Attachment #86010 for bug #122374




#

PORTNAME=	primer3
PORTVERSION=	1.1.3
CATEGORIES=	biology
MASTER_SITES=	SF
DISTNAME=	${PORTNAME}-${PORTVERSION}
DISTNAME=	${PORTNAME}_${PORTVERSION}

MAINTAINER=	fernan@iib.unsam.edu.ar
COMMENT=	Primer3 helps to choose primers for PCR reactions

USE_GMAKE=	yes
WRKSRC=		${WRKDIR}/${DISTNAME}/src
DOCUMENTS=	README.txt example

post-patch:
	@${REINPLACE_CMD} \

do-install:
	@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3
	@${MKDIR} ${DATADIR}
	@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/COPYING.txt ${DATADIR}
.if !defined(NOPORTDOCS)
	@${MKDIR} ${DOCSDIR}
.for file in ${DOCUMENTS}

.endif

post-install:
	@${CAT} ${DATADIR}/COPYING.txt

.include <bsd.port.mk>

Lines 1-3 Link Here

(-)primer3/distinfo (-3 / +3 lines)
1	MD5 (primer3_1.0.1.tar.gz) = 4fa33b8667cec1b88f1516d175eb1bed	1	MD5 (primer3-1.1.3.tar.gz) = 3d027d5dcbdb88c0f9622938f9d38534
2	SHA256 (primer3_1.0.1.tar.gz) = 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e	2	SHA256 (primer3-1.1.3.tar.gz) = ad3071fd1a8da8caae6f30b799cae4b7e53f00476ca0441b37bddf8995d1fa38
3	SIZE (primer3_1.0.1.tar.gz) = 902576	3	SIZE (primer3-1.1.3.tar.gz) = 943678




bin/primer3
%%PORTDOCS%%%%DOCSDIR%%/README.txt
%%PORTDOCS%%%%DOCSDIR%%/example
%%PORTDOCS%%%%EXAMPLESDIR%%/Makefile
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_input
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_input
%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_score_output

%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production.lib
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Ns.lib
%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Xs.lib
%%PORTDOCS%%%%EXAMPLESDIR%%/oligotm.txt
%%PORTDOCS%%%%EXAMPLESDIR%%/oligotm_test.pl
%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_input
%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_output
%%PORTDOCS%%%%EXAMPLESDIR%%/p3test.pl
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.for

%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_output

%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_divalent_dntp_conc_4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.in
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.out
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.out2
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_human_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_human_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_input

%%PORTDOCS%%%%EXAMPLESDIR%%/primer_lib_amb_codes_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/AGAG.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/AGAG.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-02.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-02.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-03.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-03.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-19.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.rev

%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-19.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-19.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-21.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-21.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP04-07.txt.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP04-07.txt.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.int
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/targets_test.for
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/targets_test.rev
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_obj_fn_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_formatted_output

%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_num_best_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_num_best_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_obj_fn_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_obj_fn_output
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib1
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_input

%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_tm_lc_masking_formatted_output
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_tm_lc_masking_input
%%PORTDOCS%%%%EXAMPLESDIR%%/primer_tm_lc_masking_output
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib1
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib2
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib3
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib4
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib5
%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib6
%%PORTDOCS%%%%EXAMPLESDIR%%/vgrep.pl
%%DATADIR%%/COPYING.txt
@dirrm %%EXAMPLESDIR%%/primer1_list_last
@dirrm %%EXAMPLESDIR%%/primer_global_err
@dirrm %%EXAMPLESDIR%%/primer_list_last
@dirrm %%EXAMPLESDIR%%
@dirrm %%DATADIR%%
@dirrm %%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last
@dirrm %%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err
@dirrm %%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last
@dirrm %%PORTDOCS%%%%EXAMPLESDIR%%
@dirrm %%PORTDOCS%%%%DOCSDIR%%

Return to bug 122374

Lines 6-22 Link Here

(-)primer3/Makefile (-7 / +7 lines)
6	#	6	#
7		7
8	PORTNAME= primer3	8	PORTNAME= primer3
9	PORTVERSION= 1.0.1	9	PORTVERSION= 1.1.3
10	CATEGORIES= biology	10	CATEGORIES= biology
11	MASTER_SITES= ${MASTER_SITE_SOURCEFORGE}	11	MASTER_SITES= SF
12	MASTER_SITE_SUBDIR= ${PORTNAME}	12	DISTNAME= ${PORTNAME}-${PORTVERSION}
13	DISTNAME= ${PORTNAME}_${PORTVERSION}
14		13
15	MAINTAINER= fernan@iib.unsam.edu.ar	14	MAINTAINER= fernan@iib.unsam.edu.ar
16	COMMENT= Primer3 helps to choose primers for PCR reactions	15	COMMENT= Primer3 helps to choose primers for PCR reactions
17		16
		17	USE_GMAKE= yes
18	WRKSRC= ${WRKDIR}/${DISTNAME}/src	18	WRKSRC= ${WRKDIR}/${DISTNAME}/src
19	DOCUMENTS= README.${PORTNAME}_${PORTVERSION}.txt example	19	DOCUMENTS= README.txt example
20		20
21	post-patch:	21	post-patch:
22	@${REINPLACE_CMD} \	22	@${REINPLACE_CMD} \
Lines 29-35 Link Here
29	do-install:	29	do-install:
30	@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3	30	@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3
31	@${MKDIR} ${DATADIR}	31	@${MKDIR} ${DATADIR}
32	@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/Copyright.txt ${DATADIR}	32	@${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/COPYING.txt ${DATADIR}
33	.if !defined(NOPORTDOCS)	33	.if !defined(NOPORTDOCS)
34	@${MKDIR} ${DOCSDIR}	34	@${MKDIR} ${DOCSDIR}
35	.for file in ${DOCUMENTS}	35	.for file in ${DOCUMENTS}
Lines 42-47 Link Here
42	.endif	42	.endif
43		43
44	post-install:	44	post-install:
45	@${CAT} ${DATADIR}/Copyright.txt	45	@${CAT} ${DATADIR}/COPYING.txt
46		46
47	.include <bsd.port.mk>	47	.include <bsd.port.mk>