv2+	13	LICENSE= GPLv2+
14		14
15	BUILD_DEPENDS= ${PYNUMPY} \	15	BUILD_DEPENDS= ${PYNUMPY}
16	R:math/R	16	LIB_DEPENDS= libR.so:math/R
17	RUN_DEPENDS= ${PYNUMPY} \	17	RUN_DEPENDS= ${PYNUMPY}
18	R:math/R
19		18
20	USES= fortran python readline	19	USES= fortran python readline
21	USE_PYTHON= distutils autoplist	20	USE_PYTHON= distutils autoplist

Lines 11-17 Link Here

(-)science/afni/Makefile (-5 / +4 lines)
11		11
12	PORTNAME= afni	12	PORTNAME= afni
13	PORTVERSION= 2015.11.13	13	PORTVERSION= 2015.11.13
14	PORTREVISION= 4	14	PORTREVISION= 5
15	CATEGORIES= science biology graphics	15	CATEGORIES= science biology graphics
16	MASTER_SITES= http://www.acadix.biz/Ports/distfiles/	16	MASTER_SITES= http://www.acadix.biz/Ports/distfiles/
17		17
Lines 20-29 Link Here
20		20
21	LICENSE= GPLv2	21	LICENSE= GPLv2
22		22
23	BUILD_DEPENDS= gm4:devel/m4 \	23	BUILD_DEPENDS= gm4:devel/m4
24	R:math/R
25	LIB_DEPENDS= libexpat.so:textproc/expat2 \	24	LIB_DEPENDS= libexpat.so:textproc/expat2 \
26	libf2c.so:lang/f2c \	25	libf2c.so:lang/f2c \
		26	libR.so:math/R \
27	libgsl.so:math/gsl \	27	libgsl.so:math/gsl \
28	libnetcdff.so:science/netcdf-fortran \	28	libnetcdff.so:science/netcdf-fortran \
29	libxml2.so:textproc/libxml2 \	29	libxml2.so:textproc/libxml2 \
Lines 31-38 Link Here
31	RUN_DEPENDS= endian:sysutils/endian \	31	RUN_DEPENDS= endian:sysutils/endian \
32	mpeg_encode:multimedia/mpeg_encode \	32	mpeg_encode:multimedia/mpeg_encode \
33	ppmtogif:graphics/netpbm \	33	ppmtogif:graphics/netpbm \
34	qhull:math/qhull5 \	34	qhull:math/qhull5
35	R:math/R
36		35
37	CONFLICTS= im-[0-9]* \	36	CONFLICTS= im-[0-9]* \
38	nifticlib-[0-9]* \	37	nifticlib-[0-9]* \