Attachment 143589 Details for Bug 190854 – shar file of new port framework

shar file of new port framework

ncbi-blast-shar.txt (text/plain), 207.89 KB, created by Jason W. Bacon on 2014-06-10 01:54:16 UTC

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Creator: Jason W. Bacon

Created: 2014-06-10 01:54:16 UTC

Size: 207.89 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	ncbi-blast
>#	ncbi-blast/files
>#	ncbi-blast/files/patch-src-build-system-configure
>#	ncbi-blast/distinfo
>#	ncbi-blast/Makefile
>#	ncbi-blast/pkg-descr
>#	ncbi-blast/pkg-plist
>#
>echo c - ncbi-blast
>mkdir -p ncbi-blast > /dev/null 2>&1
>echo c - ncbi-blast/files
>mkdir -p ncbi-blast/files > /dev/null 2>&1
>echo x - ncbi-blast/files/patch-src-build-system-configure
>sed 's/^X//' >ncbi-blast/files/patch-src-build-system-configure << '5d793d1e2fa7670c30fc7566e5101058'
>X--- src/build-system/configure.orig	2014-05-30 13:48:24.000000000 -0500
>X+++ src/build-system/configure	2014-05-30 13:49:53.000000000 -0500
>X@@ -849,8 +849,6 @@
>X   --libdir=DIR           object code libraries [EPREFIX/lib]
>X   --includedir=DIR       C header files [PREFIX/include]
>X   --oldincludedir=DIR    C header files for non-gcc [/usr/include]
>X-  --infodir=DIR          info documentation [PREFIX/info]
>X-  --mandir=DIR           man documentation [PREFIX/man]
>X _ACEOF
>X 
>X   cat <<\_ACEOF
>5d793d1e2fa7670c30fc7566e5101058
>echo x - ncbi-blast/distinfo
>sed 's/^X//' >ncbi-blast/distinfo << '98313477de6e1827265d4b7a1ae8f2d5'
>XSHA256 (ncbi-blast-2.2.29+-src.tar.gz) = 520a3d2212679452e273f04fb095550c64abbb7a94dcfc2c6752b8277b62f346
>XSIZE (ncbi-blast-2.2.29+-src.tar.gz) = 15574532
>98313477de6e1827265d4b7a1ae8f2d5
>echo x - ncbi-blast/Makefile
>sed 's/^X//' >ncbi-blast/Makefile << '04ba67d1b8363af9a4cc002e8f9dee55'
>X# Created by: Jason Bacon <jwbacon@tds.net>
>X# $FreeBSD$
>X
>XPORTNAME=	blast
>XPORTVERSION=	2.2.29
>XCATEGORIES=	biology
>XMASTER_SITES=	ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
>XPKGNAMEPREFIX=	ncbi
>XDISTNAME=	${PKGNAMEPREFIX}-${PORTNAME}-${PORTVERSION}+-src
>X
>XMAINTAINER=	jwbacon@tds.net
>XCOMMENT=	NCBI implementation of Basic Local Alignment Search Tool
>X
>XLICENSE=	Public_domain
>XLICENSE_NAME=	Public Domain
>XLICENSE_FILE=	${WRKSRC}/scripts/projects/blast/LICENSE
>XLICENSE_PERMS=	dist-mirror dist-sell pkg-mirror pkg-sell auto-accept
>X
>XLIB_DEPENDS=	libpcre.so:${PORTSDIR}/devel/pcre \
>X		libbz2.so:${PORTSDIR}/archivers/bzip2
>X
>XWRKSRC=		${WRKDIR}/${DISTNAME}/c++
>X
>XGNU_CONFIGURE=	yes
>XUSES=		gmake shebangfix perl5
>XSHEBANG_FILES=	src/app/blast/legacy_blast.pl \
>X		src/app/blast/update_blastdb.pl \
>X		src/app/winmasker/windowmasker_2.2.22_adapter.py
>X# Requires openmp
>XUSE_GCC=	yes
>XUSE_PYTHON=	yes
>XUSE_LDCONFIG=	yes
>X
>X# configure chooses /usr/local/bin/ar with no flags
>X# FreeBSD boost port flagged by configure as untested version
>XCONFIGURE_ARGS+=AR="ar cr" --without-boost
>X
>X# Fix "undefined _ThreadRuneLocale" error on 10.0
>X# Add staging support to configure-generated Makefile
>Xpost-patch:
>X	${REINPLACE_CMD} \
>X		-e "s|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|g" \
>X		${WRKSRC}/src/build-system/configure
>X	${REINPLACE_CMD} \
>X		-e 's|@prefix@|${STAGEDIR}@prefix@|g' \
>X		${WRKSRC}/src/build-system/Makefile.in.top
>X
>Xpost-install:
>X	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/*.so
>X
>X.include <bsd.port.mk>
>04ba67d1b8363af9a4cc002e8f9dee55
>echo x - ncbi-blast/pkg-descr
>sed 's/^X//' >ncbi-blast/pkg-descr << 'b1c6e313f315da0f10c11204e197b513'
>XThe Basic Local Alignment Search Tool (BLAST) finds regions of local
>Xsimilarity between sequences. The program compares nucleotide or protein
>Xsequences to sequence databases and calculates the statistical significance of
>Xmatches. BLAST can be used to infer functional and evolutionary relationships
>Xbetween sequences as well as help identify members of gene families.
>X
>XWWW: http://blast.ncbi.nlm.nih.gov
>b1c6e313f315da0f10c11204e197b513
>echo x - ncbi-blast/pkg-plist
>sed 's/^X//' >ncbi-blast/pkg-plist << '7ec228fb889d4ca1983a930120902723'
>Xbin/blast_formatter
>Xbin/blastdb_aliastool
>Xbin/blastdbcheck
>Xbin/blastdbcmd
>Xbin/blastdbcp
>Xbin/blastn
>Xbin/blastp
>Xbin/blastx
>Xbin/convert2blastmask
>Xbin/datatool
>Xbin/deltablast
>Xbin/dustmasker
>Xbin/gene_info_reader
>Xbin/legacy_blast.pl
>Xbin/makeblastdb
>Xbin/makembindex
>Xbin/makeprofiledb
>Xbin/project_tree_builder
>Xbin/psiblast
>Xbin/rpsblast
>Xbin/rpstblastn
>Xbin/seedtop
>Xbin/segmasker
>Xbin/seqdb_demo
>Xbin/seqdb_perf
>Xbin/tblastn
>Xbin/tblastx
>Xbin/update_blastdb.pl
>Xbin/windowmasker
>Xbin/windowmasker_2.2.22_adapter.py
>Xinclude/ncbi-tools++/algo/blast/api/bl2seq.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_advprot_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_aux.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_dbindex.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_exception.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_mtlock.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_options_builder.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_options_handle.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_prot_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_results.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_rps_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blast_types.hpp
>Xinclude/ncbi-tools++/algo/blast/api/blastx_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp
>Xinclude/ncbi-tools++/algo/blast/api/deltablast.hpp
>Xinclude/ncbi-tools++/algo/blast/api/deltablast_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/disc_nucl_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/effsearchspace_calc.hpp
>Xinclude/ncbi-tools++/algo/blast/api/hspstream_queue.hpp
>Xinclude/ncbi-tools++/algo/blast/api/local_blast.hpp
>Xinclude/ncbi-tools++/algo/blast/api/local_db_adapter.hpp
>Xinclude/ncbi-tools++/algo/blast/api/local_search.hpp
>Xinclude/ncbi-tools++/algo/blast/api/msa_pssm_input.hpp
>Xinclude/ncbi-tools++/algo/blast/api/objmgr_query_data.hpp
>Xinclude/ncbi-tools++/algo/blast/api/objmgrfree_query_data.hpp
>Xinclude/ncbi-tools++/algo/blast/api/phiblast_nucl_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/phiblast_prot_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/prelim_stage.hpp
>Xinclude/ncbi-tools++/algo/blast/api/psi_pssm_input.hpp
>Xinclude/ncbi-tools++/algo/blast/api/psibl2seq.hpp
>Xinclude/ncbi-tools++/algo/blast/api/psiblast.hpp
>Xinclude/ncbi-tools++/algo/blast/api/psiblast_iteration.hpp
>Xinclude/ncbi-tools++/algo/blast/api/psiblast_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/pssm_engine.hpp
>Xinclude/ncbi-tools++/algo/blast/api/pssm_input.hpp
>Xinclude/ncbi-tools++/algo/blast/api/query_data.hpp
>Xinclude/ncbi-tools++/algo/blast/api/remote_blast.hpp
>Xinclude/ncbi-tools++/algo/blast/api/remote_search.hpp
>Xinclude/ncbi-tools++/algo/blast/api/repeats_filter.hpp
>Xinclude/ncbi-tools++/algo/blast/api/rps_aux.hpp
>Xinclude/ncbi-tools++/algo/blast/api/rpsblast_local.hpp
>Xinclude/ncbi-tools++/algo/blast/api/rpstblastn_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/search_strategy.hpp
>Xinclude/ncbi-tools++/algo/blast/api/seedtop.hpp
>Xinclude/ncbi-tools++/algo/blast/api/seqinfosrc_seqdb.hpp
>Xinclude/ncbi-tools++/algo/blast/api/seqinfosrc_seqvec.hpp
>Xinclude/ncbi-tools++/algo/blast/api/seqsrc_multiseq.hpp
>Xinclude/ncbi-tools++/algo/blast/api/seqsrc_seqdb.hpp
>Xinclude/ncbi-tools++/algo/blast/api/setup_factory.hpp
>Xinclude/ncbi-tools++/algo/blast/api/sseqloc.hpp
>Xinclude/ncbi-tools++/algo/blast/api/subj_ranges_set.hpp
>Xinclude/ncbi-tools++/algo/blast/api/tblastn_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/tblastx_options.hpp
>Xinclude/ncbi-tools++/algo/blast/api/traceback_stage.hpp
>Xinclude/ncbi-tools++/algo/blast/api/uniform_search.hpp
>Xinclude/ncbi-tools++/algo/blast/api/version.hpp
>Xinclude/ncbi-tools++/algo/blast/api/windowmask_filter.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/blast_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/blast_fasta_input.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/blast_input.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/blast_input_aux.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/blast_scope_src.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/blastn_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/blastp_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/blastx_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/cmdline_flags.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/deltablast_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/igblastn_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/igblastp_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/psiblast_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/rmblastn_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/rpsblast_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/rpstblastn_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/tblastn_args.hpp
>Xinclude/ncbi-tools++/algo/blast/blastinput/tblastx_args.hpp
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/compo_heap.h
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/compo_mode_condition.h
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/composition_adjustment.h
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/composition_constants.h
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/matrix_frequency_data.h
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/nlm_linear_algebra.h
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/optimize_target_freq.h
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/redo_alignment.h
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/smith_waterman.h
>Xinclude/ncbi-tools++/algo/blast/composition_adjustment/unified_pvalues.h
>Xinclude/ncbi-tools++/algo/blast/core/aa_ungapped.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_aalookup.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_aascan.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_def.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_diagnostics.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_encoding.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_engine.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_export.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_extend.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_filter.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_gapalign.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_hits.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_hspfilter.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_hspstream.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_kappa.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_lookup.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_message.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_nalookup.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_nascan.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_options.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_parameters.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_program.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_psi.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_query_info.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_rps.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_seg.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_seqsrc.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_seqsrc_impl.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_setup.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_stat.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_sw.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_toolkit.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_traceback.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_tune.h
>Xinclude/ncbi-tools++/algo/blast/core/blast_util.h
>Xinclude/ncbi-tools++/algo/blast/core/gapinfo.h
>Xinclude/ncbi-tools++/algo/blast/core/gencode_singleton.h
>Xinclude/ncbi-tools++/algo/blast/core/greedy_align.h
>Xinclude/ncbi-tools++/algo/blast/core/hspfilter_besthit.h
>Xinclude/ncbi-tools++/algo/blast/core/hspfilter_collector.h
>Xinclude/ncbi-tools++/algo/blast/core/hspfilter_culling.h
>Xinclude/ncbi-tools++/algo/blast/core/link_hsps.h
>Xinclude/ncbi-tools++/algo/blast/core/lookup_util.h
>Xinclude/ncbi-tools++/algo/blast/core/lookup_wrap.h
>Xinclude/ncbi-tools++/algo/blast/core/mb_indexed_lookup.h
>Xinclude/ncbi-tools++/algo/blast/core/na_ungapped.h
>Xinclude/ncbi-tools++/algo/blast/core/ncbi_math.h
>Xinclude/ncbi-tools++/algo/blast/core/ncbi_std.h
>Xinclude/ncbi-tools++/algo/blast/core/pattern.h
>Xinclude/ncbi-tools++/algo/blast/core/phi_extend.h
>Xinclude/ncbi-tools++/algo/blast/core/phi_gapalign.h
>Xinclude/ncbi-tools++/algo/blast/core/phi_lookup.h
>Xinclude/ncbi-tools++/algo/blast/core/split_query.h
>Xinclude/ncbi-tools++/algo/blast/dbindex/dbindex.hpp
>Xinclude/ncbi-tools++/algo/blast/dbindex/dbindex_sp.hpp
>Xinclude/ncbi-tools++/algo/blast/dbindex/sequence_istream.hpp
>Xinclude/ncbi-tools++/algo/blast/dbindex/sequence_istream_bdb.hpp
>Xinclude/ncbi-tools++/algo/blast/dbindex/sequence_istream_fasta.hpp
>Xinclude/ncbi-tools++/algo/blast/format/blast_format.hpp
>Xinclude/ncbi-tools++/algo/blast/format/blastfmtutil.hpp
>Xinclude/ncbi-tools++/algo/blast/format/blastxml_format.hpp
>Xinclude/ncbi-tools++/algo/blast/format/build_archive.hpp
>Xinclude/ncbi-tools++/algo/blast/format/data4xmlformat.hpp
>Xinclude/ncbi-tools++/algo/blast/format/vecscreen_run.hpp
>Xinclude/ncbi-tools++/algo/blast/igblast/igblast.hpp
>Xinclude/ncbi-tools++/algo/dustmask/sdust.tex
>Xinclude/ncbi-tools++/algo/dustmask/symdust.hpp
>Xinclude/ncbi-tools++/algo/segmask/segmask.hpp
>Xinclude/ncbi-tools++/algo/winmask/README.API
>Xinclude/ncbi-tools++/algo/winmask/seq_masker.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_cache_boost.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_istat.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_istat_ascii.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_istat_bin.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_istat_factory.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_istat_oascii.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_istat_obinary.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_ostat.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_ostat_ascii.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_ostat_bin.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_ostat_factory.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_ostat_opt.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_ascii.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_bin.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_score.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_score_mean.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_score_mean_glob.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_score_min.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_uset_array.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_uset_hash.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_uset_simple.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_util.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_window.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_window_ambig.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_window_pattern.hpp
>Xinclude/ncbi-tools++/algo/winmask/seq_masker_window_pattern_ambig.hpp
>Xinclude/ncbi-tools++/algo/winmask/win_mask_config.hpp
>Xinclude/ncbi-tools++/algo/winmask/win_mask_counts_converter.hpp
>Xinclude/ncbi-tools++/algo/winmask/win_mask_dup_table.hpp
>Xinclude/ncbi-tools++/algo/winmask/win_mask_gen_counts.hpp
>Xinclude/ncbi-tools++/algo/winmask/win_mask_util.hpp
>Xinclude/ncbi-tools++/cgi/caf.hpp
>Xinclude/ncbi-tools++/cgi/caf_encoded.hpp
>Xinclude/ncbi-tools++/cgi/caf_plain.hpp
>Xinclude/ncbi-tools++/cgi/cgi_exception.hpp
>Xinclude/ncbi-tools++/cgi/cgi_serial.hpp
>Xinclude/ncbi-tools++/cgi/cgi_session.hpp
>Xinclude/ncbi-tools++/cgi/cgi_util.hpp
>Xinclude/ncbi-tools++/cgi/cgiapp.hpp
>Xinclude/ncbi-tools++/cgi/cgiapp_cached.hpp
>Xinclude/ncbi-tools++/cgi/cgictx.hpp
>Xinclude/ncbi-tools++/cgi/error_codes.hpp
>Xinclude/ncbi-tools++/cgi/impl/cgi_entry_reader.hpp
>Xinclude/ncbi-tools++/cgi/ncbicgi.hpp
>Xinclude/ncbi-tools++/cgi/ncbicgir.hpp
>Xinclude/ncbi-tools++/cgi/ncbires.hpp
>Xinclude/ncbi-tools++/cgi/ref_args.hpp
>Xinclude/ncbi-tools++/cgi/user_agent.hpp
>Xinclude/ncbi-tools++/common/config/ncbiconf_msvc.h
>Xinclude/ncbi-tools++/common/config/ncbiconf_msvc_site.h
>Xinclude/ncbi-tools++/common/config/ncbiconf_universal.h
>Xinclude/ncbi-tools++/common/config/ncbiconf_xcode.h
>Xinclude/ncbi-tools++/common/config/ncbiconf_xcode_site.h
>Xinclude/ncbi-tools++/common/header_template.hpp
>Xinclude/ncbi-tools++/common/metamodules_doxygen.h
>Xinclude/ncbi-tools++/common/ncbi_export.h
>Xinclude/ncbi-tools++/common/ncbi_package_ver.h
>Xinclude/ncbi-tools++/common/ncbi_pch_impl.hpp
>Xinclude/ncbi-tools++/common/ncbi_skew_guard.h
>Xinclude/ncbi-tools++/common/ncbi_source_ver.h
>Xinclude/ncbi-tools++/common/ncbiconf_impl.h
>Xinclude/ncbi-tools++/common/test_assert.h
>Xinclude/ncbi-tools++/common/test_assert_impl.h
>Xinclude/ncbi-tools++/common/test_data_path.h
>Xinclude/ncbi-tools++/connect/connect_export.h
>Xinclude/ncbi-tools++/connect/email_diag_handler.hpp
>Xinclude/ncbi-tools++/connect/error_codes.hpp
>Xinclude/ncbi-tools++/connect/ext/ncbi_crypt.h
>Xinclude/ncbi-tools++/connect/ext/ncbi_dblb.h
>Xinclude/ncbi-tools++/connect/ext/ncbi_dblb_svcmapper.hpp
>Xinclude/ncbi-tools++/connect/ext/ncbi_ifconf.h
>Xinclude/ncbi-tools++/connect/ext/ncbi_iprange.h
>Xinclude/ncbi-tools++/connect/ext/ncbi_localnet.h
>Xinclude/ncbi-tools++/connect/impl/server_connection.hpp
>Xinclude/ncbi-tools++/connect/impl/thread_pool_for_server.hpp
>Xinclude/ncbi-tools++/connect/ncbi_base64.h
>Xinclude/ncbi-tools++/connect/ncbi_buffer.h
>Xinclude/ncbi-tools++/connect/ncbi_conn_exception.hpp
>Xinclude/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp
>Xinclude/ncbi-tools++/connect/ncbi_conn_stream.hpp
>Xinclude/ncbi-tools++/connect/ncbi_conn_test.hpp
>Xinclude/ncbi-tools++/connect/ncbi_connection.h
>Xinclude/ncbi-tools++/connect/ncbi_connector.h
>Xinclude/ncbi-tools++/connect/ncbi_connutil.h
>Xinclude/ncbi-tools++/connect/ncbi_core.h
>Xinclude/ncbi-tools++/connect/ncbi_core_cxx.hpp
>Xinclude/ncbi-tools++/connect/ncbi_file_connector.h
>Xinclude/ncbi-tools++/connect/ncbi_ftp_connector.h
>Xinclude/ncbi-tools++/connect/ncbi_gnutls.h
>Xinclude/ncbi-tools++/connect/ncbi_heapmgr.h
>Xinclude/ncbi-tools++/connect/ncbi_host_info.h
>Xinclude/ncbi-tools++/connect/ncbi_http_connector.h
>Xinclude/ncbi-tools++/connect/ncbi_memory_connector.h
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>Xlib/libpcassay-static.a
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>Xlib/libremapcli-static.a
>Xlib/libremapcli.a
>Xlib/libscoremat-static.a
>Xlib/libscoremat.a
>Xlib/libseq-static.a
>Xlib/libseq.a
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>Xlib/libtest_mt-static.a
>Xlib/libtest_mt.a
>Xlib/libtinyseq-static.a
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>Xlib/libtrackmgr-static.a
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>Xlib/libxalgoblastdbindex-static.a
>Xlib/libxalgoblastdbindex.a
>Xlib/libxalgodustmask-static.a
>Xlib/libxalgodustmask.a
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>Xlib/libxalgosegmask.a
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>Xlib/libxconnect.a
>Xlib/libxconnext-static.a
>Xlib/libxconnext.a
>Xlib/libxconnserv-static.a
>Xlib/libxconnserv.a
>Xlib/libxcser-static.a
>Xlib/libxcser.a
>Xlib/libxfcgi-static.a
>Xlib/libxfcgi.a
>Xlib/libxformat-static.a
>Xlib/libxformat.a
>Xlib/libxhtml-static.a
>Xlib/libxhtml.a
>Xlib/libxncbi-static.a
>Xlib/libxncbi.a
>Xlib/libxnetblast-static.a
>Xlib/libxnetblast.a
>Xlib/libxnetblastcli-static.a
>Xlib/libxnetblastcli.a
>Xlib/libxobjmgr-static.a
>Xlib/libxobjmgr.a
>Xlib/libxobjread-static.a
>Xlib/libxobjread.a
>Xlib/libxobjreadex-static.a
>Xlib/libxobjreadex.a
>Xlib/libxobjsimple-static.a
>Xlib/libxobjsimple.a
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>Xlib/libxregexp.a
>Xlib/libxser-static.a
>Xlib/libxser.a
>Xlib/libxthrserv-static.a
>Xlib/libxthrserv.a
>Xlib/libxutil-static.a
>Xlib/libxutil.a
>Xlib/libxxconnect-static.a
>Xlib/libxxconnect.a
>X@dirrm include/ncbi-tools++/algo/blast/api
>X@dirrm include/ncbi-tools++/algo/blast/blastinput
>X@dirrm include/ncbi-tools++/algo/blast/composition_adjustment
>X@dirrm include/ncbi-tools++/algo/blast/core
>X@dirrm include/ncbi-tools++/algo/blast/dbindex
>X@dirrm include/ncbi-tools++/algo/blast/format
>X@dirrm include/ncbi-tools++/algo/blast/igblast
>X@dirrm include/ncbi-tools++/algo/blast
>X@dirrm include/ncbi-tools++/algo/dustmask
>X@dirrm include/ncbi-tools++/algo/segmask
>X@dirrm include/ncbi-tools++/algo/winmask
>X@dirrm include/ncbi-tools++/algo
>X@dirrm include/ncbi-tools++/cgi/impl
>X@dirrm include/ncbi-tools++/cgi
>X@dirrm include/ncbi-tools++/common/config
>X@dirrm include/ncbi-tools++/common
>X@dirrm include/ncbi-tools++/connect/ext
>X@dirrm include/ncbi-tools++/connect/impl
>X@dirrm include/ncbi-tools++/connect/services
>X@dirrm include/ncbi-tools++/connect
>X@dirrm include/ncbi-tools++/corelib/hash_impl
>X@dirrm include/ncbi-tools++/corelib/impl
>X@dirrm include/ncbi-tools++/corelib
>X@dirrm include/ncbi-tools++/dbapi/cache
>X@dirrm include/ncbi-tools++/dbapi/driver/impl
>X@dirrm include/ncbi-tools++/dbapi/driver/odbc/unix_odbc
>X@dirrm include/ncbi-tools++/dbapi/driver/odbc
>X@dirrm include/ncbi-tools++/dbapi/driver/util
>X@dirrm include/ncbi-tools++/dbapi/driver
>X@dirrm include/ncbi-tools++/dbapi
>X@dirrm include/ncbi-tools++/html
>X@dirrm include/ncbi-tools++/objects/access
>X@dirrm include/ncbi-tools++/objects/biblio
>X@dirrm include/ncbi-tools++/objects/biotree
>X@dirrm include/ncbi-tools++/objects/blast
>X@dirrm include/ncbi-tools++/objects/blastdb
>X@dirrm include/ncbi-tools++/objects/blastxml
>X@dirrm include/ncbi-tools++/objects/cdd
>X@dirrm include/ncbi-tools++/objects/cn3d
>X@dirrm include/ncbi-tools++/objects/coords
>X@dirrm include/ncbi-tools++/objects/docsum
>X@dirrm include/ncbi-tools++/objects/entrez2
>X@dirrm include/ncbi-tools++/objects/entrezgene
>X@dirrm include/ncbi-tools++/objects/featdef
>X@dirrm include/ncbi-tools++/objects/gbproj
>X@dirrm include/ncbi-tools++/objects/gbseq
>X@dirrm include/ncbi-tools++/objects/general
>X@dirrm include/ncbi-tools++/objects/genesbyloc
>X@dirrm include/ncbi-tools++/objects/genomecoll
>X@dirrm include/ncbi-tools++/objects/homologene
>X@dirrm include/ncbi-tools++/objects/id1
>X@dirrm include/ncbi-tools++/objects/id2
>X@dirrm include/ncbi-tools++/objects/insdseq
>X@dirrm include/ncbi-tools++/objects/macro
>X@dirrm include/ncbi-tools++/objects/medlars
>X@dirrm include/ncbi-tools++/objects/medline
>X@dirrm include/ncbi-tools++/objects/mim
>X@dirrm include/ncbi-tools++/objects/misc
>X@dirrm include/ncbi-tools++/objects/mla
>X@dirrm include/ncbi-tools++/objects/mmdb1
>X@dirrm include/ncbi-tools++/objects/mmdb2
>X@dirrm include/ncbi-tools++/objects/mmdb3
>X@dirrm include/ncbi-tools++/objects/ncbimime
>X@dirrm include/ncbi-tools++/objects/objprt
>X@dirrm include/ncbi-tools++/objects/omssa
>X@dirrm include/ncbi-tools++/objects/pcassay
>X@dirrm include/ncbi-tools++/objects/pcsubstance
>X@dirrm include/ncbi-tools++/objects/proj
>X@dirrm include/ncbi-tools++/objects/pub
>X@dirrm include/ncbi-tools++/objects/pubmed
>X@dirrm include/ncbi-tools++/objects/remap
>X@dirrm include/ncbi-tools++/objects/scoremat
>X@dirrm include/ncbi-tools++/objects/seq
>X@dirrm include/ncbi-tools++/objects/seqalign
>X@dirrm include/ncbi-tools++/objects/seqblock
>X@dirrm include/ncbi-tools++/objects/seqcode
>X@dirrm include/ncbi-tools++/objects/seqedit
>X@dirrm include/ncbi-tools++/objects/seqfeat
>X@dirrm include/ncbi-tools++/objects/seqloc
>X@dirrm include/ncbi-tools++/objects/seqres
>X@dirrm include/ncbi-tools++/objects/seqset
>X@dirrm include/ncbi-tools++/objects/seqsplit
>X@dirrm include/ncbi-tools++/objects/seqtable
>X@dirrm include/ncbi-tools++/objects/seqtest
>X@dirrm include/ncbi-tools++/objects/submit
>X@dirrm include/ncbi-tools++/objects/taxon1
>X@dirrm include/ncbi-tools++/objects/taxon3
>X@dirrm include/ncbi-tools++/objects/tinyseq
>X@dirrm include/ncbi-tools++/objects/trackmgr
>X@dirrm include/ncbi-tools++/objects/valerr
>X@dirrm include/ncbi-tools++/objects/valid
>X@dirrm include/ncbi-tools++/objects/variation
>X@dirrm include/ncbi-tools++/objects
>X@dirrm include/ncbi-tools++/objmgr/impl
>X@dirrm include/ncbi-tools++/objmgr/split
>X@dirrm include/ncbi-tools++/objmgr/util
>X@dirrm include/ncbi-tools++/objmgr
>X@dirrm include/ncbi-tools++/objtools/align_format
>X@dirrm include/ncbi-tools++/objtools/alnmgr
>X@dirrm include/ncbi-tools++/objtools/blast/blastdb_format
>X@dirrm include/ncbi-tools++/objtools/blast/gene_info_reader
>X@dirrm include/ncbi-tools++/objtools/blast/seqdb_reader/impl
>X@dirrm include/ncbi-tools++/objtools/blast/seqdb_reader
>X@dirrm include/ncbi-tools++/objtools/blast/seqdb_writer/impl
>X@dirrm include/ncbi-tools++/objtools/blast/seqdb_writer
>X@dirrm include/ncbi-tools++/objtools/blast/services
>X@dirrm include/ncbi-tools++/objtools/blast
>X@dirrm include/ncbi-tools++/objtools/cleanup
>X@dirrm include/ncbi-tools++/objtools/data_loaders/blastdb
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/cache
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/gicache
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/id1
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/id2
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/pubseq
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/readers/id1
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/readers/id2
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos2
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank/readers
>X@dirrm include/ncbi-tools++/objtools/data_loaders/genbank
>X@dirrm include/ncbi-tools++/objtools/data_loaders
>X@dirrm include/ncbi-tools++/objtools/format/items
>X@dirrm include/ncbi-tools++/objtools/format
>X@dirrm include/ncbi-tools++/objtools/readers
>X@dirrm include/ncbi-tools++/objtools/seqmasks_io
>X@dirrm include/ncbi-tools++/objtools/simple
>X@dirrm include/ncbi-tools++/objtools
>X@dirrm include/ncbi-tools++/serial/impl
>X@dirrm include/ncbi-tools++/serial
>X@dirrm include/ncbi-tools++/util/bitset
>X@dirrm include/ncbi-tools++/util/cache
>X@dirrm include/ncbi-tools++/util/compress/bzip2
>X@dirrm include/ncbi-tools++/util/compress/zlib
>X@dirrm include/ncbi-tools++/util/compress
>X@dirrm include/ncbi-tools++/util/creaders
>X@dirrm include/ncbi-tools++/util/impl
>X@dirrm include/ncbi-tools++/util/math
>X@dirrm include/ncbi-tools++/util/regexp
>X@dirrm include/ncbi-tools++/util/sequtil
>X@dirrm include/ncbi-tools++/util/tables
>X@dirrm include/ncbi-tools++/util/xregexp
>X@dirrm include/ncbi-tools++/util
>X@dirrm include/ncbi-tools++
>7ec228fb889d4ca1983a930120902723
>exit
>

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Attachments on bug 190854: 143589 | 148035