Attachment #232706 for bug #262796

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# Created by: thierry@pompo.net

PORTNAME=	httpstan
PORTVERSION=	4.7.0
CATEGORIES=	math python www
PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}

MAINTAINER=	thierry@FreeBSD.org
COMMENT=	HTTP interface to Stan, a package for Bayesian inference

LICENSE=	ISCL

BUILD_DEPENDS=	stan>0:math/stan	\
		rapidjson>0:devel/rapidjson	\
		${NONEXISTENT}:devel/py-pybind11:patch
LIB_DEPENDS=	libboost_thread.so:devel/boost-libs	\
		libsundials_ida.so:math/sundials	\
		libtbb.so:devel/onetbb
RUN_DEPENDS=	stan>0:math/stan	\
		stanc:devel/stanc3	\
		rapidjson>0:devel/rapidjson	\
		${PYTHON_PKGNAMEPREFIX}aiohttp>0:www/py-aiohttp@${PY_FLAVOR}\
		${PYTHON_PKGNAMEPREFIX}webargs>0:www/py-webargs@${PY_FLAVOR}\
		${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR}
TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR}\
		${PYTHON_PKGNAMEPREFIX}apispec>0:devel/py-apispec@${PY_FLAVOR}\
		${PYTHON_PKGNAMEPREFIX}pytest-asyncio>0:devel/py-pytest-asyncio@${PY_FLAVOR}

USE_GITHUB=	yes
GH_ACCOUNT=	stan-dev

USES=		compiler:c++14-lang eigen:3,run gmake localbase python:3.7+

ALL_TARGET=	httpstan/stan_services.o
CFLAGS+=		-DTBB_INTERFACE_NEW -I${LOCALBASE}/include/eigen3
MAKE_ENV=	HTTPSTAN_EXTRA_COMPILE_ARGS="${CFLAGS} -std=c++14"

INC_SUNDIALS=	arkode cvode cvodes ida idas kinsol nvector sundials	\
		sunlinsol sunmatrix sunnonlinsol

pre-build:
	${MKDIR} ${WRKSRC}/${PORTNAME}/include
	${LN} -sf ${LOCALBASE}/include/boost ${WRKSRC}/${PORTNAME}/include/
	${LN} -sf ${LOCALBASE}/include/eigen3/Eigen ${WRKSRC}/${PORTNAME}/include/
	${CP} -R ${WRKDIR}/../../../devel/py-pybind11/work-py${PYTHON_SUFFIX}/pybind11-*/pybind11/include/pybind11	\
		${WRKSRC}/${PORTNAME}/include/
	${LN} -sf ${LOCALBASE}/include/rapidjson ${WRKSRC}/${PORTNAME}/include/
	${LN} -sf ${LOCALBASE}/include/stan ${WRKSRC}/${PORTNAME}/include/
.for inc in ${INC_SUNDIALS}
	${LN} -sf ${LOCALBASE}/include/${inc} ${WRKSRC}/${PORTNAME}/include/
.endfor
	${LN} -sf ${LOCALBASE}/include/tbb ${WRKSRC}/${PORTNAME}/include/
	${LN} -sf ${LOCALBASE}/bin/stanc ${WRKSRC}/${PORTNAME}/
	${REINPLACE_CMD} -e 's|python3|${PYTHON_CMD}|' ${WRKSRC}/${MAKEFILE}

do-install:
	${MKDIR} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
	cd ${WRKSRC} && \
	${COPYTREE_SHARE} ${PORTNAME} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}

do-test: install
	(cd ${TEST_WRKSRC} && py.test)

.include <bsd.port.mk>

Added Link Here

(-)b/math/py-httpstan/distinfo (+3 lines)
1	TIMESTAMP = 1646383866
2	SHA256 (stan-dev-httpstan-4.7.0_GH0.tar.gz) = efc90383c7888cafe4d99d41e1b637170bb725642ee61feab9e72c17f9d53874
3	SIZE (stan-dev-httpstan-4.7.0_GH0.tar.gz) = 48605

Added Link Here

(-)b/math/py-httpstan/files/patch-Makefile (+11 lines)
1	--- Makefile.orig 2022-02-14 23:19:47 UTC
2	+++ Makefile
3	@@ -219,7 +219,7 @@ HTTPSTAN_EXTRA_COMPILE_ARGS ?= -O3 -std=c++14
4	HTTPSTAN_MACROS = -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DSTAN_THREADS -D_REENTRANT -D_GLIBCXX_USE_CXX11_ABI=0
5	HTTPSTAN_INCLUDE_DIRS = -Ihttpstan -Ihttpstan/include
6
7	-httpstan/stan_services.o: httpstan/stan_services.cpp httpstan/socket_logger.hpp httpstan/socket_writer.hpp \| $(INCLUDES)
8	+httpstan/stan_services.o: httpstan/stan_services.cpp httpstan/socket_logger.hpp httpstan/socket_writer.hpp
9
10	httpstan/stan_services.o:
11	# -fvisibility=hidden required by pybind11




An HTTP 1.1 interface to the Stan C++ package, httpstan is a shim that allows
users to interact with the Stan C++ library using a REST API. The package is
intended for use as a universal backend for frontends which know how to make
HTTP requests. The primary audience for this package is developers.

In addition to providing the essential functionality of the command-line
interface to Stan (CmdStan) over HTTP, httpstan provides the following features:

    Automatic caching of compiled Stan models
    Automatic caching of samples from Stan models
    Parallel sampling

Documentation: https://httpstan.readthedocs.org.

WWW: https://mc-stan.org/
WWW: https://pypi.org/project/httpstan/
WWW: https://github.com/stan-dev/httpstan




%%PYTHON_SITELIBDIR%%/httpstan/__init__.py
%%PYTHON_SITELIBDIR%%/httpstan/__main__.py
%%PYTHON_SITELIBDIR%%/httpstan/app.py
%%PYTHON_SITELIBDIR%%/httpstan/build_ext.py
%%PYTHON_SITELIBDIR%%/httpstan/cache.py
%%PYTHON_SITELIBDIR%%/httpstan/compile.py
%%PYTHON_SITELIBDIR%%/httpstan/config.py
%%PYTHON_SITELIBDIR%%/httpstan/empty.cpp
%%PYTHON_SITELIBDIR%%/httpstan/fits.py
%%PYTHON_SITELIBDIR%%/httpstan/include/Eigen
%%PYTHON_SITELIBDIR%%/httpstan/include/arkode
%%PYTHON_SITELIBDIR%%/httpstan/include/boost
%%PYTHON_SITELIBDIR%%/httpstan/include/cvode
%%PYTHON_SITELIBDIR%%/httpstan/include/cvodes
%%PYTHON_SITELIBDIR%%/httpstan/include/ida
%%PYTHON_SITELIBDIR%%/httpstan/include/idas
%%PYTHON_SITELIBDIR%%/httpstan/include/kinsol
%%PYTHON_SITELIBDIR%%/httpstan/include/nvector
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/attr.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/buffer_info.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/cast.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/chrono.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/common.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/complex.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/class.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/common.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/descr.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/init.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/internals.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/type_caster_base.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/typeid.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/eigen.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/embed.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/eval.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/functional.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/gil.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/iostream.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/numpy.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/operators.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/options.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/pybind11.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/pytypes.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/stl.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/stl/filesystem.h
%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/stl_bind.h
%%PYTHON_SITELIBDIR%%/httpstan/include/rapidjson
%%PYTHON_SITELIBDIR%%/httpstan/include/stan
%%PYTHON_SITELIBDIR%%/httpstan/include/sundials
%%PYTHON_SITELIBDIR%%/httpstan/include/sunlinsol
%%PYTHON_SITELIBDIR%%/httpstan/include/sunmatrix
%%PYTHON_SITELIBDIR%%/httpstan/include/sunnonlinsol
%%PYTHON_SITELIBDIR%%/httpstan/include/tbb
%%PYTHON_SITELIBDIR%%/httpstan/models.py
%%PYTHON_SITELIBDIR%%/httpstan/openapi.py
%%PYTHON_SITELIBDIR%%/httpstan/routes.py
%%PYTHON_SITELIBDIR%%/httpstan/schemas.py
%%PYTHON_SITELIBDIR%%/httpstan/services/__init__.py
%%PYTHON_SITELIBDIR%%/httpstan/services/arguments.py
%%PYTHON_SITELIBDIR%%/httpstan/services/cmdstan-help-all.json
%%PYTHON_SITELIBDIR%%/httpstan/services_stub.py
%%PYTHON_SITELIBDIR%%/httpstan/socket_logger.hpp
%%PYTHON_SITELIBDIR%%/httpstan/socket_writer.hpp
%%PYTHON_SITELIBDIR%%/httpstan/stan_services.cpp
%%PYTHON_SITELIBDIR%%/httpstan/stan_services.o
%%PYTHON_SITELIBDIR%%/httpstan/stan.pyi
%%PYTHON_SITELIBDIR%%/httpstan/stanc
%%PYTHON_SITELIBDIR%%/httpstan/utils.py
%%PYTHON_SITELIBDIR%%/httpstan/views.py

Return to bug 262796

Added Link Here

(-)b/math/py-httpstan/Makefile (+64 lines)
1	# Created by: thierry@pompo.net
2
3	PORTNAME= httpstan
4	PORTVERSION= 4.7.0
5	CATEGORIES= math python www
6	PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
7
8	MAINTAINER= thierry@FreeBSD.org
9	COMMENT= HTTP interface to Stan, a package for Bayesian inference
10
11	LICENSE= ISCL
12
13	BUILD_DEPENDS= stan>0:math/stan \
14	rapidjson>0:devel/rapidjson \
15	${NONEXISTENT}:devel/py-pybind11:patch
16	LIB_DEPENDS= libboost_thread.so:devel/boost-libs \
17	libsundials_ida.so:math/sundials \
18	libtbb.so:devel/onetbb
19	RUN_DEPENDS= stan>0:math/stan \
20	stanc:devel/stanc3 \
21	rapidjson>0:devel/rapidjson \
22	${PYTHON_PKGNAMEPREFIX}aiohttp>0:www/py-aiohttp@${PY_FLAVOR}\
23	${PYTHON_PKGNAMEPREFIX}webargs>0:www/py-webargs@${PY_FLAVOR}\
24	${PYTHON_PKGNAMEPREFIX}pybind11>0:devel/py-pybind11@${PY_FLAVOR}
25	TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR}\
26	${PYTHON_PKGNAMEPREFIX}apispec>0:devel/py-apispec@${PY_FLAVOR}\
27	${PYTHON_PKGNAMEPREFIX}pytest-asyncio>0:devel/py-pytest-asyncio@${PY_FLAVOR}
28
29	USE_GITHUB= yes
30	GH_ACCOUNT= stan-dev
31
32	USES= compiler:c++14-lang eigen:3,run gmake localbase python:3.7+
33
34	ALL_TARGET= httpstan/stan_services.o
35	CFLAGS+= -DTBB_INTERFACE_NEW -I${LOCALBASE}/include/eigen3
36	MAKE_ENV= HTTPSTAN_EXTRA_COMPILE_ARGS="${CFLAGS} -std=c++14"
37
38	INC_SUNDIALS= arkode cvode cvodes ida idas kinsol nvector sundials \
39	sunlinsol sunmatrix sunnonlinsol
40
41	pre-build:
42	${MKDIR} ${WRKSRC}/${PORTNAME}/include
43	${LN} -sf ${LOCALBASE}/include/boost ${WRKSRC}/${PORTNAME}/include/
44	${LN} -sf ${LOCALBASE}/include/eigen3/Eigen ${WRKSRC}/${PORTNAME}/include/
45	${CP} -R ${WRKDIR}/../../../devel/py-pybind11/work-py${PYTHON_SUFFIX}/pybind11-*/pybind11/include/pybind11 \
46	${WRKSRC}/${PORTNAME}/include/
47	${LN} -sf ${LOCALBASE}/include/rapidjson ${WRKSRC}/${PORTNAME}/include/
48	${LN} -sf ${LOCALBASE}/include/stan ${WRKSRC}/${PORTNAME}/include/
49	.for inc in ${INC_SUNDIALS}
50	${LN} -sf ${LOCALBASE}/include/${inc} ${WRKSRC}/${PORTNAME}/include/
51	.endfor
52	${LN} -sf ${LOCALBASE}/include/tbb ${WRKSRC}/${PORTNAME}/include/
53	${LN} -sf ${LOCALBASE}/bin/stanc ${WRKSRC}/${PORTNAME}/
54	${REINPLACE_CMD} -e 's\|python3\|${PYTHON_CMD}\|' ${WRKSRC}/${MAKEFILE}
55
56	do-install:
57	${MKDIR} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
58	cd ${WRKSRC} && \
59	${COPYTREE_SHARE} ${PORTNAME} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
60
61	do-test: install
62	(cd ${TEST_WRKSRC} && py.test)
63
64	.include <bsd.port.mk>

Added Link Here

(-)b/math/py-httpstan/pkg-descr (+17 lines)
1	An HTTP 1.1 interface to the Stan C++ package, httpstan is a shim that allows
2	users to interact with the Stan C++ library using a REST API. The package is
3	intended for use as a universal backend for frontends which know how to make
4	HTTP requests. The primary audience for this package is developers.
5
6	In addition to providing the essential functionality of the command-line
7	interface to Stan (CmdStan) over HTTP, httpstan provides the following features:
8
9	Automatic caching of compiled Stan models
10	Automatic caching of samples from Stan models
11	Parallel sampling
12
13	Documentation: https://httpstan.readthedocs.org.
14
15	WWW: https://mc-stan.org/
16	WWW: https://pypi.org/project/httpstan/
17	WWW: https://github.com/stan-dev/httpstan

Added Link Here

(-)b/math/py-httpstan/pkg-plist (-1 / +68 lines)
0	-	1	%%PYTHON_SITELIBDIR%%/httpstan/__init__.py
		2	%%PYTHON_SITELIBDIR%%/httpstan/__main__.py
		3	%%PYTHON_SITELIBDIR%%/httpstan/app.py
		4	%%PYTHON_SITELIBDIR%%/httpstan/build_ext.py
		5	%%PYTHON_SITELIBDIR%%/httpstan/cache.py
		6	%%PYTHON_SITELIBDIR%%/httpstan/compile.py
		7	%%PYTHON_SITELIBDIR%%/httpstan/config.py
		8	%%PYTHON_SITELIBDIR%%/httpstan/empty.cpp
		9	%%PYTHON_SITELIBDIR%%/httpstan/fits.py
		10	%%PYTHON_SITELIBDIR%%/httpstan/include/Eigen
		11	%%PYTHON_SITELIBDIR%%/httpstan/include/arkode
		12	%%PYTHON_SITELIBDIR%%/httpstan/include/boost
		13	%%PYTHON_SITELIBDIR%%/httpstan/include/cvode
		14	%%PYTHON_SITELIBDIR%%/httpstan/include/cvodes
		15	%%PYTHON_SITELIBDIR%%/httpstan/include/ida
		16	%%PYTHON_SITELIBDIR%%/httpstan/include/idas
		17	%%PYTHON_SITELIBDIR%%/httpstan/include/kinsol
		18	%%PYTHON_SITELIBDIR%%/httpstan/include/nvector
		19	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/attr.h
		20	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/buffer_info.h
		21	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/cast.h
		22	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/chrono.h
		23	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/common.h
		24	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/complex.h
		25	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/class.h
		26	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/common.h
		27	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/descr.h
		28	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/init.h
		29	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/internals.h
		30	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/type_caster_base.h
		31	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/detail/typeid.h
		32	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/eigen.h
		33	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/embed.h
		34	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/eval.h
		35	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/functional.h
		36	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/gil.h
		37	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/iostream.h
		38	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/numpy.h
		39	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/operators.h
		40	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/options.h
		41	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/pybind11.h
		42	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/pytypes.h
		43	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/stl.h
		44	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/stl/filesystem.h
		45	%%PYTHON_SITELIBDIR%%/httpstan/include/pybind11/stl_bind.h
		46	%%PYTHON_SITELIBDIR%%/httpstan/include/rapidjson
		47	%%PYTHON_SITELIBDIR%%/httpstan/include/stan
		48	%%PYTHON_SITELIBDIR%%/httpstan/include/sundials
		49	%%PYTHON_SITELIBDIR%%/httpstan/include/sunlinsol
		50	%%PYTHON_SITELIBDIR%%/httpstan/include/sunmatrix
		51	%%PYTHON_SITELIBDIR%%/httpstan/include/sunnonlinsol
		52	%%PYTHON_SITELIBDIR%%/httpstan/include/tbb
		53	%%PYTHON_SITELIBDIR%%/httpstan/models.py
		54	%%PYTHON_SITELIBDIR%%/httpstan/openapi.py
		55	%%PYTHON_SITELIBDIR%%/httpstan/routes.py
		56	%%PYTHON_SITELIBDIR%%/httpstan/schemas.py
		57	%%PYTHON_SITELIBDIR%%/httpstan/services/__init__.py
		58	%%PYTHON_SITELIBDIR%%/httpstan/services/arguments.py
		59	%%PYTHON_SITELIBDIR%%/httpstan/services/cmdstan-help-all.json
		60	%%PYTHON_SITELIBDIR%%/httpstan/services_stub.py
		61	%%PYTHON_SITELIBDIR%%/httpstan/socket_logger.hpp
		62	%%PYTHON_SITELIBDIR%%/httpstan/socket_writer.hpp
		63	%%PYTHON_SITELIBDIR%%/httpstan/stan_services.cpp
		64	%%PYTHON_SITELIBDIR%%/httpstan/stan_services.o
		65	%%PYTHON_SITELIBDIR%%/httpstan/stan.pyi
66	%%PYTHON_SITELIBDIR%%/httpstan/stanc
67	%%PYTHON_SITELIBDIR%%/httpstan/utils.py
68	%%PYTHON_SITELIBDIR%%/httpstan/views.py