Attachment #53920 for bug #81579

Lines 1-3 Link Here

(-)embassy/Makefile (-2 / +13 lines)
		1	# ex:ts=8
1	# New ports collection makefile for: embassy	2	# New ports collection makefile for: embassy
2	# Date created: 1.November.2004	3	# Date created: 1.November.2004
3	# Whom: Fernan Aguero <fernan@iib.unsamn.edu.ar>	4	# Whom: Fernan Aguero <fernan@iib.unsamn.edu.ar>
Lines 6-12 Link Here
6	#	7	#
7		8
8	PORTNAME= embassy	9	PORTNAME= embassy
9	PORTVERSION= 2.9.0	10	PORTVERSION= 2.10.0
10	CATEGORIES= biology	11	CATEGORIES= biology
11	MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \	12	MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \
12	ftp://ftp.es.embnet.org/pub/software/emboss/EMBOSS/ \	13	ftp://ftp.es.embnet.org/pub/software/emboss/EMBOSS/ \
Lines 30-36 Link Here
30	ESIM4 "Align cDNA/EST to genome" on \	31	ESIM4 "Align cDNA/EST to genome" on \
31	HMMER "HMM alignment and searches" on \	32	HMMER "HMM alignment and searches" on \
32	MEME "Motif detection" on \	33	MEME "Motif detection" on \
33	MSE "Sequence editor" on \	34	MSE "A multiple sequence screen editor" on \
34	PHYLIP "Phylogeny inference" on \	35	PHYLIP "Phylogeny inference" on \
35	TOPO "Transmembrane display" on	36	TOPO "Transmembrane display" on
36		37
Lines 73-78 Link Here
73	${CHOWN} -R 0:0 ${${app}_WRKSRC}; \	74	${CHOWN} -R 0:0 ${${app}_WRKSRC}; \
74	fi	75	fi
75	.endfor	76	.endfor
		77
		78	.if defined(WITH_DOMAINATRIX)
		79	pre-configure::
		80	@${PATCH} ${PATCH_ARGS} < ${PATCHDIR}/domainatrix-patch-Makefile.in
		81	.endif
		82
		83	.if defined(WITH_EMNU)
		84	pre-configure::
		85	@${PATCH} ${PATCH_ARGS} < ${PATCHDIR}/emnu-patch-Makefile.in
		86	.endif
76		87
77	do-configure:	88	do-configure:
78	.for app in ${APPLIST}	89	.for app in ${APPLIST}




MD5 (embassy/DOMAINATRIX-1.0.0.tar.gz) = 9deff6f5bf526408f0f02c002488ad59
SIZE (embassy/DOMAINATRIX-1.0.0.tar.gz) = 471604
MD5 (embassy/EMNU-1.05.tar.gz) = df29ae1e8201081f4413862d7f10edb5
SIZE (embassy/EMNU-1.05.tar.gz) = 339355
MD5 (embassy/ESIM4-1.0.0.tar.gz) = 3b8137b3b8ff0e84bc6e1243c7343578
SIZE (embassy/ESIM4-1.0.0.tar.gz) = 378342
MD5 (embassy/HMMER-2.1.1.tar.gz) = 56816b26a43c8542f7d12f9069e77843
SIZE (embassy/HMMER-2.1.1.tar.gz) = 562855
MD5 (embassy/MEME-2.3.1.tar.gz) = a9fb38886665f3f654da1244c2e1476f
SIZE (embassy/MEME-2.3.1.tar.gz) = 421914
MD5 (embassy/MSE-1.0.0.tar.gz) = b666681aceb9f07f968585f2edc4a039
SIZE (embassy/MSE-1.0.0.tar.gz) = 411772
MD5 (embassy/PHYLIP-3.57c.tar.gz) = 83201895898feb15dbbae6affabd3609
SIZE (embassy/PHYLIP-3.57c.tar.gz) = 858348
MD5 (embassy/TOPO-1.0.0.tar.gz) = 0a8fcc84fdba071b20f3046de9fdb487
SIZE (embassy/TOPO-1.0.0.tar.gz) = 345938

Line 0 Link Here

(-)embassy/files/domainatrix-patch-Makefile.in (+11 lines)
	1	--- EMBASSY/DOMAINATRIX-1.0.0/src/Makefile.in.orig Sat May 28 12:21:57 2005
	2	+++ EMBASSY/DOMAINATRIX-1.0.0/src/Makefile.in Sat May 28 12:22:14 2005
	3	@@ -315,7 +315,7 @@
	4	@LOCALLINK_TRUE@ ../../../plplot/libplplot.la \
	5	@LOCALLINK_TRUE@ $(am__DEPENDENCIES_1)
	6	DEFAULT_INCLUDES = -I. -I$(srcdir)
	7	-depcomp = $(SHELL) $(top_srcdir)/../../depcomp
	8	+depcomp = $(SHELL) $(top_srcdir)/depcomp
	9	am__depfiles_maybe = depfiles
	10	COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
	11	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)

Line 0 Link Here

(-)embassy/files/emnu-patch-Makefile.in (+11 lines)
	1	--- EMBASSY/EMNU-1.05/source/Makefile.in.orig Sat May 28 12:57:17 2005
	2	+++ EMBASSY/EMNU-1.05/source/Makefile.in Sat May 28 13:03:33 2005
	3	@@ -63,7 +63,7 @@
	4	@LOCALLINK_TRUE@ ../../../plplot/libplplot.la \
	5	@LOCALLINK_TRUE@ $(am__DEPENDENCIES_1)
	6	DEFAULT_INCLUDES = -I. -I$(srcdir)
	7	-depcomp = $(SHELL) $(top_srcdir)/../../depcomp
	8	+depcomp = $(SHELL) $(top_srcdir)/depcomp
	9	am__depfiles_maybe = depfiles
	10	COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
	11	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)

Return to bug 81579

Lines 1-16 Link Here

(-)embassy/distinfo (-16 / +16 lines)
1	MD5 (embassy/DOMAINATRIX-1.0.0.tar.gz) = 78e1145851073a277e568ee3a691d999	1	MD5 (embassy/DOMAINATRIX-1.0.0.tar.gz) = 9deff6f5bf526408f0f02c002488ad59
2	SIZE (embassy/DOMAINATRIX-1.0.0.tar.gz) = 551090	2	SIZE (embassy/DOMAINATRIX-1.0.0.tar.gz) = 471604
3	MD5 (embassy/EMNU-1.05.tar.gz) = b091db115506ef89157b1cfb92a964b3	3	MD5 (embassy/EMNU-1.05.tar.gz) = df29ae1e8201081f4413862d7f10edb5
4	SIZE (embassy/EMNU-1.05.tar.gz) = 341879	4	SIZE (embassy/EMNU-1.05.tar.gz) = 339355
5	MD5 (embassy/ESIM4-1.0.0.tar.gz) = 3fa1de555365d79bdc38490e09683632	5	MD5 (embassy/ESIM4-1.0.0.tar.gz) = 3b8137b3b8ff0e84bc6e1243c7343578
6	SIZE (embassy/ESIM4-1.0.0.tar.gz) = 377821	6	SIZE (embassy/ESIM4-1.0.0.tar.gz) = 378342
7	MD5 (embassy/HMMER-2.1.1.tar.gz) = e7762beca88f2748cb7449e7f89ca068	7	MD5 (embassy/HMMER-2.1.1.tar.gz) = 56816b26a43c8542f7d12f9069e77843
8	SIZE (embassy/HMMER-2.1.1.tar.gz) = 555504	8	SIZE (embassy/HMMER-2.1.1.tar.gz) = 562855
9	MD5 (embassy/MEME-2.3.1.tar.gz) = 014237836443382b767efb4b315c2b6d	9	MD5 (embassy/MEME-2.3.1.tar.gz) = a9fb38886665f3f654da1244c2e1476f
10	SIZE (embassy/MEME-2.3.1.tar.gz) = 417514	10	SIZE (embassy/MEME-2.3.1.tar.gz) = 421914
11	MD5 (embassy/MSE-1.0.0.tar.gz) = f55522c9f474319f56227e6a63c91dad	11	MD5 (embassy/MSE-1.0.0.tar.gz) = b666681aceb9f07f968585f2edc4a039
12	SIZE (embassy/MSE-1.0.0.tar.gz) = 407726	12	SIZE (embassy/MSE-1.0.0.tar.gz) = 411772
13	MD5 (embassy/PHYLIP-3.57c.tar.gz) = bd242c3382a82d1a842e0a82778a40c2	13	MD5 (embassy/PHYLIP-3.57c.tar.gz) = 83201895898feb15dbbae6affabd3609
14	SIZE (embassy/PHYLIP-3.57c.tar.gz) = 856814	14	SIZE (embassy/PHYLIP-3.57c.tar.gz) = 858348
15	MD5 (embassy/TOPO-1.0.0.tar.gz) = 18409cc3ce6a402690b14a73535ebe07	15	MD5 (embassy/TOPO-1.0.0.tar.gz) = 0a8fcc84fdba071b20f3046de9fdb487
16	SIZE (embassy/TOPO-1.0.0.tar.gz) = 345281	16	SIZE (embassy/TOPO-1.0.0.tar.gz) = 345938