Attachment 128029 Details for Bug 171918 – file.shar

file.shar

file.shar (text/plain), 3.15 KB, created by Jason W. Bacon on 2012-09-24 14:30:09 UTC

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Creator: Jason W. Bacon

Created: 2012-09-24 14:30:09 UTC

Size: 3.15 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	plink
>#	plink/pkg-descr
>#	plink/Makefile
>#	plink/distinfo
>#	plink/files
>#	plink/files/patch-Makefile
>#
>echo c - plink
>mkdir -p plink > /dev/null 2>&1
>echo x - plink/pkg-descr
>sed 's/^X//' >plink/pkg-descr << '13db0b698fc1987e35a2140396ca451a'
>XPLINK is a free, open-source whole genome association analysis toolset,
>Xdesigned to perform a range of basic, large-scale analyses in a
>Xcomputationally efficient manner.
>X
>XWWW:	http://pngu.mgh.harvard.edu/~purcell/plink/
>13db0b698fc1987e35a2140396ca451a
>echo x - plink/Makefile
>sed 's/^X//' >plink/Makefile << '3225f885242ffc903c9410142479cfcd'
>X# New ports collection makefile for:	plink
>X# Date created:		06 September 2012
>X# Whom:			Jason Bacon <jwbacon@tds.net>
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	plink
>XPORTVERSION=	1.07
>XCATEGORIES=	biology science
>XMASTER_SITES=	http://pngu.mgh.harvard.edu/~purcell/plink/dist/
>XDISTNAME=	${PORTNAME}-${PORTVERSION}-src
>X
>XMAINTAINER=	jwbacon@tds.net
>XCOMMENT=	Whole genome association analysis toolset
>X
>XLICENSE=	GPLv2
>X
>XLIB_DEPENDS=	lapack:${PORTSDIR}/math/lapack
>X
>XUSE_ZIP=	yes
>XUSE_GMAKE=	yes
>XUSE_FORTRAN=	yes	# Make it use the same compiler as lapack
>X
>XPLIST_FILES=	bin/plink
>X
>Xdo-install:
>X	${MKDIR} ${PREFIX}/bin
>X	${INSTALL_PROGRAM} ${WRKSRC}/plink ${PREFIX}/bin
>X
>X.include <bsd.port.mk>
>3225f885242ffc903c9410142479cfcd
>echo x - plink/distinfo
>sed 's/^X//' >plink/distinfo << 'a7e532cb61dd2baca4095cee307ed431'
>XSHA256 (plink-1.07-src.zip) = 4af56348443d0c6a1db64950a071b1fcb49cc74154875a7b43cccb4b6a7f482b
>XSIZE (plink-1.07-src.zip) = 2257297
>a7e532cb61dd2baca4095cee307ed431
>echo c - plink/files
>mkdir -p plink/files > /dev/null 2>&1
>echo x - plink/files/patch-Makefile
>sed 's/^X//' >plink/files/patch-Makefile << 'b45708355594ed1e96bc7248f5f1076c'
>X--- Makefile.orig	2009-10-10 11:00:20.000000000 -0500
>X+++ Makefile	2012-09-07 08:24:26.000000000 -0500
>X@@ -26,7 +26,7 @@
>X WITH_WEBCHECK = 1
>X FORCE_32BIT = 
>X WITH_ZLIB = 1
>X-WITH_LAPACK = 
>X+WITH_LAPACK = 1
>X FORCE_DYNAMIC = 
>X 
>X # Put C++ compiler here; Windows has it's own specific version
>X@@ -34,17 +34,17 @@
>X CXX_WIN = c:\bin\mingw\bin\mingw32-g++.exe
>X 
>X # Any other compiler flags here ( -Wall, -g, etc)
>X-CXXFLAGS = 
>X+# CXXFLAGS = 
>X 
>X # Misc
>X-LIB_LAPACK = /usr/lib/liblapack.so.3
>X+LIB_LAPACK = -L${LOCALBASE}/lib -llapack -lblas -lgfortran
>X 
>X 
>X # --------------------------------------------------------------------
>X # Do not edit below this line
>X # --------------------------------------------------------------------
>X 
>X-CXXFLAGS += -O3 -I.
>X+CXXFLAGS += -I.
>X OUTPUT = plink
>X 
>X # Some system specific flags
>X@@ -58,8 +58,8 @@
>X endif
>X 
>X ifeq ($(SYS),UNIX)
>X- CXXFLAGS += -DUNIX
>X- CXX = $(CXX_UNIX)
>X+ CXXFLAGS += -DUNIX -Dfopen64=fopen
>X+ CXX ?= $(CXX_UNIX)
>X  ifndef FORCE_DYNAMIC
>X   CXXFLAGS += -static
>X  endif
>X@@ -128,7 +128,7 @@
>X LIB += -ldl
>X endif
>X ifeq ($(SYS),UNIX)
>X-LIB += -ldl -lcrypt
>X+LIB += -lcrypt
>X endif
>X endif
>X 
>b45708355594ed1e96bc7248f5f1076c
>exit

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Attachments on bug 171918: 128029