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1149 |
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1150 |
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1151 |
%%DOCSDIR%%/programs/html/preg.html |
1152 |
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1153 |
%%DOCSDIR%%/programs/html/prettyplot.2.prettyplot.gif |
1154 |
%%DOCSDIR%%/programs/html/prettyplot.html |
1155 |
%%DOCSDIR%%/programs/html/prettyseq.html |
1156 |
%%DOCSDIR%%/programs/html/primersearch.html |
1157 |
%%DOCSDIR%%/programs/html/printsextract.html |
1158 |
%%DOCSDIR%%/programs/html/profit.html |
1159 |
%%DOCSDIR%%/programs/html/prophecy.html |
1160 |
%%DOCSDIR%%/programs/html/prophet.html |
1161 |
%%DOCSDIR%%/programs/html/prosextract.html |
1162 |
%%DOCSDIR%%/programs/html/protein_2d_structure_group.html |
1163 |
%%DOCSDIR%%/programs/html/protein_3d_structure_group.html |
1164 |
%%DOCSDIR%%/programs/html/protein_composition_group.html |
1165 |
%%DOCSDIR%%/programs/html/protein_motifs_group.html |
1166 |
%%DOCSDIR%%/programs/html/protein_mutation_group.html |
1167 |
%%DOCSDIR%%/programs/html/protein_profiles_group.html |
1168 |
%%DOCSDIR%%/programs/html/protein_sequence_alignment_group.html |
1169 |
%%DOCSDIR%%/programs/html/pscan.html |
1170 |
%%DOCSDIR%%/programs/html/psiphi.html |
1171 |
%%DOCSDIR%%/programs/html/rebaseextract.html |
1172 |
%%DOCSDIR%%/programs/html/recoder.html |
1173 |
%%DOCSDIR%%/programs/html/redata.html |
1174 |
%%DOCSDIR%%/programs/html/remap.html |
1175 |
%%DOCSDIR%%/programs/html/restover.html |
1176 |
%%DOCSDIR%%/programs/html/restrict.html |
1177 |
%%DOCSDIR%%/programs/html/revseq.html |
1178 |
%%DOCSDIR%%/programs/html/seealso.html |
1179 |
%%DOCSDIR%%/programs/html/seqmatchall.html |
1180 |
%%DOCSDIR%%/programs/html/seqret.html |
1181 |
%%DOCSDIR%%/programs/html/seqretsplit.html |
1182 |
%%DOCSDIR%%/programs/html/showalign.html |
1183 |
%%DOCSDIR%%/programs/html/showdb.html |
1184 |
%%DOCSDIR%%/programs/html/showfeat.html |
1185 |
%%DOCSDIR%%/programs/html/showorf.html |
1186 |
%%DOCSDIR%%/programs/html/showseq.html |
1187 |
%%DOCSDIR%%/programs/html/shuffleseq.html |
1188 |
%%DOCSDIR%%/programs/html/sigcleave.html |
1189 |
%%DOCSDIR%%/programs/html/silent.html |
1190 |
%%DOCSDIR%%/programs/html/sirna.html |
1191 |
%%DOCSDIR%%/programs/html/sixpack.html |
1192 |
%%DOCSDIR%%/programs/html/sizeseq.html |
1193 |
%%DOCSDIR%%/programs/html/skipredundant.html |
1194 |
%%DOCSDIR%%/programs/html/skipseq.html |
1195 |
%%DOCSDIR%%/programs/html/splitter.html |
1196 |
%%DOCSDIR%%/programs/html/stretcher.html |
1197 |
%%DOCSDIR%%/programs/html/stssearch.html |
1198 |
%%DOCSDIR%%/programs/html/supermatcher.html |
1199 |
%%DOCSDIR%%/programs/html/syco.1.syco.gif |
1200 |
%%DOCSDIR%%/programs/html/syco.html |
1201 |
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1202 |
%%DOCSDIR%%/programs/html/tcode.html |
1203 |
%%DOCSDIR%%/programs/html/template.html |
1204 |
%%DOCSDIR%%/programs/html/test_group.html |
1205 |
%%DOCSDIR%%/programs/html/textsearch.html |
1206 |
%%DOCSDIR%%/programs/html/tfextract.html |
1207 |
%%DOCSDIR%%/programs/html/tfm.html |
1208 |
%%DOCSDIR%%/programs/html/tfscan.html |
1209 |
%%DOCSDIR%%/programs/html/tmap.1.tmap.gif |
1210 |
%%DOCSDIR%%/programs/html/tmap.html |
1211 |
%%DOCSDIR%%/programs/html/tranalign.html |
1212 |
%%DOCSDIR%%/programs/html/transeq.html |
1213 |
%%DOCSDIR%%/programs/html/trimest.html |
1214 |
%%DOCSDIR%%/programs/html/trimseq.html |
1215 |
%%DOCSDIR%%/programs/html/trimspace.html |
1216 |
%%DOCSDIR%%/programs/html/twofeat.html |
1217 |
%%DOCSDIR%%/programs/html/union.html |
1218 |
%%DOCSDIR%%/programs/html/utils_database_creation_group.html |
1219 |
%%DOCSDIR%%/programs/html/utils_database_indexing_group.html |
1220 |
%%DOCSDIR%%/programs/html/utils_misc_group.html |
1221 |
%%DOCSDIR%%/programs/html/vectorstrip.html |
1222 |
%%DOCSDIR%%/programs/html/water.html |
1223 |
%%DOCSDIR%%/programs/html/whichdb.html |
1224 |
%%DOCSDIR%%/programs/html/wobble.1.wobble.gif |
1225 |
%%DOCSDIR%%/programs/html/wobble.html |
1226 |
%%DOCSDIR%%/programs/html/wordcount.html |
1227 |
%%DOCSDIR%%/programs/html/wordfinder.html |
1228 |
%%DOCSDIR%%/programs/html/wordmatch.html |
1229 |
%%DOCSDIR%%/programs/html/wossname.html |
1230 |
%%DOCSDIR%%/programs/html/yank.html |
1231 |
%%DOCSDIR%%/programs/text/SITE-DIRECTED.txt |
1232 |
%%DOCSDIR%%/programs/text/aaindexextract.txt |
1233 |
%%DOCSDIR%%/programs/text/abiview.txt |
1234 |
%%DOCSDIR%%/programs/text/acdc.txt |
1235 |
%%DOCSDIR%%/programs/text/acdlog.txt |
1236 |
%%DOCSDIR%%/programs/text/acdpretty.txt |
1237 |
%%DOCSDIR%%/programs/text/acdtable.txt |
1238 |
%%DOCSDIR%%/programs/text/acdtrace.txt |
1239 |
%%DOCSDIR%%/programs/text/acdvalid.txt |
1240 |
%%DOCSDIR%%/programs/text/aligncopy.txt |
1241 |
%%DOCSDIR%%/programs/text/aligncopypair.txt |
1242 |
%%DOCSDIR%%/programs/text/antigenic.txt |
1243 |
%%DOCSDIR%%/programs/text/backtranambig.txt |
1244 |
%%DOCSDIR%%/programs/text/backtranseq.txt |
1245 |
%%DOCSDIR%%/programs/text/banana.txt |
1246 |
%%DOCSDIR%%/programs/text/biosed.txt |
1247 |
%%DOCSDIR%%/programs/text/btwisted.txt |
1248 |
%%DOCSDIR%%/programs/text/cai.txt |
1249 |
%%DOCSDIR%%/programs/text/chaos.txt |
1250 |
%%DOCSDIR%%/programs/text/charge.txt |
1251 |
%%DOCSDIR%%/programs/text/checktrans.txt |
1252 |
%%DOCSDIR%%/programs/text/chips.txt |
1253 |
%%DOCSDIR%%/programs/text/cirdna.txt |
1254 |
%%DOCSDIR%%/programs/text/codcmp.txt |
1255 |
%%DOCSDIR%%/programs/text/codcopy.txt |
1256 |
%%DOCSDIR%%/programs/text/coderet.txt |
1257 |
%%DOCSDIR%%/programs/text/complex.txt |
1258 |
%%DOCSDIR%%/programs/text/compseq.txt |
1259 |
%%DOCSDIR%%/programs/text/cons.txt |
1260 |
%%DOCSDIR%%/programs/text/consambig.txt |
1261 |
%%DOCSDIR%%/programs/text/cpgplot.txt |
1262 |
%%DOCSDIR%%/programs/text/cpgreport.txt |
1263 |
%%DOCSDIR%%/programs/text/cusp.txt |
1264 |
%%DOCSDIR%%/programs/text/cutgextract.txt |
1265 |
%%DOCSDIR%%/programs/text/cutseq.txt |
1266 |
%%DOCSDIR%%/programs/text/dan.txt |
1267 |
%%DOCSDIR%%/programs/text/dbiblast.txt |
1268 |
%%DOCSDIR%%/programs/text/dbifasta.txt |
1269 |
%%DOCSDIR%%/programs/text/dbiflat.txt |
1270 |
%%DOCSDIR%%/programs/text/dbigcg.txt |
1271 |
%%DOCSDIR%%/programs/text/dbxfasta.txt |
1272 |
%%DOCSDIR%%/programs/text/dbxflat.txt |
1273 |
%%DOCSDIR%%/programs/text/dbxgcg.txt |
1274 |
%%DOCSDIR%%/programs/text/degapseq.txt |
1275 |
%%DOCSDIR%%/programs/text/density.txt |
1276 |
%%DOCSDIR%%/programs/text/descseq.txt |
1277 |
%%DOCSDIR%%/programs/text/diffseq.txt |
1278 |
%%DOCSDIR%%/programs/text/digest.txt |
1279 |
%%DOCSDIR%%/programs/text/distmat.txt |
1280 |
%%DOCSDIR%%/programs/text/dotmatcher.txt |
1281 |
%%DOCSDIR%%/programs/text/dotpath.txt |
1282 |
%%DOCSDIR%%/programs/text/dottup.txt |
1283 |
%%DOCSDIR%%/programs/text/dreg.txt |
1284 |
%%DOCSDIR%%/programs/text/edialign.txt |
1285 |
%%DOCSDIR%%/programs/text/einverted.txt |
1286 |
%%DOCSDIR%%/programs/text/embossdata.txt |
1287 |
%%DOCSDIR%%/programs/text/embossversion.txt |
1288 |
%%DOCSDIR%%/programs/text/emma.txt |
1289 |
%%DOCSDIR%%/programs/text/emowse.txt |
1290 |
%%DOCSDIR%%/programs/text/entret.txt |
1291 |
%%DOCSDIR%%/programs/text/epestfind.txt |
1292 |
%%DOCSDIR%%/programs/text/eprimer3.txt |
1293 |
%%DOCSDIR%%/programs/text/equicktandem.txt |
1294 |
%%DOCSDIR%%/programs/text/est2genome.txt |
1295 |
%%DOCSDIR%%/programs/text/etandem.txt |
1296 |
%%DOCSDIR%%/programs/text/extractalign.txt |
1297 |
%%DOCSDIR%%/programs/text/extractfeat.txt |
1298 |
%%DOCSDIR%%/programs/text/extractseq.txt |
1299 |
%%DOCSDIR%%/programs/text/featcopy.txt |
1300 |
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1301 |
%%DOCSDIR%%/programs/text/findkm.txt |
1302 |
%%DOCSDIR%%/programs/text/freak.txt |
1303 |
%%DOCSDIR%%/programs/text/frestdist.txt |
1304 |
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1305 |
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1306 |
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1307 |
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1308 |
%%DOCSDIR%%/programs/text/geecee.txt |
1309 |
%%DOCSDIR%%/programs/text/getorf.txt |
1310 |
%%DOCSDIR%%/programs/text/helixturnhelix.txt |
1311 |
%%DOCSDIR%%/programs/text/hmoment.txt |
1312 |
%%DOCSDIR%%/programs/text/iep.txt |
1313 |
%%DOCSDIR%%/programs/text/infoalign.txt |
1314 |
%%DOCSDIR%%/programs/text/infobase.txt |
1315 |
%%DOCSDIR%%/programs/text/inforesidue.txt |
1316 |
%%DOCSDIR%%/programs/text/infoseq.txt |
1317 |
%%DOCSDIR%%/programs/text/isochore.txt |
1318 |
%%DOCSDIR%%/programs/text/jaspextract.txt |
1319 |
%%DOCSDIR%%/programs/text/jaspscan.txt |
1320 |
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1321 |
%%DOCSDIR%%/programs/text/lindna.txt |
1322 |
%%DOCSDIR%%/programs/text/listor.txt |
1323 |
%%DOCSDIR%%/programs/text/makenucseq.txt |
1324 |
%%DOCSDIR%%/programs/text/makeprotseq.txt |
1325 |
%%DOCSDIR%%/programs/text/marscan.txt |
1326 |
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1327 |
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1328 |
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1329 |
%%DOCSDIR%%/programs/text/maskseq.txt |
1330 |
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1331 |
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1332 |
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1333 |
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1334 |
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1335 |
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1336 |
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1337 |
%%DOCSDIR%%/programs/text/newcpgreport.txt |
1338 |
%%DOCSDIR%%/programs/text/newcpgseek.txt |
1339 |
%%DOCSDIR%%/programs/text/newseq.txt |
1340 |
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1341 |
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1342 |
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1343 |
%%DOCSDIR%%/programs/text/notab.txt |
1344 |
%%DOCSDIR%%/programs/text/notseq.txt |
1345 |
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1346 |
%%DOCSDIR%%/programs/text/octanol.txt |
1347 |
%%DOCSDIR%%/programs/text/oddcomp.txt |
1348 |
%%DOCSDIR%%/programs/text/palindrome.txt |
1349 |
%%DOCSDIR%%/programs/text/pasteseq.txt |
1350 |
%%DOCSDIR%%/programs/text/patmatdb.txt |
1351 |
%%DOCSDIR%%/programs/text/patmatmotifs.txt |
1352 |
%%DOCSDIR%%/programs/text/pepcoil.txt |
1353 |
%%DOCSDIR%%/programs/text/pepinfo.txt |
1354 |
%%DOCSDIR%%/programs/text/pepnet.txt |
1355 |
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1356 |
%%DOCSDIR%%/programs/text/pepwheel.txt |
1357 |
%%DOCSDIR%%/programs/text/pepwindow.txt |
1358 |
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1359 |
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1360 |
%%DOCSDIR%%/programs/text/plotorf.txt |
1361 |
%%DOCSDIR%%/programs/text/polydot.txt |
1362 |
%%DOCSDIR%%/programs/text/preg.txt |
1363 |
%%DOCSDIR%%/programs/text/prettyplot.txt |
1364 |
%%DOCSDIR%%/programs/text/prettyseq.txt |
1365 |
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1366 |
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1367 |
%%DOCSDIR%%/programs/text/profit.txt |
1368 |
%%DOCSDIR%%/programs/text/prophecy.txt |
1369 |
%%DOCSDIR%%/programs/text/prophet.txt |
1370 |
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1371 |
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1372 |
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1373 |
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1374 |
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1375 |
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1376 |
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1377 |
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1378 |
%%DOCSDIR%%/programs/text/restrict.txt |
1379 |
%%DOCSDIR%%/programs/text/revseq.txt |
1380 |
%%DOCSDIR%%/programs/text/seealso.txt |
1381 |
%%DOCSDIR%%/programs/text/seqmatchall.txt |
1382 |
%%DOCSDIR%%/programs/text/seqret.txt |
1383 |
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1384 |
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1385 |
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1386 |
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1387 |
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1388 |
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1389 |
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1390 |
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1391 |
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1392 |
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1393 |
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1394 |
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1395 |
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1396 |
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1397 |
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1398 |
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1399 |
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1400 |
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1401 |
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1402 |
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1403 |
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1404 |
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1405 |
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1406 |
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1407 |
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1408 |
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1409 |
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1410 |
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1411 |
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1412 |
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1413 |
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1414 |
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1415 |
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1416 |
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1417 |
%%DOCSDIR%%/programs/text/whichdb.txt |
1418 |
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1419 |
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1420 |
%%DOCSDIR%%/programs/text/wordfinder.txt |
1421 |
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1422 |
%%DOCSDIR%%/programs/text/wossname.txt |
1423 |
%%DOCSDIR%%/programs/text/yank.txt |
1424 |
%%DOCSDIR%%/tutorials/emboss-gcg.ppt |
1425 |
%%DOCSDIR%%/tutorials/emboss-interfaces.ppt |
1426 |
%%DOCSDIR%%/tutorials/emboss-talk.ppt |
1427 |
%%DOCSDIR%%/tutorials/emboss_tut.tar.gz |
1347 |
%%DATADIR%%/emboss.default.template |
1428 |
%%DATADIR%%/emboss.default.template |
1348 |
%%DATADIR%%/jemboss/LICENSE |
1429 |
%%DATADIR%%/jemboss/LICENSE |
1349 |
%%DATADIR%%/jemboss/README |
1430 |
%%DATADIR%%/jemboss/README |
Lines 1644-1649
Link Here
|
1644 |
%%DATADIR%%/test/data/nucseq.pat |
1725 |
%%DATADIR%%/test/data/nucseq.pat |
1645 |
%%DATADIR%%/test/data/nucsimple.pat |
1726 |
%%DATADIR%%/test/data/nucsimple.pat |
1646 |
%%DATADIR%%/test/data/opsd.msf |
1727 |
%%DATADIR%%/test/data/opsd.msf |
|
|
1728 |
%%DATADIR%%/test/data/paamir.gff |
1729 |
%%DATADIR%%/test/data/paamir.gff3 |
1647 |
%%DATADIR%%/test/data/paamir.pep |
1730 |
%%DATADIR%%/test/data/paamir.pep |
1648 |
%%DATADIR%%/test/data/pax6_cdna.fasta |
1731 |
%%DATADIR%%/test/data/pax6_cdna.fasta |
1649 |
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1732 |
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Lines 1783-1813
Link Here
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1783 |
%%DATADIR%%/test/testdb/division.lkp |
1866 |
%%DATADIR%%/test/testdb/division.lkp |
1784 |
%%DATADIR%%/test/testdb/entrynam.idx |
1867 |
%%DATADIR%%/test/testdb/entrynam.idx |
1785 |
%%DATADIR%%/test/testdb/testdb.fasta |
1868 |
%%DATADIR%%/test/testdb/testdb.fasta |
|
|
1869 |
@dirrm bin |
1786 |
@dirrm include/eplplot |
1870 |
@dirrm include/eplplot |
1787 |
@dirrm include |
1871 |
@dirrm include |
|
|
1872 |
@dirrm lib |
1788 |
@dirrm %%DATADIR%%/acd |
1873 |
@dirrm %%DATADIR%%/acd |
1789 |
@dirrmtry %%DATADIR%%/data/AAINDEX |
1874 |
@dirrm %%DATADIR%%/data/AAINDEX |
1790 |
@dirrmtry %%DATADIR%%/data/CODONS |
1875 |
@dirrm %%DATADIR%%/data/CODONS |
1791 |
@dirrmtry %%DATADIR%%/data/REBASE |
1876 |
@dirrm %%DATADIR%%/data/JASPAR_CNE |
1792 |
@dirrmtry %%DATADIR%%/data/PRINTS |
1877 |
@dirrm %%DATADIR%%/data/JASPAR_CORE |
1793 |
@dirrmtry %%DATADIR%%/data/PROSITE |
1878 |
@dirrm %%DATADIR%%/data/JASPAR_FAM |
1794 |
@dirrmtry %%DATADIR%%/data |
1879 |
@dirrm %%DATADIR%%/data/JASPAR_PHYLOFACTS |
1795 |
@dirrm %%DATADIR%%/test/data |
1880 |
@dirrm %%DATADIR%%/data/JASPAR_POLII |
1796 |
@dirrm %%DATADIR%%/test/embl |
1881 |
@dirrm %%DATADIR%%/data/JASPAR_SPLICE |
1797 |
@dirrm %%DATADIR%%/test/genbank |
1882 |
@dirrm %%DATADIR%%/data/PRINTS |
1798 |
@dirrm %%DATADIR%%/test/pir |
1883 |
@dirrm %%DATADIR%%/data/PROSITE |
1799 |
@dirrm %%DATADIR%%/test/swiss |
1884 |
@dirrm %%DATADIR%%/data/REBASE |
1800 |
@dirrm %%DATADIR%%/test/swnew |
1885 |
@dirrm %%DATADIR%%/data |
1801 |
@dirrm %%DATADIR%%/test/testdb |
1886 |
@dirrm %%DOCSDIR%%/manuals |
1802 |
@dirrm %%DATADIR%%/test |
1887 |
@dirrm %%DOCSDIR%%/programs/html |
1803 |
%%PORTDOCS%%@dirrm %%DOCSDIR%%/manuals |
1888 |
@dirrm %%DOCSDIR%%/programs/text |
1804 |
%%PORTDOCS%%@dirrm %%DOCSDIR%%/html/emboss/apps |
1889 |
@dirrm %%DOCSDIR%%/programs |
1805 |
%%PORTDOCS%%@dirrm %%DOCSDIR%%/html/emboss |
1890 |
@dirrm %%DOCSDIR%%/tutorials |
1806 |
%%PORTDOCS%%@dirrm %%DOCSDIR%%/html |
1891 |
@dirrm %%DOCSDIR%% |
1807 |
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/text |
|
|
1808 |
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs |
1809 |
%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorials |
1810 |
%%PORTDOCS%%@dirrm %%DOCSDIR%% |
1811 |
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree |
1892 |
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree |
1812 |
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form |
1893 |
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form |
1813 |
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser |
1894 |
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser |
Lines 1824-1831
Link Here
|
1824 |
@dirrm %%DATADIR%%/jemboss/images |
1905 |
@dirrm %%DATADIR%%/jemboss/images |
1825 |
@dirrm %%DATADIR%%/jemboss/lib/axis |
1906 |
@dirrm %%DATADIR%%/jemboss/lib/axis |
1826 |
@dirrm %%DATADIR%%/jemboss/lib |
1907 |
@dirrm %%DATADIR%%/jemboss/lib |
1827 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/editor |
|
|
1828 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/draw |
1908 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/draw |
|
|
1909 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/editor |
1829 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/graphics |
1910 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/graphics |
1830 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree |
1911 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree |
1831 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/form |
1912 |
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/form |
Lines 1843-1850
Link Here
|
1843 |
@dirrm %%DATADIR%%/jemboss/resources |
1924 |
@dirrm %%DATADIR%%/jemboss/resources |
1844 |
@dirrm %%DATADIR%%/jemboss/utils |
1925 |
@dirrm %%DATADIR%%/jemboss/utils |
1845 |
@dirrm %%DATADIR%%/jemboss |
1926 |
@dirrm %%DATADIR%%/jemboss |
1846 |
@dirrmtry %%DATADIR%% |
1927 |
@dirrm %%DATADIR%%/test/data |
1847 |
@dirrmtry bin |
1928 |
@dirrm %%DATADIR%%/test/embl |
1848 |
@dirrmtry include |
1929 |
@dirrm %%DATADIR%%/test/genbank |
1849 |
@dirrmtry lib |
1930 |
@dirrm %%DATADIR%%/test/pir |
|
|
1931 |
@dirrm %%DATADIR%%/test/swiss |
1932 |
@dirrm %%DATADIR%%/test/swnew |
1933 |
@dirrm %%DATADIR%%/test/testdb |
1934 |
@dirrm %%DATADIR%%/test |
1935 |
@dirrm %%DATADIR%% |
1850 |
@dirrmtry share |
1936 |
@dirrmtry share |