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(-)seqan-apps/distinfo (-3 / +3 lines)
Lines 1-3 Link Here
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TIMESTAMP = 1473848209
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TIMESTAMP = 1517833288
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SHA256 (seqan-seqan-seqan-v2.2.0_GH0.tar.gz) = 6add074932c2723ef1fb658c88f906bdd6ced1fc34cb16a7410251ffc4cb8cc8
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SHA256 (seqan-seqan-seqan-v2.4.0_GH0.tar.gz) = d7084d17729214003e84818e0280a16f223c8f1c6a30eeef040c27e0c0047bd7
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SIZE (seqan-seqan-seqan-v2.2.0_GH0.tar.gz) = 110936119
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SIZE (seqan-seqan-seqan-v2.4.0_GH0.tar.gz) = 109626901
(-)seqan-apps/Makefile (-11 / +9 lines)
Lines 2-10 Link Here
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# $FreeBSD: head/biology/seqan-apps/Makefile 459315 2018-01-18 04:11:02Z jbeich $
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# $FreeBSD: head/biology/seqan-apps/Makefile 459315 2018-01-18 04:11:02Z jbeich $
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PORTNAME=	seqan-apps
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PORTNAME=	seqan-apps
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PORTVERSION=	2.2.0
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PORTVERSION=	2.4.0
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DISTVERSIONPREFIX=	seqan-v
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DISTVERSIONPREFIX=	seqan-v
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PORTREVISION=	9
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CATEGORIES=	biology
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CATEGORIES=	biology
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MAINTAINER=	h2+fbsdports@fsfe.org
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MAINTAINER=	h2+fbsdports@fsfe.org
Lines 15-36 Link Here
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BUILD_DEPENDS=	boost-libs>0:devel/boost-libs
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BUILD_DEPENDS=	boost-libs>0:devel/boost-libs
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BROKEN_aarch64=		fails to compile: Error: unknown mnemonic rep -- rep
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BROKEN_armv6=		fails to compile: Error: bad instruction rep
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BROKEN_armv7=		fails to compile: Error: bad instruction rep
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BROKEN_powerpc64=	fails to compile: Error: unrecognized opcode: rep
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USE_GITHUB=	yes
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GH_ACCOUNT=	seqan
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GH_PROJECT=	seqan
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# once #199603 is resolved, do the following instead of USE_GCC
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# once #199603 is resolved, do the following instead of USE_GCC
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# USES=		cmake:outsource compiler:openmp,c++14-lang
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# USES=		cmake:outsource compiler:openmp,c++14-lang
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USES=		cmake:outsource
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USES=		cmake:outsource
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CMAKE_ARGS=	-DSEQAN_BUILD_SYSTEM="SEQAN_RELEASE_APPS"
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CMAKE_ARGS=	-DSEQAN_BUILD_SYSTEM="SEQAN_RELEASE_APPS"
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USE_GITHUB=	yes
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GH_ACCOUNT=	seqan
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GH_PROJECT=	seqan
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USE_GCC=	yes
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USE_GCC=	yes
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OPTIONS_DEFINE=			OPTIMIZED_CFLAGS
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OPTIMIZED_CFLAGS_DESC= 		Add machine code for SSE4 and POPCNT instructions.
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OPTIMIZED_CFLAGS_CMAKE_ON=	-DSEQAN_ARCH_SSE4:BOOL=true
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.include <bsd.port.pre.mk>
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.include <bsd.port.pre.mk>
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.if ${ARCH} == "i386"
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.if ${ARCH} == "i386"
(-)seqan-apps/pkg-plist (-1 / +1 lines)
Lines 48-53 Link Here
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bin/tree_recon
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bin/tree_recon
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bin/yara_indexer
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bin/yara_indexer
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bin/yara_mapper
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bin/yara_mapper
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man/man1/sak.1.gz
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share/doc/alf/LICENSE
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share/doc/alf/LICENSE
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share/doc/alf/README
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share/doc/alf/README
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share/doc/alf/example/small.fasta
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share/doc/alf/example/small.fasta
Lines 117-123 Link Here
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share/doc/sak/LICENSE
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share/doc/sak/LICENSE
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share/doc/sak/README
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share/doc/sak/README
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share/doc/sak/README.sak.txt
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share/doc/sak/README.sak.txt
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share/doc/sak/man/sak.1
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share/doc/sam2matrix/LICENSE
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share/doc/sam2matrix/LICENSE
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share/doc/sam2matrix/README
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share/doc/sam2matrix/README
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share/doc/samcat/LICENSE
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share/doc/samcat/LICENSE

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