FreeBSD Bugzilla – Attachment 135582 Details for
Bug 180518
biology/tinker: Update to version 6.2.06
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[patch]
file.diff
file.diff (text/plain), 3.83 KB, created by
tkato432
on 2013-07-12 19:10:06 UTC
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Description:
file.diff
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Creator:
tkato432
Created:
2013-07-12 19:10:06 UTC
Size:
3.83 KB
patch
obsolete
>diff -urN /usr/ports/biology/tinker/Makefile biology/tinker/Makefile >--- /usr/ports/biology/tinker/Makefile 2013-06-21 03:53:38.000000000 +0900 >+++ biology/tinker/Makefile 2013-07-13 00:00:00.000000000 +0900 >@@ -2,7 +2,7 @@ > # $FreeBSD: head/biology/tinker/Makefile 319343 2013-05-29 05:25:49Z miwi $ > > PORTNAME= tinker >-PORTVERSION= 6.2.05 >+PORTVERSION= 6.2.06 > CATEGORIES= biology > MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/ > >@@ -39,6 +39,9 @@ > post-extract: > @${CHMOD} -R u+w ${WRKSRC} > >+pre-build: >+ @${RM} -f ${BUILD_WRKSRC}/*.c >+ > post-install: > @${MKDIR} ${DATADIR} > (cd ${INSTALL_WRKSRC} && ${INSTALL_DATA} tinker.txt ${DATADIR}) >diff -urN /usr/ports/biology/tinker/distinfo biology/tinker/distinfo >--- /usr/ports/biology/tinker/distinfo 2013-06-21 03:53:38.000000000 +0900 >+++ biology/tinker/distinfo 2013-07-13 00:00:00.000000000 +0900 >@@ -1,2 +1,2 @@ >-SHA256 (tinker-6.2.05.tar.gz) = 73dcb0fff809bd38e8fbede896b778302ff1e89c90129ca30b54d773b2ea8e50 >-SIZE (tinker-6.2.05.tar.gz) = 20246464 >+SHA256 (tinker-6.2.06.tar.gz) = 6d5e79cd2a431787cd77bce2c469b7eec219f8e874425dcf8ebb74dabb0d985c >+SIZE (tinker-6.2.06.tar.gz) = 20182802 >diff -urN /usr/ports/biology/tinker/files/patch-make__Makefile biology/tinker/files/patch-make__Makefile >--- /usr/ports/biology/tinker/files/patch-make__Makefile 2013-06-21 03:53:38.000000000 +0900 >+++ biology/tinker/files/patch-make__Makefile 2013-07-13 00:00:00.000000000 +0900 >@@ -53,18 +53,18 @@ > > ## > ## Machine: Macintosh >-@@ -595,6 +609,8 @@ >+@@ -597,14 +611,13 @@ > xyzpdb.x \ > xyzsybyl.x > >+-%.o: %.f >+- ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ > +.SUFFIXES: .x >-+ >- .f.o: >- ${F77} ${F77FLAGS} ${OPTFLAGS} $*.f >- >-@@ -604,8 +620,8 @@ >- server.o: >- ${F77} ${F77FLAGS} ${OPTFLAGS} server.f >+ >+-%.o: %.c >+- ${CC} ${CFLAGS} ${INCLUDEDIR} ${OPTFLAGS} $< >++.f.o: >++ ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ > > -%.x: %.o libtinker.a > - ${F77} ${LINKFLAGS} -o $@ $^ ${LIBS}; strip $@ >@@ -73,14 +73,19 @@ > > all: ${EXEFILES} > >-@@ -616,66 +632,66 @@ >- cat *.i *.f *.c > tinker.txt >+@@ -612,70 +625,70 @@ >+ rm -f *.o *.a *.x >+ >+ listing: >+- cat *.i *.f *.c > tinker.txt >++ cat *.i *.f > tinker.txt > > rename: > - mv alchemy.x $(BINDIR)/alchemy > - mv analyze.x $(BINDIR)/analyze > - mv anneal.x $(BINDIR)/anneal > - mv archive.x $(BINDIR)/archive >+- mv bar.x $(BINDIR)/bar > - mv correlate.x $(BINDIR)/correlate > - mv crystal.x $(BINDIR)/crystal > - mv diffuse.x $(BINDIR)/diffuse >@@ -141,6 +146,7 @@ > + ${BSD_INSTALL_PROGRAM} analyze.x $(BINDIR)/analyze > + ${BSD_INSTALL_PROGRAM} anneal.x $(BINDIR)/anneal > + ${BSD_INSTALL_PROGRAM} archive.x $(BINDIR)/archive >++ ${BSD_INSTALL_PROGRAM} bar.x $(BINDIR)/bar > + ${BSD_INSTALL_PROGRAM} correlate.x $(BINDIR)/correlate > + ${BSD_INSTALL_PROGRAM} crystal.x $(BINDIR)/crystal > + ${BSD_INSTALL_PROGRAM} diffuse.x $(BINDIR)/diffuse >diff -urN /usr/ports/biology/tinker/pkg-plist biology/tinker/pkg-plist >--- /usr/ports/biology/tinker/pkg-plist 2013-06-21 03:53:38.000000000 +0900 >+++ biology/tinker/pkg-plist 2013-07-13 00:00:00.000000000 +0900 >@@ -2,6 +2,7 @@ > bin/analyze > bin/anneal > bin/archive >+bin/bar > bin/correlate > bin/crystal > bin/diffuse >@@ -156,6 +157,7 @@ > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/copper.xyz > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.key > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.xyz >+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.dyn > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.key > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.pdb > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.seq >@@ -279,7 +281,6 @@ > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.xyz > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.key > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.xyz >-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.dyn > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.key > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.xyz > %%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.int
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bug 180518
: 135582