Attachment 123389 Details for Bug 166726 – file.shar

file.shar

file.shar (text/plain), 9.55 KB, created by Jason W. Bacon on 2012-04-07 15:20:01 UTC

(hide)

Description:

Filename:

MIME Type:

Creator: Jason W. Bacon

Created: 2012-04-07 15:20:01 UTC

Size: 9.55 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	fvcom
>#	fvcom/pkg-descr
>#	fvcom/Makefile
>#	fvcom/distinfo
>#	fvcom/files
>#	fvcom/files/patch-Makefile
>#	fvcom/files/patch-mod_lag.F
>#	fvcom/files/patch-METIS_source-makefile
>#
>echo c - fvcom
>mkdir -p fvcom > /dev/null 2>&1
>echo x - fvcom/pkg-descr
>sed 's/^X//' >fvcom/pkg-descr << '501d1001d556af2daebd2f403497aef9'
>XFVCOM is a prognostic, unstructured-grid, finite-volume, free-surface, 3-D
>Xprimitive equation coastal ocean circulation model developed by UMASSD-WHOI
>Xjoint efforts.
>X
>XWWW:	http://fvcom.smast.umassd.edu/FVCOM/index.html
>501d1001d556af2daebd2f403497aef9
>echo x - fvcom/Makefile
>sed 's/^X//' >fvcom/Makefile << '3d1abee2278bf98e801d51be8ba19aaf'
>X# New ports collection makefile for:	fvcom
>X# Date created:		2012-03-13
>X# Whom:			Jason Bacon <bacon@sculpin.jbacon.dyndns.org>
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	fvcom
>XPORTVERSION=	2.7.1
>XCATEGORIES=	science
>XMASTER_SITES=	http://fvcom.smast.umassd.edu/FVCOM/index.html/
>XDISTNAME=	sourcecode1
>X
>XMAINTAINER=	jwbacon@tds.net
>XCOMMENT=	Unstructured Grid Finite Volume Coastal Ocean Model
>X
>X# Check netcdf lib for Fortran support!
>XLIB_DEPENDS=	netcdff:${PORTSDIR}/science/netcdf-ftn \
>X		lapack:${PORTSDIR}/math/lapack \
>X		blas:${PORTSDIR}/math/lapack
>X
>XUSE_FORTRAN=	yes
>XWRKSRC=		${WRKDIR}/FVCOM2.7.1/FVCOM_source
>X
>X.include <bsd.port.pre.mk>
>X
>XPLIST_FILES=	bin/${PORTNAME}${PKGNAMESUFFIX}
>X
>X.if !defined(PACKAGE_BUILDING) && \
>X    !exists(${DISTDIR}/${DISTNAME}${EXTRACT_SUFX})
>Xpre-everything::
>X	@${PRINTF} "\nPlease register at http://fvcom.smast.umassd.edu/FVCOM/index.html in order to download the source code ${DISTNAME}${EXTRACT_SUFX} and place it in ${DISTDIR}.\n\n" | ${FMT}
>X	@${FALSE}
>X.endif
>X
>Xpost-extract:
>X	${MV} ${WRKSRC}/makefile ${WRKSRC}/Makefile
>X
>Xpre-build:
>X	(cd ${WRKSRC}/../METIS_source && make)
>X
>Xdo-install:
>X	${INSTALL_PROGRAM} ${WRKSRC}/fvcom \
>X		${PREFIX}/bin/${PORTNAME}${PKGNAMESUFFIX}
>X
>X.include <bsd.port.post.mk>
>3d1abee2278bf98e801d51be8ba19aaf
>echo x - fvcom/distinfo
>sed 's/^X//' >fvcom/distinfo << '1750b572474787a27a71c1f5812ed6cb'
>XSHA256 (sourcecode1.tar.gz) = b687fccef91e37b3b98554bd80bfbf6f857703cd9bdfde166b502bee7473b7ad
>XSIZE (sourcecode1.tar.gz) = 6162463
>1750b572474787a27a71c1f5812ed6cb
>echo c - fvcom/files
>mkdir -p fvcom/files > /dev/null 2>&1
>echo x - fvcom/files/patch-Makefile
>sed 's/^X//' >fvcom/files/patch-Makefile << '7a11eb13c22c448423d3cc8714c8143e'
>X--- Makefile.orig	2009-09-22 14:45:57.000000000 -0500
>X+++ Makefile	2012-03-31 21:58:24.000000000 -0500
>X@@ -17,7 +17,7 @@
>X #                           UNCOMMENT TO SELECT DOUBLE PRECISION
>X #--------------------------------------------------------------------------
>X 
>X-#            FLAG_1 =  -DDOUBLE_PRECISION 
>X+             FLAG_1 =  -DDOUBLE_PRECISION 
>X 
>X #--------------------------------------------------------------------------
>X #        SPHERICAL          SELECT SPHERICAL COORDINATES FOR INTEGRATION
>X@@ -35,7 +35,7 @@
>X #                           UNCOMMENT TO INCLUDE FLOODYING/DRYING
>X #--------------------------------------------------------------------------
>X 
>X-#             FLAG_3 = -DWET_DRY
>X+             FLAG_3 = -DWET_DRY
>X 
>X #--------------------------------------------------------------------------
>X #        MULTI_PROCESSOR    INCLUDES PARALLELIZATION WITH MPI
>X@@ -45,13 +45,14 @@
>X #                           UNCOMMENT TO INCLUDE MPI PARALLEL CAPABILITY
>X #--------------------------------------------------------------------------
>X 
>X-              FLAG_4 = -DMULTIPROCESSOR
>X+#              FLAG_4 = -DMULTIPROCESSOR
>X 
>X # For em64t computers at SMAST (guppy)
>X #              PARLIB = -L/hosts/salmon01/data00/medm/em64t/lib64 -lmetis 
>X 
>X # For i386 computers at SMAST (salmon and minke)
>X #              PARLIB = -L/hosts/salmon01/data00/medm/lib -lmetis 
>X+#              PARLIB = -L${LOCALBASE}/lib -lmetis 
>X               PARLIB = -L../METIS_source -lmetis 
>X 
>X # For Typhoeus and Hydra
>X@@ -67,7 +68,7 @@
>X #                           UNCOMMENT TO INCLUDE WATER QUALITY MODEL
>X #--------------------------------------------------------------------------
>X 
>X-#             FLAG_5 = -DWATER_QUALITY
>X+             FLAG_5 = -DWATER_QUALITY
>X 
>X #--------------------------------------------------------------------------
>X #        NETCDF OUTPUT      DUMP OUTPUT INTO NETCDF FILES (yes/no)
>X@@ -79,8 +80,10 @@
>X #                           UNCOMMENT TO INCLUDE NETCDF OUTPUT CAPABILITY
>X #--------------------------------------------------------------------------
>X            FLAG_6       =  -DNETCDF_IO
>X-             IOLIBS       =  -L/hosts/mao/usr/medm/install/netcdf/3.6.3/em64t/lib  -lnetcdf
>X-             IOINCS       =  -I/hosts/mao/usr/medm/install/netcdf/3.6.3/em64t/include
>X+# FreeBSD ports netcdf fortran support is separate from the standard
>X+# netcdf library. Must have both -lnetcdff and -lnetcdf
>X+             IOLIBS       =  -L${LOCALBASE}/lib -lnetcdff -lnetcdf
>X+             IOINCS       =  -I${LOCALBASE}/include
>X 
>X # For em64t computers at SMAST (guppy)
>X #             IOLIBS       =  -L/hosts/salmon01/data00/medm/em64t/lib64  -lnetcdf
>X@@ -107,7 +110,7 @@
>X #                           UNCOMMENT TO INCLUDE DATA ASSIMILATION 
>X #--------------------------------------------------------------------------
>X 
>X-#             FLAG_7 = -DNG_OI_ASSIM
>X+             FLAG_7 = -DNG_OI_ASSIM
>X 
>X # For Build on em64t computer (Guppy) 
>X #             OILIB  = -L/usr/X11R6/lib64 -L/usr/local/lib64 -lmkl_lapack -lmkl_em64t -lguide -lpthread
>X@@ -381,15 +384,15 @@
>X #--------------------------------------------------------------------------
>X #  Intel/MPI Compiler Definitions (SMAST)      
>X #--------------------------------------------------------------------------
>X-          CPP      = /usr/bin/cpp
>X-          CPPFLAGS = $(DEF_FLAGS) -DINTEL   
>X-          FC       = mpif90 
>X-         DEBFLGS  = #-check all
>X+#          CPP      = /usr/bin/cpp
>X+#          CPPFLAGS = $(DEF_FLAGS) -DINTEL   
>X+#          FC       = mpif90 
>X+#         DEBFLGS  = #-check all
>X # Use 'OPT = -O0 -g'  for fast compile to test the make 
>X # Use 'OPT = -xP'      for fast run on em64t (Hydra, Typhoeus and Guppy)
>X # Use 'OPT = -xN'      for fast run on em64t (Salmon and Minke)
>X #         OPT      = -O0 -g 
>X-          OPT      = -xP
>X+#          OPT      = -xP
>X #          OPT      = -xN
>X 
>X # Do not set static for use with visit!
>X@@ -398,12 +401,11 @@
>X #--------------------------------------------------------------------------
>X #  gfortran defs 
>X #--------------------------------------------------------------------------
>X-#         CPP      = /usr/bin/cpp 
>X-#         CPPFLAGS = $(DEF_FLAGS)  -DGFORTRAN
>X-#         FC       = gfortran  -O3 
>X-#         DEBFLGS  = 
>X-#         OPT      = 
>X-#         CLIB     = 
>X+         CPP      = cpp 
>X+         CPPFLAGS = $(DEF_FLAGS)  -DGFORTRAN
>X+         DEBFLGS  = -g
>X+         OPT      = -O
>X+         CLIB     = 
>X #--------------------------------------------------------------------------
>X #  absoft / mac os x defs
>X #--------------------------------------------------------------------------
>X@@ -448,7 +450,8 @@
>X #--------------------------------------------------------------------------
>X #  CAT Preprocessing Flags
>X #--------------------------------------------------------------------------
>X-           CPPARGS =  $(CPPFLAGS) $(DEF_FLAGS) $(FLAG_1) $(FLAG_2) \
>X+           CPPARGS =  $(CPPFLAGS) $(DEF_FLAGS) $(PORT_CPP_FLAGS) \
>X+   $(FLAG_1) $(FLAG_2) \
>X    $(FLAG_3) $(FLAG_4) $(FLAG_5) $(FLAG_6)  \
>X    $(FLAG_7) $(FLAG_8) $(FLAG_9) $(FLAG_10) \
>X    $(FLAG_11) $(FLAG_12) $(FLAG_13) $(FLAG_14) \
>X@@ -463,7 +466,7 @@
>X 
>X             LIBS  =	$(PV3LIB) $(CLIB)  $(PARLIB) $(IOLIBS)	\
>X 			$(MPILIB) $(GOTMLIB) $(KFLIB) $(BIOLIB)	\
>X-			$(OILIB) $(VISITLIB) $(PETSC_LIB)
>X+			$(OILIB) $(VISITLIB) $(PETSC_LIB) -llapack -lblas
>X 
>X             INCS  = 	$(IOINCS) $(GOTMINCS) $(BIOINCS) $(VISITINC) $(PETSC_FC_INCLUDES)
>X 
>X@@ -539,6 +542,8 @@
>X #  Linking Directives
>X #--------------------------------------------------------------------------
>X 
>X+all:		$(EXEC)
>X+
>X $(EXEC):	$(OBJS)
>X 		$(FC) $(FFLAGS) $(VISOPT) $(LDFLAGS) $(OBJS) $(LIBS) -o $(EXEC)
>X 
>7a11eb13c22c448423d3cc8714c8143e
>echo x - fvcom/files/patch-mod_lag.F
>sed 's/^X//' >fvcom/files/patch-mod_lag.F << 'd8371a56de761b2d4eda9bf0140f9f2d'
>X--- mod_lag.F.orig	2008-07-25 16:44:11.000000000 -0500
>X+++ mod_lag.F	2012-03-31 21:57:17.000000000 -0500
>X@@ -212,7 +212,12 @@
>X   !Lagrangian particle associated scalar
>X   character(len=80) :: lag_scal_choice
>X   integer, parameter:: n_scal_choice = 6
>X-  character(len=80) :: scal_choices(n_scal_choice) = (/"s1","t1","rho1","km","kh","user_defined"/)
>X+  character(len=80) :: scal_choices(n_scal_choice) = (/ "s1          ", &
>X+							"t1          ", &
>X+							"rho1        ", &
>X+							"km          ", &
>X+							"kh          ", &
>X+							"user_defined"/)
>X   logical           :: scal_choice_valid
>X 
>X 
>d8371a56de761b2d4eda9bf0140f9f2d
>echo x - fvcom/files/patch-METIS_source-makefile
>sed 's/^X//' >fvcom/files/patch-METIS_source-makefile << 'f5c8dc15368582156cc71b54398a43e3'
>X--- ../METIS_source/makefile.orig	2012-03-31 22:00:57.000000000 -0500
>X+++ ../METIS_source/makefile	2012-03-31 22:01:01.000000000 -0500
>X@@ -2,7 +2,7 @@
>X AR = ar rv
>X RANLIB = ranlib
>X # add path to c compiler 
>X-CC = icc 
>X+CC = gcc 
>X # add c compiler optimization flags
>X OPTFLAGS = -O2
>X CFLAGS = $(COPTIONS) $(OPTFLAGS) $(INCLUDES)
>f5c8dc15368582156cc71b54398a43e3
>exit

Actions: View

Attachments on bug 166726: 123389