Attachment 143158 Details for Bug 190314 – py-mlpy-3.5.0.patch

[patch] py-mlpy-3.5.0.patch

py-mlpy-3.5.0.patch (text/plain), 8.87 KB, created by Muhammad Moinur Rahman on 2014-05-27 16:40:00 UTC

(hide)

Description:

Filename:

MIME Type:

Creator: Muhammad Moinur Rahman

Created: 2014-05-27 16:40:00 UTC

Size: 8.87 KB

patch

obsolete

>diff -ruN /usr/ports//science/py-mlpy/Makefile ./Makefile
>--- /usr/ports//science/py-mlpy/Makefile	2014-03-11 02:55:20.000000000 +0600
>+++ ./Makefile	2014-05-27 21:07:19.626722742 +0600
>@@ -2,26 +2,26 @@
> # $FreeBSD: head/science/py-mlpy/Makefile 347809 2014-03-10 20:55:20Z gerald $
> 
> PORTNAME=	mlpy
>-PORTVERSION=	2.2.2
>-PORTREVISION=	4
>+PORTVERSION=	3.5.0
> CATEGORIES=	science python
>-MASTER_SITES=	https://mlpy.fbk.eu/download/src/
>+MASTER_SITES=	SF/${PORTNAME}/${PORTNAME}%20${PORTVERSION}
> PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
>-DISTNAME=	MLPY-${PORTVERSION}
> 
> MAINTAINER=	wen@FreeBSD.org
> COMMENT=	High performance Python package for predictive modeling
> 
>+LICENSE=	GPLv3
>+
> BUILD_DEPENDS=	${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \
> 		cython>0:${PORTSDIR}/lang/cython
> RUN_DEPENDS:=	${BUILD_DEPENDS}
>-LIB_DEPENDS=	gsl:${PORTSDIR}/math/gsl
>+LIB_DEPENDS=	libgsl.so:${PORTSDIR}/math/gsl
> 
>+USE_LDCONFIG=	yes
> CFLAGS+=	-I${LOCALBASE}/include -I${PYTHON_SITELIBDIR}/numpy/core
> LDFLAGS+=	-L${LOCALBASE}/lib
> USE_PYTHON=	yes
> USE_PYDISTUTILS=	yes
>-PYDISTUTILS_PKGNAME=	MLPY
>+PYDISTUTILS_AUTOPLIST=	yes
> 
>-NO_STAGE=	yes
> .include <bsd.port.mk>
>diff -ruN /usr/ports//science/py-mlpy/distinfo ./distinfo
>--- /usr/ports//science/py-mlpy/distinfo	2014-01-22 21:30:13.000000000 +0600
>+++ ./distinfo	2014-05-27 20:33:43.741863451 +0600
>@@ -1,2 +1,2 @@
>-SHA256 (MLPY-2.2.2.tar.gz) = 2c2864834ced9caddea83bc05ffc7526325cf5bffcfd6c3c4cf13097312b0057
>-SIZE (MLPY-2.2.2.tar.gz) = 235665
>+SHA256 (mlpy-3.5.0.tar.gz) = 344fa75fbf9f76af72f6a346d5309613defc4d244bac13c218e509a51d68bf6a
>+SIZE (mlpy-3.5.0.tar.gz) = 1961206
>diff -ruN /usr/ports//science/py-mlpy/files/patch-mlpy-cwt-cwb.c ./files/patch-mlpy-cwt-cwb.c
>--- /usr/ports//science/py-mlpy/files/patch-mlpy-cwt-cwb.c	2014-01-22 23:40:44.000000000 +0600
>+++ ./files/patch-mlpy-cwt-cwb.c	1970-01-01 06:00:00.000000000 +0600
>@@ -1,17 +0,0 @@
>---- mlpy/cwt/cwb.c.orig	2010-12-21 09:10:04.000000000 +0800
>-+++ mlpy/cwt/cwb.c	2010-12-21 09:12:05.000000000 +0800
>-@@ -142,9 +142,12 @@
>-   complex double p = 0.0 + 0.0I; 
>-   double sw, norm = 1.0;
>-   
>--  
>-+#ifndef __STD_IEC_559_COMPLEX__  /* FreeBSD lacks C99 cpow() */
>-+  p = - gsl_complex_pow(0.0 + 1.0I, order) / sqrt(gsl_sf_gamma(order + 0.5));
>-+#else
>-   p = - cpow(0.0 + 1.0I, order) / sqrt(gsl_sf_gamma(order + 0.5));
>--  
>-+#endif /* __STD_IEC_559_COMPLEX__ */
>-+
>-   for (i=0; i<n; i++)
>-     {
>-       if (nm == 1)
>diff -ruN /usr/ports//science/py-mlpy/files/patch-setup.py ./files/patch-setup.py
>--- /usr/ports//science/py-mlpy/files/patch-setup.py	2014-01-22 23:40:44.000000000 +0600
>+++ ./files/patch-setup.py	1970-01-01 06:00:00.000000000 +0600
>@@ -1,17 +0,0 @@
>---- setup.py.orig	2010-10-18 20:08:13.000000000 +0800
>-+++ setup.py	2010-12-23 15:19:09.000000000 +0800
>-@@ -158,11 +158,13 @@
>-                               "mlpy/liblinear/liblinear/blas/daxpy.c",
>-                               "mlpy/liblinear/liblinear/blas/ddot.c",
>-                               "mlpy/liblinear/liblinear/blas/dnrm2.c",
>--                              "mlpy/liblinear/liblinear/blas/dscal.c"], 
>-+                              "mlpy/liblinear/liblinear/blas/dscal.c"],
>-+                             include_dirs=base_include, 
>-                              extra_compile_args=extra_compile_args),
>-                    Extension("mlpy.libsvm",
>-                              ["mlpy/libsvm/libsvm/svm.cpp",
>-                               "mlpy/libsvm/libsvm.pyx"],
>-+                             include_dirs=base_include,
>-                              extra_compile_args=extra_compile_args)
>-                    ],
>-       scripts=["mlpy/tools/mlpy-test"],
>diff -ruN /usr/ports//science/py-mlpy/pkg-descr ./pkg-descr
>--- /usr/ports//science/py-mlpy/pkg-descr	2014-01-22 21:44:51.000000000 +0600
>+++ ./pkg-descr	2014-05-27 20:22:04.699909932 +0600
>@@ -8,4 +8,4 @@
> resampling, error evaluation and experiment landscaping.The package
> includes tools to measure stability in sets of ranked feature lists.
> 
>-WWW:	http://mlpy.fbk.eu/
>+WWW: http://mlpy.sourceforge.net/
>diff -ruN /usr/ports//science/py-mlpy/pkg-plist ./pkg-plist
>--- /usr/ports//science/py-mlpy/pkg-plist	2014-01-22 21:16:56.000000000 +0600
>+++ ./pkg-plist	1970-01-01 06:00:00.000000000 +0600
>@@ -1,123 +0,0 @@
>-bin/mlpy-test
>-%%PYTHON_SITELIBDIR%%/mlpy/__init__.py
>-%%PYTHON_SITELIBDIR%%/mlpy/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_borda.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_borda.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_borda.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_canberra.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_canberra.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_canberra.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_ci.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_ci.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_ci.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_cwt.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_cwt.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_cwt.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_data.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_data.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_data.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_dlda.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_dlda.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_dlda.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_dtw.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_dtw.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_dtw.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_dwt.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_dwt.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_dwt.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_dwtfs.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_dwtfs.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_dwtfs.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_elasticnet.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_elasticnet.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_elasticnet.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_extend.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_extend.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_extend.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_fda.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_fda.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_fda.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_fssun.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_fssun.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_fssun.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_hcluster.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_hcluster.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_hcluster.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_imputing.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_imputing.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_imputing.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_irelief.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_irelief.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_irelief.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_iuwt.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_iuwt.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_iuwt.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_kernel.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_kernel.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_kernel.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_kmeans.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_kmeans.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_kmeans.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_kmedoids.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_kmedoids.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_kmedoids.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_knn.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_knn.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_lars.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_lars.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_lars.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_knn.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_metrics.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_metrics.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_metrics.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_minkowski.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_minkowski.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_minkowski.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_pda.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_pda.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_pda.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_ranking.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_ranking.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_ranking.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_resampling.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_resampling.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_resampling.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_ridgeregression.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_ridgeregression.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_ridgeregression.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_spectralreg.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_spectralreg.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_spectralreg.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_srda.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_srda.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_srda.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_svm.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_svm.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_svm.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/_uwt.py
>-%%PYTHON_SITELIBDIR%%/mlpy/_uwt.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/_uwt.pyo
>-%%PYTHON_SITELIBDIR%%/mlpy/canberra.so
>-%%PYTHON_SITELIBDIR%%/mlpy/cwb.so
>-%%PYTHON_SITELIBDIR%%/mlpy/dtw.so
>-%%PYTHON_SITELIBDIR%%/mlpy/dwt.so
>-%%PYTHON_SITELIBDIR%%/mlpy/elasticnet.so
>-%%PYTHON_SITELIBDIR%%/mlpy/fssun.so
>-%%PYTHON_SITELIBDIR%%/mlpy/hc.so
>-%%PYTHON_SITELIBDIR%%/mlpy/irregularuwt.so
>-%%PYTHON_SITELIBDIR%%/mlpy/gslpy.so
>-%%PYTHON_SITELIBDIR%%/mlpy/kmeans.so
>-%%PYTHON_SITELIBDIR%%/mlpy/kernel.so
>-%%PYTHON_SITELIBDIR%%/mlpy/knn.so
>-%%PYTHON_SITELIBDIR%%/mlpy/liblinear.so
>-%%PYTHON_SITELIBDIR%%/mlpy/libsvm.so
>-%%PYTHON_SITELIBDIR%%/mlpy/misc.so
>-%%PYTHON_SITELIBDIR%%/mlpy/peaksd.so
>-%%PYTHON_SITELIBDIR%%/mlpy/spectralreg.so
>-%%PYTHON_SITELIBDIR%%/mlpy/svm.so
>-%%PYTHON_SITELIBDIR%%/mlpy/uwt.so
>-%%PYTHON_SITELIBDIR%%/mlpy/version.py
>-%%PYTHON_SITELIBDIR%%/mlpy/version.pyc
>-%%PYTHON_SITELIBDIR%%/mlpy/version.pyo
>-@dirrm %%PYTHON_SITELIBDIR%%/mlpy

Actions: View | Diff

Attachments on bug 190314: 143158