Attachment #74088 for bug #107246

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# Date created:				25 February 2002
# Whom:					Tony Maher <tonym@biolateral.com.au>
#
# $FreeBSD: ports/biology/primer3/Makefile,v 1.8 2006/05/03 23:26:34 edwin Exp $
#

PORTNAME=	primer3
PORTVERSION=	1.0.1
CATEGORIES=	biology
MASTER_SITES=	${MASTER_SITE_SOURCEFORGE}
MASTER_SITE_SUBDIR=	${PORTNAME}
DISTNAME=	${PORTNAME}_${PORTVERSION}

MAINTAINER=	fernan@iib.unsam.edu.ar
COMMENT=	Primer3 helps to choose primers for PCR reactions

WRKSRC=		${WRKDIR}/${DISTNAME}/src
DOCUMENTS=	README.${PORTNAME}_${PORTVERSION}.txt example

post-patch:
	@${REINPLACE_CMD} \

do-install:
	@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3
	@${MKDIR} ${DATADIR}
	@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/Copyright.txt ${DATADIR}
.if !defined(NOPORTDOCS)
	@${MKDIR} ${DOCSDIR}
.for file in ${DOCUMENTS}

.endif

post-install:
	@${CAT} ${DATADIR}/Copyright.txt

.include <bsd.port.mk>

Lines 1-3 Link Here

(-)primer3/distinfo (-3 / +3 lines)
1	MD5 (primer3_1.0.0.tar.gz) = 58605ee607f6218a2a775345b10d15fa	1	MD5 (primer3_1.0.1.tar.gz) = 4fa33b8667cec1b88f1516d175eb1bed
2	SHA256 (primer3_1.0.0.tar.gz) = fcbcf2e540e0062f3fa0d723b443b04a1c31e3e03e3aa5d97e3b2f910499f34b	2	SHA256 (primer3_1.0.1.tar.gz) = 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e
3	SIZE (primer3_1.0.0.tar.gz) = 936696	3	SIZE (primer3_1.0.1.tar.gz) = 902576

Return to bug 107246

Lines 2-21 Link Here

(-)primer3/Makefile (-7 / +8 lines)
2	# Date created: 25 February 2002	2	# Date created: 25 February 2002
3	# Whom: Tony Maher <tonym@biolateral.com.au>	3	# Whom: Tony Maher <tonym@biolateral.com.au>
4	#	4	#
5	# $FreeBSD: ports/biology/primer3/Makefile,v 1.9 2006/12/26 12:46:33 linimon Exp $	5	# $FreeBSD: ports/biology/primer3/Makefile,v 1.8 2006/05/03 23:26:34 edwin Exp $
6	#	6	#
7		7
8	PORTNAME= primer3	8	PORTNAME= primer3
9	PORTVERSION= 1.0.0	9	PORTVERSION= 1.0.1
10	CATEGORIES= biology	10	CATEGORIES= biology
11	MASTER_SITES= http://frodo.wi.mit.edu/primer3/	11	MASTER_SITES= ${MASTER_SITE_SOURCEFORGE}
		12	MASTER_SITE_SUBDIR= ${PORTNAME}
12	DISTNAME= ${PORTNAME}_${PORTVERSION}	13	DISTNAME= ${PORTNAME}_${PORTVERSION}
13		14
14	MAINTAINER= ports@FreeBSD.org	15	MAINTAINER= fernan@iib.unsam.edu.ar
15	COMMENT= Primer3 helps to choose primers for PCR reactions	16	COMMENT= Primer3 helps to choose primers for PCR reactions
16		17
17	WRKSRC= ${WRKDIR}/${DISTNAME}/src	18	WRKSRC= ${WRKDIR}/${DISTNAME}/src
18	DOCUMENTS= README example	19	DOCUMENTS= README.${PORTNAME}_${PORTVERSION}.txt example
19		20
20	post-patch:	21	post-patch:
21	@${REINPLACE_CMD} \	22	@${REINPLACE_CMD} \
Lines 28-34 Link Here
28	do-install:	29	do-install:
29	@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3	30	@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3
30	@${MKDIR} ${DATADIR}	31	@${MKDIR} ${DATADIR}
31	@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/Copyright ${DATADIR}	32	@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/Copyright.txt ${DATADIR}
32	.if !defined(NOPORTDOCS)	33	.if !defined(NOPORTDOCS)
33	@${MKDIR} ${DOCSDIR}	34	@${MKDIR} ${DOCSDIR}
34	.for file in ${DOCUMENTS}	35	.for file in ${DOCUMENTS}
Lines 41-46 Link Here
41	.endif	42	.endif
42		43
43	post-install:	44	post-install:
44	@${CAT} ${DATADIR}/Copyright	45	@${CAT} ${DATADIR}/Copyright.txt
45		46
46	.include <bsd.port.mk>	47	.include <bsd.port.mk>

Lines 1-4 Link Here

(-)primer3/pkg-plist (-88 / +88 lines)
1	%%PORTDOCS%%%%DOCSDIR%%/README	1	bin/primer3
		2	%%PORTDOCS%%%%DOCSDIR%%/README.primer3_1.0.1.txt
2	%%PORTDOCS%%%%DOCSDIR%%/example	3	%%PORTDOCS%%%%DOCSDIR%%/example
3	%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_gen.pl	4	%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_gen.pl
4	%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_input	5	%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_input
Lines 9-18 Link Here
9	%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_test.pl	10	%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_test.pl
10	%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_input	11	%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_input
11	%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_output	12	%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_output
		13	%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_tm_test.pl
12	%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production.lib	14	%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production.lib
		15	%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Ns.lib
		16	%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Xs.lib
		17	%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_input
		18	%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_output
		19	%%PORTDOCS%%%%EXAMPLESDIR%%/p3test.pl
13	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_input	20	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_input
		21	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_output
14	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.for	22	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.for
15	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.rev	23	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.rev
		24	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.for
		25	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.rev
		26	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.for
		27	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.int
		28	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.rev
		29	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.for
		30	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.rev
16	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.for	31	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.for
17	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.rev	32	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.rev
18	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.for	33	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.for
Lines 25-48 Link Here
25	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.rev	40	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.rev
26	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.for	41	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.for
27	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.rev	42	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.rev
28	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.for
29	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.rev
30	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.for
31	%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.int