Attachment #194182 for bug #228908

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# $FreeBSD$

PORTNAME=	htslib
DISTVERSION=	1.8
CATEGORIES=	biology devel

MAINTAINER=	cartwright@asu.edu


TEST_DEPENDS=	bash:shells/bash

USES=		autoreconf gmake pathfix perl5 shebangfix ssl
USE_GITHUB=	yes
GH_ACCOUNT=	samtools

USES=		autoreconf gmake pathfix perl5 shebangfix
USE_PERL5=	test
USE_LDCONFIG=	yes
GNU_CONFIGURE=	yes

Lines 1-3 Link Here

(-)biology/htslib/distinfo (-3 / +3 lines)
1	TIMESTAMP = 1508301522	1	TIMESTAMP = 1528766078
2	SHA256 (samtools-htslib-1.6_GH0.tar.gz) = 4215c9153c27603cbaaf542f2ec128c5e839380d6df6edd4dbf67955170740c6	2	SHA256 (samtools-htslib-1.8_GH0.tar.gz) = ad52105c0f9ce6474c8f5d2f208b8e71982436ee1ca5225162932b08aff48b23
3	SIZE (samtools-htslib-1.6_GH0.tar.gz) = 1155672	3	SIZE (samtools-htslib-1.8_GH0.tar.gz) = 1262465

Lines 2-5 Link Here

(-)biology/htslib/pkg-descr (-1 / +1 lines)
2	formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing	2	formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
3	data. It is the core library used by samtools and bcftools.	3	data. It is the core library used by samtools and bcftools.
4		4
5	WWW: http://www.htslib.org/	5	WWW: https://www.htslib.org/

Lines 32-37 Link Here

(-)biology/htslib/pkg-plist (+1 lines)
32	lib/libhts.so.%%PORTVERSION%%	32	lib/libhts.so.%%PORTVERSION%%
33	lib/libhts.so.2	33	lib/libhts.so.2
34	libdata/pkgconfig/htslib.pc	34	libdata/pkgconfig/htslib.pc
		35	man/man1/bgzip.1.gz
35	man/man1/htsfile.1.gz	36	man/man1/htsfile.1.gz
36	man/man1/tabix.1.gz	37	man/man1/tabix.1.gz
37	man/man5/faidx.5.gz	38	man/man5/faidx.5.gz

Return to bug 228908

Lines 2-8 Link Here

(-)biology/htslib/Makefile (-3 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= htslib	4	PORTNAME= htslib
5	PORTVERSION= 1.6	5	DISTVERSION= 1.8
6	CATEGORIES= biology devel	6	CATEGORIES= biology devel
7		7
8	MAINTAINER= cartwright@asu.edu	8	MAINTAINER= cartwright@asu.edu
Lines 14-23 Link Here
14		14
15	TEST_DEPENDS= bash:shells/bash	15	TEST_DEPENDS= bash:shells/bash
16		16
		17	USES= autoreconf gmake pathfix perl5 shebangfix ssl
17	USE_GITHUB= yes	18	USE_GITHUB= yes
18	GH_ACCOUNT= samtools	19	GH_ACCOUNT= samtools
19
20	USES= autoreconf gmake pathfix perl5 shebangfix
21	USE_PERL5= test	20	USE_PERL5= test
22	USE_LDCONFIG= yes	21	USE_LDCONFIG= yes
23	GNU_CONFIGURE= yes	22	GNU_CONFIGURE= yes