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(-)Makefile (-7 / +7 lines)
Lines 6-22 Link Here
6 
#
 6 
#
7 

          7
          

        

        

          8
          
PORTNAME=	primer3

          8
          
PORTNAME=	primer3

        

          
            

              9
              
PORTVERSION=	1.0.1


              9
              
PORTVERSION=	1.1.3

            

        

          10
          
CATEGORIES=	biology

          10
          
CATEGORIES=	biology

        

          
            

              11
              
MASTER_SITES=	${MASTER_SITE_SOURCEFORGE}


              11
              
MASTER_SITES=	SF

            

            

              12
              
MASTER_SITE_SUBDIR=	${PORTNAME}


              12
              
DISTNAME=	${PORTNAME}-${PORTVERSION}

            

            

              13
              
DISTNAME=	${PORTNAME}_${PORTVERSION}


              
              
            

        

          14
          

          13
          

        

        

          15
          
MAINTAINER=	fernan@iib.unsam.edu.ar

          14
          
MAINTAINER=	fernan@iib.unsam.edu.ar

        

        

          16
          
COMMENT=	Primer3 helps to choose primers for PCR reactions

          15
          
COMMENT=	Primer3 helps to choose primers for PCR reactions

        

        

          17
          

          16
          

        

            

              
              
              17
              
USE_GMAKE=	yes

            

        

          18
          
WRKSRC=		${WRKDIR}/${DISTNAME}/src

          18
          
WRKSRC=		${WRKDIR}/${DISTNAME}/src

        

          
            

              19
              
DOCUMENTS=	README.${PORTNAME}_${PORTVERSION}.txt example


              19
              
DOCUMENTS=	README.txt example

            

        

          20
          

          20
          

        

        

          21
          
post-patch:

          21
          
post-patch:

        

        

          22
          
	@${REINPLACE_CMD} \

          22
          
	@${REINPLACE_CMD} \

        

  

    
      
            Lines 29-35
          
      
      
        Link Here
      
    
  

        

          29
          
do-install:

          29
          
do-install:

        

        

          30
          
	@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3

          30
          
	@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3

        

        

          31
          
	@${MKDIR} ${DATADIR}

          31
          
	@${MKDIR} ${DATADIR}

        

          
            

              32
              
	@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/Copyright.txt ${DATADIR}


              32
              
	@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/COPYING.txt ${DATADIR}

            

        

          33
          
.if !defined(NOPORTDOCS)

          33
          
.if !defined(NOPORTDOCS)

        

        

          34
          
	@${MKDIR} ${DOCSDIR}

          34
          
	@${MKDIR} ${DOCSDIR}

        

        

          35
          
.for file in ${DOCUMENTS}

          35
          
.for file in ${DOCUMENTS}

        

  

    
      
            Lines 42-47
          
      
      
        Link Here
      
    
  

        

          42
          
.endif

          42
          
.endif

        

        

          43
          

          43
          

        

        

          44
          
post-install:

          44
          
post-install:

        

          
            

              45
              
	@${CAT} ${DATADIR}/Copyright.txt


              45
              
	@${CAT} ${DATADIR}/COPYING.txt

            

        

          46
          

          46
          

        

        

          47
          
.include <bsd.port.mk>

          47
          
.include <bsd.port.mk>

        



(-)distinfo
      (-3 / +3 lines)




  

    
      
            Lines 1-3
          
      
      
        Link Here
      
    
  

          
            

              1
              
MD5 (primer3_1.0.1.tar.gz) = 4fa33b8667cec1b88f1516d175eb1bed


              1
              
MD5 (primer3-1.1.3.tar.gz) = 3d027d5dcbdb88c0f9622938f9d38534

            

            

              2
              
SHA256 (primer3_1.0.1.tar.gz) = 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e


              2
              
SHA256 (primer3-1.1.3.tar.gz) = ad3071fd1a8da8caae6f30b799cae4b7e53f00476ca0441b37bddf8995d1fa38

            

            

              3
              
SIZE (primer3_1.0.1.tar.gz) = 902576


              3
              
SIZE (primer3-1.1.3.tar.gz) = 943678

            



(-)pkg-plist
      (-360 / +378 lines)




  

    
      
            Lines 1-361
          
      
      
        Link Here
      
    
  

        

          1
          
bin/primer3

          1
          
bin/primer3

        

          
            

              2
              
%%PORTDOCS%%%%DOCSDIR%%/README.primer3_1.0.1.txt


              2
              
share/doc/primer3/README.txt

            

            

              3
              
%%PORTDOCS%%%%DOCSDIR%%/example


              3
              
share/doc/primer3/example

            

            

              4
              
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_gen.pl


              4
              
share/examples/primer3/Makefile

            

            

              5
              
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_input


              5
              
share/examples/primer3/dpal_input

            

            

              6
              
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_input


              6
              
share/examples/primer3/dpal_long_input

            

            

              7
              
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_score_output


              7
              
share/examples/primer3/dpal_long_score_output

            

            

              8
              
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_output


              8
              
share/examples/primer3/dpal_output

            

            

              9
              
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_score_output


              9
              
share/examples/primer3/dpal_score_output

            

            

              10
              
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_test.pl


              10
              
share/examples/primer3/dpal_test.pl

            

            

              11
              
%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_input


              11
              
share/examples/primer3/long_seq_input

            

            

              12
              
%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_output


              12
              
share/examples/primer3/long_seq_output

            

            

              13
              
%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_tm_test.pl


              13
              
share/examples/primer3/long_seq_tm_test.pl

            

            

              14
              
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production.lib


              14
              
share/examples/primer3/not_for_production.lib

            

            

              15
              
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Ns.lib


              15
              
share/examples/primer3/not_for_production_Ns.lib

            

            

              16
              
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Xs.lib


              16
              
share/examples/primer3/not_for_production_Xs.lib

            

            

              17
              
%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_input


              17
              
share/examples/primer3/oligotm.txt

            

            

              18
              
%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_output


              18
              
share/examples/primer3/oligotm_test.pl

            

            

              19
              
%%PORTDOCS%%%%EXAMPLESDIR%%/p3test.pl


              19
              
share/examples/primer3/p3-tmpl-mispriming_input

            

            

              20
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_input


              20
              
share/examples/primer3/p3-tmpl-mispriming_output

            

            

              21
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_output


              21
              
share/examples/primer3/p3test.pl

            

            

              22
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.for


              22
              
share/examples/primer3/primer1_input

            

            

              23
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.rev


              23
              
share/examples/primer3/primer1_list_last/AGAG.for

            

            

              24
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.for


              24
              
share/examples/primer3/primer1_list_last/AGAG.rev

            

            

              25
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.rev


              25
              
share/examples/primer3/primer1_list_last/SP01-02.txt.for

            

            

              26
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.for


              26
              
share/examples/primer3/primer1_list_last/SP01-02.txt.rev

            

            

              27
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.int


              27
              
share/examples/primer3/primer1_list_last/SP01-03.txt.for

            

            

              28
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.rev


              28
              
share/examples/primer3/primer1_list_last/SP01-03.txt.rev

            

            

              29
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.for


              29
              
share/examples/primer3/primer1_list_last/SP01-06.txt.for

            

            

              30
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.rev


              30
              
share/examples/primer3/primer1_list_last/SP01-06.txt.rev

            

            

              31
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.for


              31
              
share/examples/primer3/primer1_list_last/SP01-19.txt.for

            

            

              32
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.rev


              32
              
share/examples/primer3/primer1_list_last/SP01-19.txt.rev

            

            

              33
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.for


              33
              
share/examples/primer3/primer1_list_last/SP01-21.txt.for

            

            

              34
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.rev


              34
              
share/examples/primer3/primer1_list_last/SP01-21.txt.rev

            

            

              35
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.for


              35
              
share/examples/primer3/primer1_list_last/SP04-07.txt.for

            

            

              36
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.rev


              36
              
share/examples/primer3/primer1_list_last/SP04-07.txt.rev

            

            

              37
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.for


              37
              
share/examples/primer3/primer1_list_last/included_test.for

            

            

              38
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.rev


              38
              
share/examples/primer3/primer1_list_last/included_test.rev

            

            

              39
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.for


              39
              
share/examples/primer3/primer1_list_last/included_test_w_middle.for

            

            

              40
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.rev


              40
              
share/examples/primer3/primer1_list_last/included_test_w_middle.int

            

            

              41
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.for


              41
              
share/examples/primer3/primer1_list_last/included_test_w_middle.rev

            

            

              42
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.rev


              42
              
share/examples/primer3/primer1_list_last/long_seq.for

            

            

              43
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.for


              43
              
share/examples/primer3/primer1_list_last/long_seq.rev

            

            

              44
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.rev


              44
              
share/examples/primer3/primer1_list_last/targets_test.for

            

            

              45
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_formatted_output


              45
              
share/examples/primer3/primer1_list_last/targets_test.rev

            

            

              46
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_input


              46
              
share/examples/primer3/primer1_output

            

            

              47
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_output


              47
              
share/examples/primer3/primer_boundary1_formatted_output

            

            

              48
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_formatted_output


              48
              
share/examples/primer3/primer_boundary1_input

            

            

              49
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_input


              49
              
share/examples/primer3/primer_boundary1_output

            

            

              50
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_output


              50
              
share/examples/primer3/primer_boundary_formatted_output

            

            

              51
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_input


              51
              
share/examples/primer3/primer_boundary_input

            

            

              52
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_output


              52
              
share/examples/primer3/primer_boundary_output

            

            

              53
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_input


              53
              
share/examples/primer3/primer_check_input

            

            

              54
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_output


              54
              
share/examples/primer3/primer_check_output

            

            

              55
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.in


              55
              
share/examples/primer3/primer_end_pathology_input

            

            

              56
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.in


              56
              
share/examples/primer3/primer_end_pathology_output

            

            

              57
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.in


              57
              
share/examples/primer3/primer_global_err/MAX_PRIMER_LENGTH.in

            

            

              58
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.in


              58
              
share/examples/primer3/primer_global_err/MAX_PRIMER_LENGTH.out

            

            

              59
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.in


              59
              
share/examples/primer3/primer_global_err/MAX_PRIMER_LENGTH.out2

            

            

              60
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.in


              60
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_1.in

            

            

              61
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.in


              61
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_1.out

            

            

              62
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.in


              62
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_1.out2

            

            

              63
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.in


              63
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_2.in

            

            

              64
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.in


              64
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_2.out

            

            

              65
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.in


              65
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_2.out2

            

            

              66
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.in


              66
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_3.in

            

            

              67
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.in


              67
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_3.out

            

            

              68
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.in


              68
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_3.out2

            

            

              69
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.in


              69
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_4.in

            

            

              70
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.in


              70
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_4.out

            

            

              71
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.in


              71
              
share/examples/primer3/primer_global_err/bad_divalent_dntp_conc_4.out2

            

            

              72
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.in


              72
              
share/examples/primer3/primer_global_err/bad_dna_conc.in

            

            

              73
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.in


              73
              
share/examples/primer3/primer_global_err/bad_dna_conc.out

            

            

              74
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.in


              74
              
share/examples/primer3/primer_global_err/bad_dna_conc.out2

            

            

              75
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.in


              75
              
share/examples/primer3/primer_global_err/bad_float_1.in

            

            

              76
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.in


              76
              
share/examples/primer3/primer_global_err/bad_float_1.out

            

            

              77
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.in


              77
              
share/examples/primer3/primer_global_err/bad_float_1.out2

            

            

              78
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.in


              78
              
share/examples/primer3/primer_global_err/bad_float_2.in

            

            

              79
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.in


              79
              
share/examples/primer3/primer_global_err/bad_float_2.out

            

            

              80
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.in


              80
              
share/examples/primer3/primer_global_err/bad_float_2.out2

            

            

              81
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.in


              81
              
share/examples/primer3/primer_global_err/bad_float_3.in

            

            

              82
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.in


              82
              
share/examples/primer3/primer_global_err/bad_float_3.out

            

            

              83
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.in


              83
              
share/examples/primer3/primer_global_err/bad_float_3.out2

            

            

              84
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.in


              84
              
share/examples/primer3/primer_global_err/bad_float_4.in

            

            

              85
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.in


              85
              
share/examples/primer3/primer_global_err/bad_float_4.out

            

            

              86
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.in


              86
              
share/examples/primer3/primer_global_err/bad_float_4.out2

            

            

              87
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.in


              87
              
share/examples/primer3/primer_global_err/bad_gc_1.in

            

            

              88
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.in


              88
              
share/examples/primer3/primer_global_err/bad_gc_1.out

            

            

              89
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.in


              89
              
share/examples/primer3/primer_global_err/bad_gc_1.out2

            

            

              90
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.in


              90
              
share/examples/primer3/primer_global_err/bad_gc_2.in

            

            

              91
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.in


              91
              
share/examples/primer3/primer_global_err/bad_gc_2.out

            

            

              92
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.in


              92
              
share/examples/primer3/primer_global_err/bad_gc_2.out2

            

            

              93
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.in


              93
              
share/examples/primer3/primer_global_err/bad_gc_3.in

            

            

              94
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.in


              94
              
share/examples/primer3/primer_global_err/bad_gc_3.out

            

            

              95
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.in


              95
              
share/examples/primer3/primer_global_err/bad_gc_3.out2

            

            

              96
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.in


              96
              
share/examples/primer3/primer_global_err/bad_gc_int_1.in

            

            

              97
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.in


              97
              
share/examples/primer3/primer_global_err/bad_gc_int_1.out

            

            

              98
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.in


              98
              
share/examples/primer3/primer_global_err/bad_gc_int_1.out2

            

            

              99
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.in


              99
              
share/examples/primer3/primer_global_err/bad_gc_int_2.in

            

            

              100
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.in


              100
              
share/examples/primer3/primer_global_err/bad_gc_int_2.out

            

            

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share/examples/primer3/primer_mispriming_input

            

            

              335
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_output


              335
              
share/examples/primer3/primer_mispriming_long_lib_input

            

            

              336
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_quality_boundary_input


              336
              
share/examples/primer3/primer_mispriming_long_lib_output

            

            

              337
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_quality_boundary_output


              337
              
share/examples/primer3/primer_mispriming_output

            

            

              338
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_rat_input


              338
              
share/examples/primer3/primer_must_use_formatted_output

            

            

              339
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_rat_output


              339
              
share/examples/primer3/primer_must_use_input

            

            

              340
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_boundary1_lib


              340
              
share/examples/primer3/primer_must_use_output

            

            

              341
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_boundary2_lib


              341
              
share/examples/primer3/primer_num_best_input

            

            

              342
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_long_lib


              342
              
share/examples/primer3/primer_num_best_output

            

            

              343
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_start_codon_input


              343
              
share/examples/primer3/primer_obj_fn_input

            

            

              344
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_start_codon_output


              344
              
share/examples/primer3/primer_obj_fn_output

            

            

              345
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_syntax_input


              345
              
share/examples/primer3/primer_output

            

            

              346
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_syntax_output


              346
              
share/examples/primer3/primer_position_penalty_formatted_output

            

            

              347
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_formatted_output


              347
              
share/examples/primer3/primer_position_penalty_input

            

            

              348
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_input


              348
              
share/examples/primer3/primer_position_penalty_output

            

            

              349
              
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_output


              349
              
share/examples/primer3/primer_quality_boundary_input

            

            

              350
              
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib2


              350
              
share/examples/primer3/primer_quality_boundary_output

            

            

              351
              
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib3


              351
              
share/examples/primer3/primer_rat_input

            

            

              352
              
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib4


              352
              
share/examples/primer3/primer_rat_output

            

            

              353
              
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib5


              353
              
share/examples/primer3/primer_repeat_boundary1_lib

            

            

              354
              
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib6


              354
              
share/examples/primer3/primer_repeat_boundary2_lib

            

            

              355
              
%%DATADIR%%/Copyright.txt


              355
              
share/examples/primer3/primer_repeat_long_lib

            

            

              356
              
%%PORTDOCS%%@dirrm %%DOCSDIR%%


              356
              
share/examples/primer3/primer_start_codon_input

            

            

              357
              
@dirrm %%EXAMPLESDIR%%/primer1_list_last


              357
              
share/examples/primer3/primer_start_codon_output

            

            

              358
              
@dirrm %%EXAMPLESDIR%%/primer_global_err


              358
              
share/examples/primer3/primer_syntax_input

            

            

              359
              
@dirrm %%EXAMPLESDIR%%/primer_list_last


              359
              
share/examples/primer3/primer_syntax_output

            

            

              360
              
@dirrm %%EXAMPLESDIR%%


              360
              
share/examples/primer3/primer_task_formatted_output

            

            

              361
              
@dirrm %%DATADIR%%


              361
              
share/examples/primer3/primer_task_input

            

            

              
              

              362
              
share/examples/primer3/primer_task_output

            

            


              363
              
share/examples/primer3/primer_tm_lc_masking_formatted_output

            

            


              364
              
share/examples/primer3/primer_tm_lc_masking_input

            

            


              365
              
share/examples/primer3/primer_tm_lc_masking_output

            

            


              366
              
share/examples/primer3/repeat_lib1

            

            


              367
              
share/examples/primer3/repeat_lib2

            

            


              368
              
share/examples/primer3/repeat_lib3

            

            


              369
              
share/examples/primer3/repeat_lib4

            

            


              370
              
share/examples/primer3/repeat_lib5

            

            


              371
              
share/examples/primer3/repeat_lib6

            

            


              372
              
share/examples/primer3/vgrep.pl

            

            


              373
              
share/primer3/COPYING.txt

            

            


              374
              
@dirrm share/primer3

            

            


              375
              
@dirrm share/examples/primer3/primer_list_last

            

            


              376
              
@dirrm share/examples/primer3/primer_global_err

            

            


              377
              
@dirrm share/examples/primer3/primer1_list_last

            

            


              378
              
@dirrm share/examples/primer3

            

            


              379
              
@dirrm share/doc/primer3

            






  

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