Attachment 106010 Details for Bug 146564 – file.shar

file.shar

file.shar (text/plain), 14.08 KB, created by Veniamin on 2010-05-14 06:40:02 UTC

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Description:

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MIME Type:

Creator: Veniamin

Created: 2010-05-14 06:40:02 UTC

Size: 14.08 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	massxpert
>#	massxpert/Makefile
>#	massxpert/distinfo
>#	massxpert/pkg-descr
>#	massxpert/pkg-plist
>#
>echo c - massxpert
>mkdir -p massxpert > /dev/null 2>&1
>echo x - massxpert/Makefile
>sed 's/^X//' >massxpert/Makefile << 'b0305d87b4e596775d349e7f05d6d26e'
>X# New ports collection makefile for:	massxpert
>X# Date created:		2010-05-14
>X# Whom:			Gvozdikov Veniamin <g.veniamin@googlemail.com>
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	massxpert
>XPORTVERSION=	2.3.6
>XCATEGORIES=	science
>XMASTER_SITES=	http://download.tuxfamily.org/massxpert/source/
>X
>XMAINTAINER=	g.veniamin@googlemail.com
>XCOMMENT=	The massXpert software for (bio)chemists
>X
>XUSE_QT_VER=	4
>XUSE_CMAKE=	yes
>XUSE_LDCONFIG=	yes
>XQT_COMPONENTS=	gui xml rcc_build qmake_build uic_build moc_build \
>X		svg
>X
>X.include <bsd.port.mk>
>b0305d87b4e596775d349e7f05d6d26e
>echo x - massxpert/distinfo
>sed 's/^X//' >massxpert/distinfo << '01cfc05433dc51921ae0b9a2d6db856e'
>XMD5 (massxpert-2.3.6.tar.gz) = e51cf36f01e78cf07a71e33a8e0f8ad7
>XSHA256 (massxpert-2.3.6.tar.gz) = 9c28de0eb45c027551b52b865bae4a9cdcc874869cefadb3fe61a71e391f49e4
>XSIZE (massxpert-2.3.6.tar.gz) = 14197098
>01cfc05433dc51921ae0b9a2d6db856e
>echo x - massxpert/pkg-descr
>sed 's/^X//' >massxpert/pkg-descr << 'bf4dbddf8f612d8785a779c78cfaca6b'
>XThe massXpert project aims at providing (bio)chemists with a software
>Xpackage allowing the following:
>X
>X* User-specific atom definitions and polymer chemistry definitions;
>X* Powerful sequence editing with user-defined glyphs for each monomer
>Xand monomer chemical modification. Multi-region selections;
>X* Polymer sequence chemical/enzymatic cleavage;
>X* Intramolecular cross-linking, like disulfide bonds with total resolution
>Xof the peptides generated upon enzymatic cleavage;
>X* Gas-phase fragmentation of oligomers;
>X* Mass-to-charge ratio calculations with inline change of ionization agent;
>X* Calculation of net electrical charge and of isoelectric point (even by
>Xtaking into account monomer modifications if polymer is a protein);
>X* Simulation of isotopic patterns for any chemical formula and z charge;
>X* A number of plugins allow 1) translation of the sequence from one format
>Xto another (using a dictionary, like between the 1-letter code and the 3-letter
>Xcode of proteins) 2) conversion of number format according to any localized
>Xnumber format 3) sort mass lists.
>X
>XWWW:	http://massxpert.org/
>bf4dbddf8f612d8785a779c78cfaca6b
>echo x - massxpert/pkg-plist
>sed 's/^X//' >massxpert/pkg-plist << '364f45983f078f53b54b3e7f7ccadced'
>Xbin/massxpert
>Xlib/massxpert/plugins/libmassListSorterPlugin.so
>Xlib/massxpert/plugins/libseqToolsPlugin.so
>Xlib/massxpert/plugins/libnumeralsLocaleConverterPlugin.so
>X%%DOCSDIR%%/COPYING
>Xshare/applications/massxpert.desktop
>Xshare/man/man1/massxpert.1
>Xshare/man/man7/massxpert-data.7
>X%%DATADIR%%/locales/massxpert_fr.qm
>X%%DATADIR%%/pol-chem-defs/dna/adenine.svg
>X%%DATADIR%%/pol-chem-defs/dna/biotlink.svg
>X%%DATADIR%%/pol-chem-defs/dna/chem_pad.conf
>X%%DATADIR%%/pol-chem-defs/dna/cross_linker_dictionary
>X%%DATADIR%%/pol-chem-defs/dna/cursor.svg
>X%%DATADIR%%/pol-chem-defs/dna/cytosine.svg
>X%%DATADIR%%/pol-chem-defs/dna/default-cross-link-vignette.svg
>X%%DATADIR%%/pol-chem-defs/dna/default-modif-vignette.svg
>X%%DATADIR%%/pol-chem-defs/dna/diphospho.svg
>X%%DATADIR%%/pol-chem-defs/dna/dna.xml
>X%%DATADIR%%/pol-chem-defs/dna/guanine.svg
>X%%DATADIR%%/pol-chem-defs/dna/methyl.svg
>X%%DATADIR%%/pol-chem-defs/dna/modification_dictionary
>X%%DATADIR%%/pol-chem-defs/dna/monomer_dictionary
>X%%DATADIR%%/pol-chem-defs/dna/oxidation.svg
>X%%DATADIR%%/pol-chem-defs/dna/phospho.svg
>X%%DATADIR%%/pol-chem-defs/dna/ps-adenine.svg
>X%%DATADIR%%/pol-chem-defs/dna/ps-cytosine.svg
>X%%DATADIR%%/pol-chem-defs/dna/ps-guanine.svg
>X%%DATADIR%%/pol-chem-defs/dna/ps-thymine.svg
>X%%DATADIR%%/pol-chem-defs/dna/thymine-dimer.svg
>X%%DATADIR%%/pol-chem-defs/dna/thymine.svg
>X%%DATADIR%%/pol-chem-defs/dna/uracile.svg
>X%%DATADIR%%/pol-chem-defs/massxpert-pol-chem-defs-cat
>X%%DATADIR%%/pol-chem-defs/nucac/biotlink.svg
>X%%DATADIR%%/pol-chem-defs/nucac/chem_pad.conf
>X%%DATADIR%%/pol-chem-defs/nucac/cross_linker_dictionary
>X%%DATADIR%%/pol-chem-defs/nucac/cursor.svg
>X%%DATADIR%%/pol-chem-defs/nucac/dadenine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/dcytosine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/default-cross-link-vignette.svg
>X%%DATADIR%%/pol-chem-defs/nucac/default-modif-vignette.svg
>X%%DATADIR%%/pol-chem-defs/nucac/dguanine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/diphospho.svg
>X%%DATADIR%%/pol-chem-defs/nucac/dthymine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/methyl.svg
>X%%DATADIR%%/pol-chem-defs/nucac/modification_dictionary
>X%%DATADIR%%/pol-chem-defs/nucac/monomer_dictionary
>X%%DATADIR%%/pol-chem-defs/nucac/nucac.xml
>X%%DATADIR%%/pol-chem-defs/nucac/oxidation.svg
>X%%DATADIR%%/pol-chem-defs/nucac/phospho.svg
>X%%DATADIR%%/pol-chem-defs/nucac/ps-dadenine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/ps-dguanine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/ps-dcytosine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/ps-dthymine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/ps-radenine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/ps-rcytosine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/ps-rguanine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/ps-ruracile.svg
>X%%DATADIR%%/pol-chem-defs/nucac/radenine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/rcytosine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/rguanine.svg
>X%%DATADIR%%/pol-chem-defs/nucac/ruracile.svg
>X%%DATADIR%%/pol-chem-defs/nucac/thymine-dimer.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/acetyl.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/alanine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/arginine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/asparagine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/aspartate.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/cfp-chromophore.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/chem_pad.conf
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/cross_linker_dictionary
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/cursor.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/cysteine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/default-cross-link-vignette.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/default-modif-vignette.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/disulfidebond-cross-link.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/glutamate.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/glutamine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/glycine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/histidine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/isoleucine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/leucine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/lysine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/methionine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/modification_dictionary
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/monomer_dictionary
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/oxidation.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/pdb-code-conversion.dic
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/phenylalanine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/phospho.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/pka_ph_pi.xml
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/proline.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/protein-1-letter.xml
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/protonloss.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/serine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/sulfbond.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/sulpho.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/threonine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/tryptophan.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/tyrosine.svg
>X%%DATADIR%%/pol-chem-defs/protein-1-letter/valine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/acetyl.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/alanine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/arginine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/asparagine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/aspartate.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/chem_pad.conf
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/cross_linker_dictionary
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/cursor.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/cysteine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/default-cross-link-vignette.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/default-modif-vignette.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/glutamate.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/glutamine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/glycine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/histidine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/isoleucine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/leucine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/lysine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/methionine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/phospho.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/modification_dictionary
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/monomer_dictionary
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/oxidation.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/pdb-code-conversion.dic
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/phenylalanine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/proline.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/protein-3-letters.xml
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/protonloss.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/serine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/sulfbond.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/sulpho.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/threonine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/tryptophan.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/tyrosine.svg
>X%%DATADIR%%/pol-chem-defs/protein-3-letters/valine.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/allose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/allose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/altrose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/altrose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/arabinose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/arabinose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/chem_pad.conf
>X%%DATADIR%%/pol-chem-defs/saccharide/cross_linker_dictionary
>X%%DATADIR%%/pol-chem-defs/saccharide/cursor.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/default-cross-link-vignette.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/default-modif-vignette.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/erythrose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/erythrose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/erythrulose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/erythrulose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/fructose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/fructose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/galactose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/galactose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/glucose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/glucose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/gulose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/gulose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/idose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/idose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/lyxose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/lyxose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/mannose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/mannose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/methyl.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/modification_dictionary
>X%%DATADIR%%/pol-chem-defs/saccharide/monomer_dictionary
>X%%DATADIR%%/pol-chem-defs/saccharide/psicose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/psicose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/ribose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/ribose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/ribulose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/ribulose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/saccharide.xml
>X%%DATADIR%%/pol-chem-defs/saccharide/sorbose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/sorbose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/tagatose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/tagatose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/talose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/talose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/template-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/threose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/threose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/xylose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/xylose.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/xylulose-text.svg
>X%%DATADIR%%/pol-chem-defs/saccharide/xylulose.svg
>X%%DATADIR%%/pol-seqs/17-mer-ps-po-dna-chimera.mxp
>X%%DATADIR%%/pol-seqs/centrin-2-human.mxp
>X%%DATADIR%%/pol-seqs/cerulean-histag.mxp
>X%%DATADIR%%/pol-seqs/chicken-telokin.mxp
>X%%DATADIR%%/pol-seqs/citrin-fluorescent-protein.mxp
>X%%DATADIR%%/pol-seqs/cyan-fluorescent-protein-h148d-histag.mxp
>X%%DATADIR%%/pol-seqs/cyan-fluorescent-protein.mxp
>X%%DATADIR%%/pol-seqs/horse-myoglobin.mxp
>X%%DATADIR%%/pol-seqs/kunitz-inhibitor-human.mxp
>X%%DATADIR%%/pol-seqs/leu-enkephalin.mxp
>X%%DATADIR%%/pol-seqs/protein-1-letter.mxp
>X%%DATADIR%%/pol-seqs/protein-3-letters.mxp
>X%%DATADIR%%/pol-seqs/tev-protease-his-tag.mxp
>X%%DATADIR%%/pol-seqs/yellow-fluorescent-protein.mxp
>X%%DATADIR%%/dictionaries/codon-to-protein-1.dic
>X%%DATADIR%%/dictionaries/codon-to-protein-3.dic
>X%%DATADIR%%/dictionaries/pdb-protein-to-mxp.dic
>X%%DATADIR%%/dictionaries/protein-1-to-3.dic
>X%%DATADIR%%/dictionaries/protein-3-to-1.dic
>X%%DATADIR%%/chem_pad.conf
>X@dirrmtry %%DATADIR%%/pol-seqs
>X@dirrmtry %%DATADIR%%/pol-chem-defs/saccharide
>X@dirrmtry %%DATADIR%%/pol-chem-defs/protein-3-letters
>X@dirrmtry %%DATADIR%%/pol-chem-defs/protein-1-letter
>X@dirrmtry %%DATADIR%%/pol-chem-defs/nucac
>X@dirrmtry %%DATADIR%%/pol-chem-defs/dna
>X@dirrmtry %%DATADIR%%/pol-chem-defs
>X@dirrmtry %%DATADIR%%/locales
>X@dirrmtry %%DATADIR%%/dictionaries
>X@dirrmtry share/applications
>X@dirrmtry %%DATADIR%%
>X@dirrmtry share/man/man7
>X@dirrmtry share/man/man1
>X@dirrmtry share/man
>X@dirrm %%DOCSDIR%%
>X@dirrm lib/massxpert/plugins
>X@dirrm lib/massxpert
>364f45983f078f53b54b3e7f7ccadced
>exit

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Attachments on bug 146564: 106010